Result of FASTA (ccds) for pF1KB4415
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4415, 130 aa
  1>>>pF1KB4415 130 - 130 aa - 130 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7735+/-0.000719; mu= 13.4848+/- 0.043
 mean_var=57.9526+/-11.496, 0's: 0 Z-trim(108.9): 39  B-trim: 148 in 1/49
 Lambda= 0.168476
 statistics sampled from 10508 (10551) to 10508 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.324), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS4585.1 HIST1H2AC gene_id:8334|Hs108|chr6       ( 130)  825 208.1 1.2e-54
CCDS1573.1 HIST3H2A gene_id:92815|Hs108|chr1       ( 130)  821 207.1 2.4e-54
CCDS30849.1 HIST2H2AA4 gene_id:723790|Hs108|chr1   ( 130)  819 206.6 3.4e-54
CCDS934.1 HIST2H2AA3 gene_id:8337|Hs108|chr1       ( 130)  819 206.6 3.4e-54
CCDS4639.1 HIST1H2AM gene_id:8336|Hs108|chr6       ( 130)  818 206.4 4.1e-54
CCDS4632.1 HIST1H2AK gene_id:8330|Hs108|chr6       ( 130)  818 206.4 4.1e-54
CCDS4574.1 HIST1H2AB gene_id:8335|Hs108|chr6       ( 130)  818 206.4 4.1e-54
CCDS4595.1 HIST1H2AE gene_id:3012|Hs108|chr6       ( 130)  818 206.4 4.1e-54
CCDS4634.1 HIST1H2AL gene_id:8332|Hs108|chr6       ( 130)  818 206.4 4.1e-54
CCDS4619.1 HIST1H2AG gene_id:8969|Hs108|chr6       ( 130)  818 206.4 4.1e-54
CCDS4626.1 HIST1H2AI gene_id:8329|Hs108|chr6       ( 130)  818 206.4 4.1e-54
CCDS4591.1 HIST1H2AD gene_id:3013|Hs108|chr6       ( 130)  814 205.4   8e-54
CCDS4622.1 HIST1H2AH gene_id:85235|Hs108|chr6      ( 128)  804 203.0 4.2e-53
CCDS4628.1 HIST1H2AJ gene_id:8331|Hs108|chr6       ( 128)  799 201.8 9.8e-53
CCDS937.1 HIST2H2AC gene_id:8338|Hs108|chr1        ( 129)  789 199.3 5.3e-52
CCDS938.1 HIST2H2AB gene_id:317772|Hs108|chr1      ( 130)  784 198.1 1.2e-51
CCDS4562.1 HIST1H2AA gene_id:221613|Hs108|chr6     ( 131)  781 197.4 2.1e-51
CCDS31752.1 H2AFJ gene_id:55766|Hs108|chr12        ( 129)  772 195.2 9.3e-51
CCDS8410.1 H2AFX gene_id:3014|Hs108|chr11          ( 143)  739 187.2 2.6e-48
CCDS4184.1 H2AFY gene_id:9555|Hs108|chr5           ( 369)  495 128.2   4e-30
CCDS4183.1 H2AFY gene_id:9555|Hs108|chr5           ( 371)  495 128.2   4e-30
CCDS4185.1 H2AFY gene_id:9555|Hs108|chr5           ( 372)  495 128.2 4.1e-30
CCDS7296.1 H2AFY2 gene_id:55506|Hs108|chr10        ( 372)  485 125.8 2.2e-29
CCDS5496.1 H2AFV gene_id:94239|Hs108|chr7          ( 128)  455 118.2 1.5e-27
CCDS3654.1 H2AFZ gene_id:3015|Hs108|chr4           ( 128)  451 117.2 2.9e-27
CCDS5495.1 H2AFV gene_id:94239|Hs108|chr7          ( 114)  409 107.0 3.1e-24
CCDS5497.1 H2AFV gene_id:94239|Hs108|chr7          ( 102)  357 94.3 1.8e-20
CCDS35464.1 H2AFB3 gene_id:83740|Hs108|chrX        ( 115)  302 80.9 2.1e-16
CCDS35461.1 H2AFB2 gene_id:474381|Hs108|chrX       ( 115)  302 80.9 2.1e-16
CCDS35458.1 H2AFB1 gene_id:474382|Hs108|chrX       ( 115)  293 78.8 9.5e-16
CCDS47581.1 H2AFV gene_id:94239|Hs108|chr7         (  66)  240 65.7 4.6e-12


>>CCDS4585.1 HIST1H2AC gene_id:8334|Hs108|chr6            (130 aa)
 initn: 825 init1: 825 opt: 825  Z-score: 1094.3  bits: 208.1 E(32554): 1.2e-54
Smith-Waterman score: 825; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
CCDS45 TESHHKAKGK
              130

>>CCDS1573.1 HIST3H2A gene_id:92815|Hs108|chr1            (130 aa)
 initn: 821 init1: 821 opt: 821  Z-score: 1089.0  bits: 207.1 E(32554): 2.4e-54
Smith-Waterman score: 821; 99.2% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS15 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
CCDS15 TESHHKAKGK
              130

>>CCDS30849.1 HIST2H2AA4 gene_id:723790|Hs108|chr1        (130 aa)
 initn: 819 init1: 819 opt: 819  Z-score: 1086.4  bits: 206.6 E(32554): 3.4e-54
Smith-Waterman score: 819; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS30 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS30 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
CCDS30 TESHHKAKGK
              130

>>CCDS934.1 HIST2H2AA3 gene_id:8337|Hs108|chr1            (130 aa)
 initn: 819 init1: 819 opt: 819  Z-score: 1086.4  bits: 206.6 E(32554): 3.4e-54
Smith-Waterman score: 819; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS93 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS93 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
CCDS93 TESHHKAKGK
              130

>>CCDS4639.1 HIST1H2AM gene_id:8336|Hs108|chr6            (130 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1085.1  bits: 206.4 E(32554): 4.1e-54
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
CCDS46 TESHHKAKGK
              130

>>CCDS4632.1 HIST1H2AK gene_id:8330|Hs108|chr6            (130 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1085.1  bits: 206.4 E(32554): 4.1e-54
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
CCDS46 TESHHKAKGK
              130

>>CCDS4574.1 HIST1H2AB gene_id:8335|Hs108|chr6            (130 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1085.1  bits: 206.4 E(32554): 4.1e-54
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
CCDS45 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
CCDS45 TESHHKAKGK
              130

>>CCDS4595.1 HIST1H2AE gene_id:3012|Hs108|chr6            (130 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1085.1  bits: 206.4 E(32554): 4.1e-54
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
CCDS45 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
CCDS45 TESHHKAKGK
              130

>>CCDS4634.1 HIST1H2AL gene_id:8332|Hs108|chr6            (130 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1085.1  bits: 206.4 E(32554): 4.1e-54
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
CCDS46 TESHHKAKGK
              130

>>CCDS4619.1 HIST1H2AG gene_id:8969|Hs108|chr6            (130 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1085.1  bits: 206.4 E(32554): 4.1e-54
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
CCDS46 TESHHKAKGK
              130




130 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:58:37 2016 done: Thu Nov  3 14:58:37 2016
 Total Scan time:  1.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
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