GENSCAN 1.0	Date run:  3-Nov-116	Time: 15:03:26

Sequence gi568815578f:43466316_43685013 : 218698 bp : 46.92% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -    460    455    6                               1.05
 1.04 Term -  11421  11383   39  0  0  117   46    14 0.104  -2.71
 1.03 Intr -  15210  15107  104  1  2   87   65    50 0.079   2.49
 1.02 Intr -  20235  20210   26  2  2   78   76    28 0.071  -1.73
 1.01 Init -  27727  27666   62  1  2   45  103    73 0.542   4.32
 1.00 Prom -  28297  28258   40                              -2.06

 2.00 Prom +  29014  29053   40                              -2.86
 2.01 Init +  47171  47324  154  1  1   99  109    67 0.277  10.30
 2.02 Intr +  47523  47746  224  1  2   66   60   153 0.786   8.15
 2.03 Intr +  48320  48461  142  1  1   29   57   163 0.806   7.23
 2.04 Intr +  48694  48844  151  2  1   57   91   107 0.997   7.12
 2.05 Intr +  48977  49100  124  2  1   67   58   152 0.996  10.69
 2.06 Intr +  49778  49862   85  1  1   12   68    64 0.089  -3.81
 2.07 Intr +  62342  62430   89  0  2   91   86    95 0.983   9.29
 2.08 Intr +  62949  63053  105  2  0   48   83   166 0.827  12.51
 2.09 Intr +  63969  64104  136  2  1   47  116   169 0.998  15.74
 2.10 Intr +  64483  64574   92  2  2  -36   94   123 0.974   0.21
 2.11 Intr +  66458  66609  152  1  2   99   27   293 0.797  23.26
 2.12 Intr +  67950  68079  130  0  1   52   34   226 0.402  14.30
 2.13 Intr +  68513  68627  115  1  1   76   74   105 0.998   7.92
 2.14 Intr +  69522  69621  100  1  1  116  117   -44 0.598   0.47
 2.15 Intr +  69782  69979  198  2  0  102   72   134 0.833  11.67
 2.16 Intr +  70094  70143   50  2  2   75   89    52 0.990   2.32
 2.17 Intr +  73836  73993  158  1  2   91   78   141 0.976  13.13
 2.18 Intr +  74438  74500   63  1  0   61   94    67 0.842   3.51
 2.19 Intr +  78222  78296   75  2  0   55   72    55 0.468   0.31
 2.20 Intr +  81796  81926  131  0  2   77   -4   202 0.277   9.39
 2.21 Intr +  85399  85488   90  1  0   36   34   125 0.141   1.01
 2.22 Intr + 100761 100802   42  0  0   63   87    69 0.113   1.66
 2.23 Intr + 101350 101407   58  1  1  116  113   177 0.774  21.89
 2.24 Intr + 101601 101684   84  2  0   76   66   118 0.826   8.42
 2.25 Intr + 103070 103201  132  1  0   82   90   294 0.878  29.84
 2.26 Intr + 104302 104414  113  0  2  120   94   199 0.980  22.88
 2.27 Intr + 104709 104745   37  0  1  102   77    28 0.956   1.36
 2.28 Intr + 105736 105822   87  0  0   85   99    99 0.985  10.87
 2.29 Intr + 108594 108689   96  2  0   65  105   121 0.999  11.71
 2.30 Intr + 109909 110064  156  0  0  103   28   217 0.905  17.41
 2.31 Intr + 113657 113746   90  1  0   78   83    48 0.836   3.49
 2.32 Intr + 118275 118292   18  2  0  105   70    37 0.503   0.41
 2.33 Term + 118537 118701  165  0  0   60   43   182 0.993   8.82
 2.34 PlyA + 121330 121335    6                               1.05

 3.00 Prom + 127692 127731   40                              -0.76
 3.01 Init + 128384 128502  119  1  2  105   47   153 0.747  12.57
 3.02 Intr + 147535 147661  127  1  1   99   87    10 0.193   2.68
 3.03 Intr + 152625 152711   87  2  0   72  103    49 0.947   4.97
 3.04 Intr + 154542 154610   69  2  0   81   59    44 0.437   0.18
 3.05 Term + 157576 157752  177  0  0   75   52   287 0.814  21.49
 3.06 PlyA + 158820 158825    6                              -1.75

 4.00 Prom + 158893 158932   40                              -5.56
 4.01 Init + 159129 159134    6  2  0  104  101    10 0.106   4.21
 4.02 Intr + 170830 170938  109  0  1  132   84    62 0.985  10.06
 4.03 Intr + 176164 176309  146  2  2   73   92   140 0.871  12.90
 4.04 Term + 180621 180668   48  2  0   92   49    51 0.807  -1.10
 4.05 PlyA + 181317 181322    6                              -0.45

 5.00 Prom + 183797 183836   40                              -5.76
 5.01 Init + 186208 186383  176  0  2   83   52   126 0.991   7.32
 5.02 Intr + 200737 200892  156  1  0   68    1   117 0.445   0.13
 5.03 Intr + 203170 203241   72  1  0   92   97    10 0.599   0.82
 5.04 Intr + 207491 207584   94  2  1  105  105   137 0.991  17.07
 5.05 Intr + 215469 215540   72  2  0   92   76    98 0.891   8.60
 5.06 Term + 216479 216637  159  1  0   88   50    49 0.648  -0.96
 5.07 PlyA + 218524 218529    6                              -0.45


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr + 100753 100802   50  0  2   63   87    76 0.833   2.48
S.002 Term + 186784 186979  196  1  1   22   54   176 0.995   4.48
S.003 Init + 196317 196324    8  2  2  114   91     0 0.804   3.40


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578f:43466316_43685013|GENSCAN_predicted_peptide_1|76_aa
MRMFLKCVPQKLVAAQEAQLMCCGRDLVGETFPCKRADALTVAKRLLGNVFLSWTLLEKS
PVMEVFSDHAATLEFF

>gi568815578f:43466316_43685013|GENSCAN_predicted_CDS_1|231_bp
atgaggatgtttctgaagtgtgtgccccagaagctcgtggcagctcaggaggctcagctc
atgtgttgtgggagggacctggtgggagaaactttcccgtgtaagcgggctgatgctcta
acagtagctaaaaggttattaggaaatgtgtttctctcatggacattactggagaaatct
ccagtgatggaggtcttctctgaccatgcagcaaccctggagtttttctga

>gi568815578f:43466316_43685013|GENSCAN_predicted_peptide_2|1213_aa
MEGHAGMEGHAEMEMLRTLKGPSTGEVSMHLVAGDSPGSGPHLPATAFIIPASSATLGLP
SSALDVSCFPREPIHVGAPEQVAGCEPVSATVLPQLSAGPASSSTSTVRLLEWTEAAAPP
PGGGLRFRISEYKPLNMAGVEQPPSPELRQEGVTEYEDGGAPAGDGEAGPQQAEDHPQNP
PEDPNQDPPEDDSTCQCQACGPHQAAGPDLGSSNDGCPQLFQERSVIVENSSGSTSASEL
LKPMKKRKRREYQSPSEEESEPEAMEKQEEGKDPEGQPTASTPESEEWSSSQPATGEKKE
CWSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVC
GYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTR
AQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDD
TYDYWQLSPLQRPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDF
WIDADHPDIHPAGWCSKTGHPLQPPLGPREPSSASPGGCPPLSYRSLPHTRTSKYSFHHR
KCPTPGCDGSGHVTGKFTAHHCLSGCPLAERNQSRLKAELSDSEASARKKNLSGFSPRKK
PRHHGRIGRPPKYRKIPQEDFQTLTPDVVHQSLFMSALSAHPDRSLSVCWEQHCKLLPGV
AGISASTVAKWTIDEVFGFVQTLTGCEDQARLFKDESQTARPQTLAFALKNLEPGLWQLP
WMIDGEAFLLLTQADIVKIMSVKLGPALKIYNAILMFKNADDTLKSSNHGAVRERILSTP
QLGTYLTEIGAMIDWANGNINLGPSANPNAQPTDFDFLKVIGKGNYGKVLLAKRKSDGAF
YAVKVLQKKSILKKKEQSHIMAERSVLLKNVRHPFLVGLRYSFQTPEKLYFVLDYVNGGE
LFFHLQRERRFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDCQGHVVLTDFGL
CKEGVEPEDTTSTFCGTPEYLAPEVLRKEPYDRAVDWWCLGAVLYEMLHGLPPFYSQDVS
QMYENILHQPLQIPGGRTVAACDLLQSLLHKDQRQRLGSKADFLEIKNHVFFSPINWDDL
YHKRLTPPFNPNVRHEQYLTGPADLKHFDPEFTQEAVSKSIGCTPDTVASSSGASSAFLG
FSYAPEDDDILDC

>gi568815578f:43466316_43685013|GENSCAN_predicted_CDS_2|3642_bp
atggaggggcatgctgggatggaggggcatgctgaaatggagatgctgaggacactgaag
gggccttccacaggggaggtcagcatgcacttggtggccggagacagccccggttctggt
cctcacctgcccgcaactgccttcatcattccagccagttcggccaccctcggcctgccc
agcagtgccctggatgtgtcttgctttccccgggagccaatccatgtgggtgccccggag
caagtggccggctgcgaaccagtttctgccaccgtcctgccgcagcttagcgccgggccg
gccagctccagcaccagcacagtgcggcttctggaatggacagaggccgcggccccgccc
ccagggggcggcctgcggttccggataagcgagtataagccgctgaacatggcgggagtg
gagcagcccccgagccccgagctgcggcaggaaggcgtgaccgaatacgaagatggcggg
gccccggcgggagatggcgaggcgggcccccaacaggcggaggaccacccccagaatcct
ccagaagatcccaatcaggaccccccagaggatgatagcacctgtcagtgccaggcgtgc
gggcctcaccaagccgcgggtccagatcttggttcctctaatgatggctgccctcagctg
ttccaggagcggtcagtcatagtggagaactcctcaggctctaccagcgcttctgagctc
ctcaaacccatgaagaagaggaagcgcagggaataccagagcccatcagaggaggagtcg
gagccagaggccatggagaagcaagaagaaggaaaggacccagagggacaacccactgct
agcaccccagagagtgaggagtggagcagcagccagcctgcaacaggtgagaagaaggaa
tgctggtcgtgggagtcctacctagaggagcagaaggccattactgctccagtcagcctc
ttccaggactcccaggcagtcactcacaacaagaatggcttcaaactgggcatgaagttg
gaaggcattgaccctcaacacccgtccatgtacttcatcctcaccgtggctgaggtatgt
ggctatcgcctacgcctgcactttgatgggtattctgagtgccatgacttctgggtcaat
gccaactcccctgacattcaccctgctggctggttcgagaagacgggccacaagctgcag
cctcccaaaggttacaaggaggaggagttcagctggagccagtacctgcgcagcacaaga
gctcaggctgcccccaagcacctgtttgtgagccagagccacagtcccccacccctgggc
ttccaggtgggcatgaagctggaggctgttgaccgcatgaacccgtcccttgtctgcgtg
gccagtgtgaccgatgtggtggacagccgcttcctggtgcactttgacaactgggatgat
acttatgactactggcagctgtcccctctgcagcgaccccctcacagcttcctggtcaat
atgaagctggaggctgtggaccgcaggaacccagccctgattcgcgtggccagcgtggag
gatgtggaggaccatcggataaagatccactttgatggctggagtcatggctatgatttc
tggatcgacgctgaccacccagacatccaccctgccggctggtgctccaagacaggacat
cccctgcagcctcctctcggacccagagagcccagctctgcctcccctgggggctgtccc
cctctcagctataggagcctgccccacactaggacctccaaatacagctttcaccaccgg
aagtgccccactcctggttgcgacggctctggccatgtcacaggcaagttcacagctcac
cattgcctctcaggctgcccactggctgagaggaaccagagccggctgaaagcggagctg
tctgactcggaggcctcagcccgcaagaagaacctctcaggcttctccccaaggaagaag
cctcgccatcacggccgaattggacgccctccgaagtatcgaaagattccgcaggaagat
ttccagaccctcacgcccgatgtcgtgcaccagtccctcttcatgtcagccctgtcggcc
caccctgaccgctcactctcagtgtgctgggagcagcactgcaagctcctgccaggagta
gcgggcatctcagcctcgacagtcgccaagtggaccatcgatgaggtcttcggctttgtt
cagaccctgacaggttgtgaggaccaagcacgcctcttcaaagacgagtctcagactgcc
agaccacagactctggcctttgctttgaagaacctggaacctgggctttggcagttaccg
tggatgattgacggcgaggccttccttttgctgacacaggcggacattgtgaagatcatg
agcgtcaagctgggcccagccttgaagatctataacgccattctcatgttcaaaaacgct
gatgacaccttaaaaagctccaaccatggagctgtccgagagcgcatcctctccacacca
caactgggaacctacctgaccgagattggtgccatgatagactgggccaatgggaacatc
aacctggggccttcagccaacccaaatgcccagcccacggacttcgacttcctcaaagtc
atcggcaaagggaactacgggaaggtcctactggccaagcgcaagtctgatggggcgttc
tatgcagtgaaggtactacagaaaaagtccatcttaaagaagaaagagcagagccacatc
atggcagagcgcagtgtgcttctgaagaacgtgcggcaccccttcctcgtgggcctgcgc
tactccttccagacacctgagaagctctacttcgtgctcgactatgtcaacgggggagag
ctcttcttccacctgcagcgggagcgccggttcctggagccccgggccaggttctacgct
gctgaggtggccagcgccattggctacctgcactccctcaacatcatttacagggatctg
aaaccagagaacattctcttggactgccagggacacgtggtgctgacggattttggcctc
tgcaaggaaggtgtagagcctgaagacaccacatccacattctgtggtacccctgagtac
ttggcacctgaagtgcttcggaaagagccttatgatcgagcagtggactggtggtgcttg
ggggcagtcctctacgagatgctccatggcctgccgcccttctacagccaagatgtatcc
cagatgtatgagaacattctgcaccagccgctacagatccccggaggccggacagtggcc
gcctgtgacctcctgcaaagccttctccacaaggaccagaggcagcggctgggctccaaa
gcagactttcttgagattaagaaccatgtattcttcagccccataaactgggatgacctg
taccacaagaggctaactccacccttcaacccaaatgtgcgccacgaacagtacctgaca
ggacctgctgacttgaagcattttgacccagagttcacccaggaagctgtgtccaagtcc
attggctgtacccctgacactgtggccagcagctctggggcctcaagtgcattcctggga
ttttcttatgcgccagaggatgatgacatcttggattgctag

>gi568815578f:43466316_43685013|GENSCAN_predicted_peptide_3|192_aa
MEKELRSTILFNAYKKEIFTTNNGYKSMQKKLRSNWKIQRALTFVYPFGATLSVMKPAVA
VLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHMFSDQYLDKEENSKIMDVVFQWLTT
GDIHLNQIDAEDPEISDYMMLPYTATLSKRNRECLQESDEIPRDFTTLFDLSIFQLDTTS
FHSVIESVPVGL

>gi568815578f:43466316_43685013|GENSCAN_predicted_CDS_3|579_bp
atggagaaagagctgcggagcaccattcttttcaatgcctacaaaaaggagatatttacc
accaacaatggctacaaatccatgcagaaaaaacttcggagtaattggaagattcagagg
gctctcacctttgtgtatccttttggtgccacattgagtgtcatgaaaccagcagtggcg
gttctgtctacaggttctgtctgcttcccacttaacagacccattttggctttctatcac
tcaaagaaccaaggtgggaagctggcagtgcttggttcatgtcacatgttcagtgatcaa
tatttggacaaagaagaaaacagcaaaatcatggatgttgttttccagtggctcacgaca
ggagacatccacctaaaccagattgatgctgaggacccagagatttctgactacatgatg
ctgccctacacagccaccctatcaaagcggaatcgagagtgtctccaggagagtgatgag
atcccaagggactttaccaccctcttcgacctgtccatcttccagctggataccacctcc
ttccacagcgtcatcgagtcagtacctgtgggcctctga

>gi568815578f:43466316_43685013|GENSCAN_predicted_peptide_4|102_aa
MAVFPPSFRELPPPPLELFDLDETFSSEKARLAQITNKCTEEDLEFYVRKCGDILGVTSK
LPKDQQDAKHILEHVFFQVVEFKKLNQEHDIDTSETAFQNNF

>gi568815578f:43466316_43685013|GENSCAN_predicted_CDS_4|309_bp
atggcggtttttcctcccagtttccgggagttaccacctcctcctctggagctatttgat
ttagatgaaacgttctcctctgagaaggcacggctggctcagattaccaataagtgtact
gaagaagacctggaattttatgtcaggaagtgtggtgatattcttggagtaaccagtaaa
ctaccaaaggaccaacaggatgccaaacatatccttgagcacgtcttcttccaagtggtg
gagttcaagaaattgaaccaggaacatgacatcgatacaagtgaaacagcattccagaac
aatttctga

>gi568815578f:43466316_43685013|GENSCAN_predicted_peptide_5|242_aa
MPSRLRKTQKLRGHVSHGHGRIGKLQKHPRGHSNAGGMHHHRINFNKYYPGYFGKVGMRT
GRRRRAWREIEKCFNPRRRRLQFLRARSAGPADTLTPSSAARGPERPEQPGAPLPALSLT
HPCPGAEPSTLKGKSEDLDELHYQDTDSDVPEQRDSKCKVKWTHEEDEQLRALVRQFGQQ
DWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVTAGTVPCTQWVFTHQCTW
GL

>gi568815578f:43466316_43685013|GENSCAN_predicted_CDS_5|729_bp
atgccatccagactgaggaagacccagaaacttcggggccatgtgagccatggccatggc
cgcataggcaagctccaaaagcaccccagaggccacagtaatgctggtggaatgcatcac
cacaggatcaacttcaacaaatactacccaggttactttgggaaagttggtatgaggact
gggcggcgccgacgcgcttggcgggagatagaaaagtgcttcaacccgcgccggcggcga
ctgcagttcctgcgagcgaggagcgcgggacctgctgacacgctgacgccttcgagcgcg
gcccggggcccggagcggccggagcagcccggtgccccacttcccgctttgtctctgact
cacccctgtcctggagcagagcccagcacgttgaagggcaaaagcgaggatctggatgag
ctgcactaccaggacacagattcagatgtgccggagcagagggatagcaagtgcaaggtc
aaatggacccatgaggaggacgagcagctgagggccctggtgaggcagtttggacagcag
gactggaagttcctggccagccacttccctaaccgcactgaccagcaatgccagtacagg
tggctgagagttttgaatccagaccttgtcaaggggccatggaccaaagaggaagaccaa
aaagtaactgctgggacagtgccttgcacacagtgggtcttcacccaccagtgtacctgg
ggactgtga