GENSCAN 1.0	Date run:  3-Nov-116	Time: 15:06:29

Sequence gi568815596f:234935003_235153813 : 218811 bp : 47.04% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +   4788   4867   80  1  2   93   41    90 0.379   2.73
 1.02 PlyA +   4966   4971    6                               1.05

 2.00 Prom +  14249  14288   40                              -2.36
 2.01 Init +  16636  16686   51  0  0   74   11    99 0.786  -0.03
 2.02 Intr +  16978  17168  191  0  2   82   96    93 0.615   7.88
 2.03 Intr +  17414  17784  371  2  2   55   46   136 0.570   0.85
 2.04 Intr +  18448  18585  138  2  0   66   90    45 0.324   2.94
 2.05 Intr +  29875  30188  314  2  2   61   90   165 0.353   9.90
 2.06 Intr +  36171  36222   52  2  1  108   82    -7 0.164  -0.82
 2.07 Intr +  43681  43898  218  2  2   63   71   175 0.600  11.52
 2.08 Intr +  46621  46725  105  0  0   31   83    64 0.425   0.61
 2.09 Intr +  48354  48404   51  2  0   84   48    70 0.729   1.70
 2.10 Intr +  50667  50787  121  2  1   57   66   159 0.932  10.67
 2.11 Intr +  50968  51168  201  2  0   -4   16   224 0.617   5.26
 2.12 Intr +  60301  60374   74  2  2  126   96    98 0.572  13.53
 2.13 Term +  60690  60749   60  2  0   80   43    37 0.134  -3.80
 2.14 PlyA +  61277  61282    6                               1.05

 3.06 PlyA -  61356  61351    6                               1.05
 3.05 Term -  61856  61710  147  2  0  100   34    78 0.021   1.50
 3.04 Intr -  66667  66573   95  2  2   50   58    86 0.141   1.48
 3.03 Intr -  68562  68423  140  2  2   81   51    73 0.740   3.01
 3.02 Intr -  73553  73464   90  1  0   44   54   120 0.703   3.31
 3.01 Init -  87980  87835  146  2  2   97   84    64 0.439   6.49
 3.00 Prom -  88595  88556   40                              -7.46

 4.00 Prom +  89534  89573   40                              -5.46
 4.01 Init + 100001 100118  118  1  1   86  105   123 0.999  14.22
 4.02 Intr + 105886 108337 2452  2  1   93   91  3100 0.638 298.15
 4.03 Intr + 110024 110339  316  2  1   50   41   225 0.375  10.07
 4.04 Intr + 117560 117748  189  1  0  144   83   342 0.999  39.08
 4.05 Term + 118590 118814  225  2  0   71   42   388 0.999  29.28
 4.06 PlyA + 120600 120605    6                               1.05

 5.05 PlyA - 120634 120629    6                               1.05
 5.04 Term - 128297 128224   74  0  2  126   47    93 0.976   7.07
 5.03 Intr - 130096 129976  121  1  1   76   37    95 0.916   3.27
 5.02 Intr - 132174 132046  129  0  0   74   46    84 0.568   3.69
 5.01 Init - 145577 145572    6  2  0   63  117     9 0.267   1.68
 5.00 Prom - 146483 146444   40                              -2.86

 6.00 Prom + 152236 152275   40                              -6.96
 6.01 Init + 157570 157690  121  0  1   31   57   138 0.377   5.35
 6.02 Intr + 158066 158178  113  0  2   78   21    57 0.528  -1.90
 6.03 Intr + 158314 158519  206  0  2   78   45    92 0.046   1.90
 6.04 Intr + 161920 162090  171  1  0  116   67    54 0.540   5.16
 6.05 Term + 178713 178866  154  0  1  117   53    55 0.161   2.29
 6.06 PlyA + 180237 180242    6                               1.05

 7.03 PlyA - 181037 181032    6                               1.05
 7.02 Term - 201253 200939  315  1  0    7   33   194 0.193   0.74
 7.01 Init - 206622 206539   84  0  0   75   76    52 0.368   3.52
 7.00 Prom - 207174 207135   40                              -4.76

 8.02 PlyA - 207339 207334    6                               1.05
 8.01 Sngl - 212230 212021  210  1  0   68   38   287 0.975  16.89

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  23024  22909  116  0  2   87   41   111 0.856   5.03
S.002 Term + 158314 158523  210  0  0   78   51   103 0.881   2.89


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:234935003_235153813|GENSCAN_predicted_peptide_1|26_aa
XSVLIGELANLESMQRDLKMTIYAFA

>gi568815596f:234935003_235153813|GENSCAN_predicted_CDS_1|81_bp
nactcggtgcttattggggaacttgctaacctggaaagtatgcagagagatctgaagatg
acaatctatgcctttgcctga

>gi568815596f:234935003_235153813|GENSCAN_predicted_peptide_2|648_aa
MGVRGGTGARASTQTCSARDHPPPAEAGAQRARHSRRSGPLATTAAAAAVSPAEPRAPPA
GPSRWPTSGASGAGGDAMRARDPARGSGRRAAALRVRSGRPPTPALATSRRAALRGGLPG
QPDASSGANRGARSAHGGRGGHGRAWRGRGAPLERRWGGGKDARSPVKLVGDNAYFNFFG
DPSCEDEIENSGFWLGDRVTEQPRESLLATSPLPSGLGAFLEIRGPDEMMGEAWILTALC
GFGSLPCKNEGGDPSIIDAWQGGYPVHHILFQTPIFTALALRVAESVSQPSAPVTHMWYF
SLPACCEILIKLSLINHPVQLLKVTFITQNNTSETKLTVESLKESQHSFIPERKKLLAPT
IPLSVAMNLITTVTLRGTTETETSTPTVGCFEVLEGSPGPVERDRVVQRPWPAFETEGQE
AGEIRESCRCVEEHAEPLEERLYLQSQLAGVCLHKDSLVTICSRFLAECEVKSRLTFGME
VVPGEQDKVLAFMEPVLHPPLMYVRVKQPSMHTYELRDCAQVNQPVTHAYELKEHGAETT
VQVNQPLTLIYENRVHVQVYQPLIYTYELRVHVQVNQPLTQTYELRVHVQVNQPSTHTYE
HRDHASPFSPGQKAVSWDFSDGERLRLYQRIHFLLPPVERSHSSKKPG

>gi568815596f:234935003_235153813|GENSCAN_predicted_CDS_2|1947_bp
atgggggtgcgggggggcacaggagcgcgggccagcacccagacctgctcggcgcgggac
caccctccgcccgccgaggcgggggcccagcgcgcccggcactctcggcggtccgggccc
ctcgccactaccgccgccgccgccgccgtgagtcccgcggagccgcgcgcgcccccggct
gggccgagccgctggccgacgagcggagcctcaggagccggcggggacgccatgcgagcc
agggacccggcccggggttccgggcgccgagccgcagccctccgcgtgcgctcgggccgc
cccccaaccccggctctggccacttcccggcgggcggccctgcggggtggcctccctggg
caaccggacgcgtcctcgggcgcaaatcggggggcgcgctcggctcacgggggccgtggg
ggccacgggagggcgtggaggggtcggggcgcccccctcgagcggcgctggggaggaggg
aaggacgcgcggtctccggttaaacttgttggtgacaatgcatatttcaacttcttcgga
gatccctcctgtgaggatgaaattgaaaactccggtttctggcttggcgatcgggtgacc
gagcagccgcgagaatctctgctggccacgagtccccttcccagtgggctgggggctttc
cttgagatccgtggcccagatgaaatgatgggagaggcctggatcctcaccgccctctgt
ggttttggttccttgccttgtaaaaatgaagggggtgacccatccatcatcgacgcctgg
cagggaggctaccctgtgcaccacatcctgttccagacccccatcttcacagccctggca
ctacgtgtagcagagtcggtctcccagcccagtgctcccgtgacccacatgtggtacttc
tccctcccggcctgctgtgagattcttataaaattgtctctgattaatcaccctgtacag
cttttaaaagttacttttattacccaaaacaacacttcagaaactaagctgacggttgaa
tcattgaaggagtcacagcattctttcatcccagagagaaaaaagctcttggcacccacc
attccactttctgttgctatgaatttgattactacagttaccttaagagggacaactgaa
acagagacaagcaccccaacagtagggtgcttcgaggtcctggaggggagccctggccct
gtggagagagaccgagtcgtgcagcgtccgtggcctgcatttgaaactgaagggcaagag
gctggtgagatccgagagtcatgccgctgcgtggaggaacatgctgaacctctggaggaa
cggctctacctccagtcgcagttggctggtgtttgtttgcacaaggattctttggtaaca
atctgcagtcggtttctggcggaatgtgaggtgaagtcacgactgactttcgggatggag
gttgttcctggtgaacaggacaaagtccttgcattcatggagcctgttctgcatcctccc
ttgatgtatgttcgggtgaagcagccctcgatgcacacctatgagctcagggactgtgcg
caggtgaaccagcctgtgacacacgcctacgagctcaaggagcacggtgcagagaccaca
gtgcaggtgaaccagcctctgacactcatctacgagaatagggtccacgtgcaggtgtac
cagcccttgatatacacctatgagctcagggtccatgtgcaggtgaaccagcccttgaca
caaacctatgagctcagggtccatgtgcaggtgaaccagccctccactcacacctatgag
cacagagaccatgcgtctcccttctctcctggacagaaggccgtgtcctgggacttctct
gatggcgagaggctgcggctgtaccagcgaatccactttctgttgccacccgtggaacgt
tctcactcttccaagaagccaggctag

>gi568815596f:234935003_235153813|GENSCAN_predicted_peptide_3|205_aa
MGYWLERCEEGQGQGVGPNQTHQAPTATLQREHHPDPAPPSKTATFLLVKYLRSIILHKG
YQKENEEKITTYKEKRYKRPESLVPESRLHTGAGKMGICFSADKTVNRHSILRMTLILLS
CPDLYREHLRRSGIVQNKTKFNEKPKDNFQKPGLPCSDGACSGDAPNAKSSEASPCGGPK
RTMPHNPLVSLQFIYRQEPSCSARL

>gi568815596f:234935003_235153813|GENSCAN_predicted_CDS_3|618_bp
atgggctactggctagaaagatgtgaggagggacaaggtcaaggagtggggcccaaccag
acccatcaggccccaactgcaactctgcagagggagcaccaccctgaccctgctcctccc
agcaagactgccacatttttgctagtaaagtacctaaggagcattattctacacaaaggg
taccaaaaagagaatgaggagaaaataaccacctacaaggagaagcggtacaagagacca
gagagtttagttccagagtccaggctacacacaggtgctggcaaaatgggaatctgcttc
tcagcagataaaacagtaaacagacactctatccttcgaatgaccctcattctgctctca
tgccccgacctgtacagggagcaccttcgacgttcaggcattgttcagaataagaccaaa
ttcaatgaaaaacctaaagataattttcagaagccaggtcttccctgttctgatggggcc
tgctctggcgatgccccaaatgcaaagtccagcgaggccagtccatgtgggggcccaaag
agaaccatgccgcacaaccccctggtgtctctccagtttatctacagacaagaaccaagc
tgcagtgctcgcctttga

>gi568815596f:234935003_235153813|GENSCAN_predicted_peptide_4|1099_aa
MAAQRIRAANSNGLPRCKSEGTLIDLSEGFSETSFNDIKVPSPSALLVDNPTPFGNAKEV
IAIKDYCPTNFTTLKFSKGDHLYVLDTSGGEWWYAHNTTEMGYIPSSYVQPLNYRNSTLS
DSGMIDNLPDSPDEVAKELELLGGWTDDKKVPGRMYSNNPFWNGVQTNPFLNGNVPVMPS
LDELNPKSTVDLLLFDAGTSSFTESSSATTNSTGNIFDELPVTNGLHAEPPVRRDNPFFR
SKRSYSLSELSVLQAKSDAPTSSSFFTGLKSPAPEQFQSREDFRTAWLNHRKLARSCHDL
DLLGQSPGWGQTQAVETNIVCKLDSSGGAVQLPDTSISIHVPEGHVAPGETQQISMKALL
DPPLELNSDRSCSISPVLEVKLSNLEVKTSIILEMKVSAEIKNDLFSKSTVGLQCLRSDS
KEGPYVSVPLNCSCGDTVQAQLHNLEPCMYVAVVAHGPSILYPSTVWDFINKKVTVGLYG
PKHIHPSFKTVVTIFGHDCAPKTLLVSEVTRQAPNPAPVALQLWGKHQFVLSRPQDLKVC
MFSNMTNYEVKASEQAKVVRGFQLKLGKVSRLIFPITSQNPNELSDFTLRVQVKDDQEAI
LTQFCVQTPQPPPKSAIKPSGQRRFLKKNEVGKIILSPFATTTKYPTFQDRPVSSLKFGK
LLKTVVRQNKNHYLLEYKKGDGIALLSEERVRLRGQLWTKEWYIGYYQGRVGLVHTKNVL
VVGRARPSLCSGPELSTSVLLEQILRPCKFLTYIYASVRTLLMENISSWRSFADALGYVN
LPLTFFCRAELDSEPERVASVLEKLKEDCNNTENKERKSFQKELVMVSAQQVPGRSGVLL
SKAFPPSQCTWAWAVVSEGMACVPPISHHPCVIQSTPPGSPEPGAGPWPGLLTGAPSTVA
DKAPPSRESLCAGGPETTAVAVHAVVEPDSIAEPRTLTSTLHQRWKNDTTRSTTPAVENN
RRALLKMDCQGLVVRLIQDFVLLTTAVEVAQRWRELAEKLAKVSKQQMDAYESPHRDRNG
VVDSEAMWKPAYDFLLTWSHQIGDSYRDVIQELHLGLDKMKNPITKRWKHLTGTLILVNS
LDVLRAAAFSPADQDDFVI

>gi568815596f:234935003_235153813|GENSCAN_predicted_CDS_4|3300_bp
atggcggctcagcggatccgagcggccaactccaatggcctccctcgctgcaagtcagag
gggaccctgattgacctgagcgaagggttttcagagacgagctttaatgacatcaaagtg
ccttctcccagtgccttgctcgtagacaaccccacacctttcggaaatgcaaaggaagtg
attgcgatcaaggactattgccccaccaacttcaccacactgaagttctccaagggcgac
catctctacgtcttggacacatctggcggtgagtggtggtacgcacacaacaccaccgaa
atgggctacatcccctcctcctatgtgcagcccttgaactaccggaactcaacactgagt
gacagcggtatgattgataatcttccagacagcccagacgaggtagccaaggagctggag
ctgctcgggggatggacagatgacaaaaaagtaccaggcagaatgtacagtaataaccct
ttctggaatggggtccagaccaatccatttctgaatgggaacgtgcccgtcatgcccagc
ctggatgagctgaatcccaaaagtactgtggatttgctcctttttgacgcaggtacatcc
tccttcaccgaatccagctcagccaccacgaatagcactggcaacatcttcgatgagctt
ccagtcacaaacggactccacgcagagccgccggtcaggcgggacaaccccttcttcaga
agcaagcgctcctacagtctctcggaactctccgtcctccaagccaagtccgatgctccc
acatcgtcgagtttcttcaccggcttgaaatcacctgcccccgagcaatttcagagccgg
gaggattttcgaactgcctggctaaaccacaggaagctggcccggtcttgccacgacctg
gacttgcttggccaaagccctggttggggccagacccaagccgtggagacaaacatcgtg
tgcaagctggatagctccgggggtgctgtccagcttcctgacaccagcatcagcatccac
gtgcccgagggccacgtcgcccctggggagacccagcagatctccatgaaagccctgctg
gaccccccgctggagctcaacagtgacaggtcctgcagcatcagccctgtgctggaggtc
aagctgagcaacctggaggtgaaaacctctatcatcttggagatgaaagtgtcagccgag
ataaaaaatgacctttttagcaaaagcacagtgggcctccagtgcctgaggagcgactcg
aaggaagggccatatgtctccgtcccgctcaactgcagctgtggggacacggtccaggca
cagctgcacaacctggagccctgtatgtacgtggctgtcgtggcccatggcccaagcatc
ctctacccttccaccgtgtgggacttcatcaataaaaaagtcacagtgggtctctacggc
cctaaacacatccacccatccttcaagacggtagtgaccatttttgggcatgactgtgcc
ccaaagacgctcctggtcagcgaggtcacacgccaggcacccaaccctgccccggtggcc
ctgcagctgtgggggaagcaccagttcgttttgtccaggccccaggatctcaaggtctgt
atgttttccaatatgacgaattacgaggtcaaagccagcgagcaggccaaagtggtgcga
ggattccagctgaagctgggcaaggtgagccgcctgatcttccccatcacctcccagaac
cccaacgagctctctgacttcacgctgcgggttcaggtgaaggacgaccaggaggccatc
ctcacccagttttgtgtccagactcctcagccaccccctaaaagtgccatcaagccttcc
gggcaaaggaggtttctcaagaagaacgaagtcgggaaaatcatcctgtccccgtttgcc
accactacaaagtacccgactttccaggaccgcccggtgtccagcctcaagtttggtaag
ttgctcaagactgtggtgcggcagaacaagaaccactacctgctggagtacaagaagggc
gacgggatcgccctgctcagcgaggagcgggtcaggctccggggccagctgtggaccaag
gagtggtacatcggctactaccagggcagggtgggcctcgtgcacaccaagaacgtgctg
gtggtcggcagggcccggcccagcctgtgctcgggccccgagctgagcacctcggtgctg
ctggagcagatcctgcggccctgcaaattcctcacgtacatctatgcctccgtgaggacc
ctgctcatggagaacatcagcagctggcgctccttcgctgacgccctgggctacgtgaac
ctgccgctcacctttttctgccgggcagagctggatagtgagcccgagcgggtggcgtcc
gtcctagaaaagctgaaggaggactgtaacaacactgagaacaaagaacggaagtccttc
cagaaggagcttgtgatggtgagtgctcagcaggtgcctgggcgttcaggggtgctgctc
agcaaagcctttccgccttcccagtgcacatgggcgtgggccgtggtgtcggaggggatg
gcctgcgtccctcccatcagccatcacccatgtgtgattcagagcacacctcctggctct
ccagaacctggtgccgggccgtggcctggtctcctcacgggtgcacccagcacagtggca
gacaaagcgcctccatcccgtgagagcctctgtgcgggcggccccgagaccacagccgtg
gctgtgcatgctgtcgtggaacctgacagcattgctgagcccaggacactcacctcgacg
ttgcaccagaggtggaaaaatgacacaaccaggagtaccacaccagctgtggaaaataac
cgccgagccctactgaagatggactgccagggcctggtggtcagactcatccaggacttt
gtgctcctgaccacggctgtagaggtggcccagcgctggcgggagctggctgagaagctg
gccaaggtctccaagcagcagatggacgcctacgagtctccccaccgggacaggaacggg
gttgtggacagcgaggccatgtggaagcctgcgtatgacttcttactcacctggagccat
cagatcggggacagctaccgggatgtcatccaggagctgcacctgggcctggacaagatg
aaaaaccccatcaccaagcgctggaagcacctcactgggactctgatcttggtgaactcc
ctggacgttctgagagcagccgccttcagccctgcggaccaggacgacttcgtgatttga

>gi568815596f:234935003_235153813|GENSCAN_predicted_peptide_5|109_aa
MPQGQPNRSQSRGLHQAGSLNTTAWILIKVQQEVTASPTMIGSQEVSGDCSERTFNPQKA
HLRLQMSTKRTHTCYSLLRGIVYTLGTSESFIGTHNDLQAGIWEPPFIG

>gi568815596f:234935003_235153813|GENSCAN_predicted_CDS_5|330_bp
atgccgcaggggcagcccaacaggtcccagtcacgtggtctgcatcaagcaggctccctg
aacacgactgcctggattttaattaaagttcagcaggaggtgactgcaagtccaacaatg
attggaagccaggaggtgtcaggggactgttcagagagaactttcaacccccagaaagct
cacctgaggctacagatgtccaccaagcgtacccacacttgctattctctcctacgtggg
atcgtctacaccctgggtaccagtgaaagcttcatcgggacccacaatgacctccaagct
ggcatttgggagcctccattcatcggctga

>gi568815596f:234935003_235153813|GENSCAN_predicted_peptide_6|254_aa
MLPPPPHKHQGILTDAANPVCSFAVCIKVRHTKGALALETGGQASLSVPESLRCSAAIYL
VLLMSSCCRMRDWEELLERAYASIYRNPICASITRTWGSTDGDFQASGVVLVKSTPWTSF
TTEAANLGDFPEDEDEEFGSTSDASWQAVFPVSLCVSASFFWWCDIALYYSYATLGEVGR
KLYEISLQYFLQLHMNVQASKLKSSDLVAPCSLLPRRRKSLSPHTPHRGVYGPGGGCPVK
SERDGACLCVIRGC

>gi568815596f:234935003_235153813|GENSCAN_predicted_CDS_6|765_bp
atgcttcctcctcctccccacaagcaccagggcatcctcacagatgcagcaaatcctgtt
tgctcttttgccgtgtgcatcaaggtcaggcacaccaagggcgcgctggccttggagaca
ggcgggcaggcctcactgtctgtgcctgagtccctgcgctgctctgcagccatctacctc
gtcttgctgatgagcagctgctgcagaatgagggattgggaggaattactagagagagcc
tatgccagcatctatagaaacccaatatgtgcatcgataaccagaacctggggcagcact
gatggggatttccaagcatctggagtagtgctggtaaaatccacaccctggacttcattc
accactgaggcagcaaacttaggggattttccagaagatgaggatgaagagtttgggagc
acatcagatgccagctggcaggctgtcttccccgtgtctctctgtgtatcagcgtcattt
ttctggtggtgtgatattgccttatactatagttatgctacccttggggaagttggacga
aagttatatgagatctctctgcagtatttcttacaactgcatatgaatgtgcaagcatcc
aaactaaaaagctcagaccttgttgctccctgttctttgcttccccgaagaagaaagtct
ctcagcccccacactcctcatagaggtgtctatggccccggtgggggctgtccggtgaag
tcagagcgcgacggagcctgcctgtgcgtgattcgtggctgctga

>gi568815596f:234935003_235153813|GENSCAN_predicted_peptide_7|132_aa
MSSGTVAASLDKDQDCYIQRCGVISDLQVTAIFFRPRELHFSYWNVAWEPLTTCGVRVLS
PPGGCVNIGCRDEQLWASIPHIVHTLKQQRRWTRGAVFAYCLVESDAVSPSTIRFWGSDA
AELLQLFLYREG

>gi568815596f:234935003_235153813|GENSCAN_predicted_CDS_7|399_bp
atgtcctcaggcactgtggctgcatcgctagataaggaccaggattgctacatccagcgc
tgcggtgtgatctcagacttgcaggtgactgccatcttcttccgtccccgggaacttcat
ttctcctactggaacgtggcgtgggaaccactcactacgtgtggggttagagtcctttcg
ccccctggtggttgcgtgaacattggttgcagggatgaacagctctgggcctccatcccg
cacatcgtccataccctcaagcagcaacgcagatggactcgaggtgcggtgttcgcctac
tgccttgtggagtccgacgctgtgtctccctccacgatccggttttggggctcagatgct
gcagagttgctccaattatttttatatagagagggatag

>gi568815596f:234935003_235153813|GENSCAN_predicted_peptide_8|69_aa
MGQIGPETTIDPGKDLNTLDDKELAKRKSIMDELFEKNQKNDPNFVYNIEVKIPQDEQLQ
SCGWDTVSS

>gi568815596f:234935003_235153813|GENSCAN_predicted_CDS_8|210_bp
atgggacaaattggaccggaaacaaccattgatcctggaaaagacctgaacacactggat
gacaaggagcttgccaaaaggaagagcatcatggatgaactttttgagaaaaatcagaag
aatgatccaaattttgtttacaacattgaggtcaaaatcccacaggatgaacagctgcag
tcctgtggctgggacacagtcagctcataa