Result of FASTA (ccds) for pF1KB3870
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3870, 367 aa
  1>>>pF1KB3870 367 - 367 aa - 367 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6098+/-0.000895; mu= 14.6103+/- 0.054
 mean_var=63.1011+/-12.267, 0's: 0 Z-trim(105.7): 29  B-trim: 2 in 1/49
 Lambda= 0.161457
 statistics sampled from 8549 (8576) to 8549 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.263), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS55.1 KCNAB2 gene_id:8514|Hs108|chr1            ( 367) 2433 575.4 2.7e-164
CCDS56.1 KCNAB2 gene_id:8514|Hs108|chr1            ( 353) 2205 522.3 2.5e-148
CCDS55571.1 KCNAB2 gene_id:8514|Hs108|chr1         ( 300) 1979 469.6 1.5e-132
CCDS33882.1 KCNAB1 gene_id:7881|Hs108|chr3         ( 401) 1940 460.6 1.1e-129
CCDS3175.1 KCNAB1 gene_id:7881|Hs108|chr3          ( 408) 1931 458.5 4.7e-129
CCDS3174.1 KCNAB1 gene_id:7881|Hs108|chr3          ( 419) 1925 457.1 1.3e-128
CCDS11124.1 KCNAB3 gene_id:9196|Hs108|chr17        ( 404) 1712 407.5 1.1e-113
CCDS55570.1 KCNAB2 gene_id:8514|Hs108|chr1         ( 415) 1344 321.8 6.9e-88
CCDS77845.1 KCNAB1 gene_id:7881|Hs108|chr3         ( 372) 1161 279.1 4.2e-75
CCDS77844.1 KCNAB1 gene_id:7881|Hs108|chr3         ( 390) 1161 279.1 4.4e-75
CCDS194.1 AKR7A2 gene_id:8574|Hs108|chr1           ( 359)  272 72.0 8.9e-13
CCDS193.1 AKR7A3 gene_id:22977|Hs108|chr1          ( 331)  268 71.1 1.6e-12


>>CCDS55.1 KCNAB2 gene_id:8514|Hs108|chr1                 (367 aa)
 initn: 2433 init1: 2433 opt: 2433  Z-score: 3063.1  bits: 575.4 E(32554): 2.7e-164
Smith-Waterman score: 2433; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)

               10        20        30        40        50        60
pF1KB3 MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 GGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 WGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 MAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 MTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 CTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPY
              310       320       330       340       350       360

              
pF1KB3 SKKDYRS
       :::::::
CCDS55 SKKDYRS
              

>>CCDS56.1 KCNAB2 gene_id:8514|Hs108|chr1                 (353 aa)
 initn: 2179 init1: 2179 opt: 2205  Z-score: 2776.4  bits: 522.3 E(32554): 2.5e-148
Smith-Waterman score: 2299; 96.2% identity (96.2% similar) in 367 aa overlap (1-367:1-353)

               10        20        30        40        50        60
pF1KB3 MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTF
       :::::::::::::::::::::::::              :::::::::::::::::::::
CCDS56 MYPESTTGSPARLSLRQTGSPGMIY--------------RNLGKSGLRVSCLGLGTWVTF
               10        20                      30        40      

               70        80        90       100       110       120
pF1KB3 GGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF
         50        60        70        80        90       100      

              130       140       150       160       170       180
pF1KB3 WGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 WGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQG
        110       120       130       140       150       160      

              190       200       210       220       230       240
pF1KB3 MAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGA
        170       180       190       200       210       220      

              250       260       270       280       290       300
pF1KB3 MTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLG
        230       240       250       260       270       280      

              310       320       330       340       350       360
pF1KB3 CTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPY
        290       300       310       320       330       340      

              
pF1KB3 SKKDYRS
       :::::::
CCDS56 SKKDYRS
        350   

>>CCDS55571.1 KCNAB2 gene_id:8514|Hs108|chr1              (300 aa)
 initn: 1979 init1: 1979 opt: 1979  Z-score: 2493.0  bits: 469.6 E(32554): 1.5e-132
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 300 aa overlap (68-367:1-300)

        40        50        60        70        80        90       
pF1KB3 FYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEV
                                     ::::::::::::::::::::::::::::::
CCDS55                               MAEQLMTLAYDNGINLFDTAEVYAAGKAEV
                                             10        20        30

       100       110       120       130       140       150       
pF1KB3 VLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFA
               40        50        60        70        80        90

       160       170       180       190       200       210       
pF1KB3 NRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEY
              100       110       120       130       140       150

       220       230       240       250       260       270       
pF1KB3 HMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKI
              160       170       180       190       200       210

       280       290       300       310       320       330       
pF1KB3 LSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAI
              220       230       240       250       260       270

       340       350       360       
pF1KB3 QVLPKLSSSIIHEIDSILGNKPYSKKDYRS
       ::::::::::::::::::::::::::::::
CCDS55 QVLPKLSSSIIHEIDSILGNKPYSKKDYRS
              280       290       300

>>CCDS33882.1 KCNAB1 gene_id:7881|Hs108|chr3              (401 aa)
 initn: 1931 init1: 1931 opt: 1940  Z-score: 2441.9  bits: 460.6 E(32554): 1.1e-129
Smith-Waterman score: 1940; 80.6% identity (93.4% similar) in 350 aa overlap (18-367:52-401)

                            10        20        30        40       
pF1KB3              MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGL
                                     : .:    : . .. :.  . :::::::::
CCDS33 LSKQSSTAPNVVNAARAKFRTVAIIARSLGTFTPQHHISLKESTAKQTGMKYRNLGKSGL
              30        40        50        60        70        80 

        50        60        70        80        90       100       
pF1KB3 RVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKG
       :::::::::::::::::.::.::.:::.::..:.::::::::::::::::.::.::::::
CCDS33 RVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKG
              90       100       110       120       130       140 

       110       120       130       140       150       160       
pF1KB3 WRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPME
       :::::::::::..:::::::::::::::::::::.::.:::::::::::::::: :::::
CCDS33 WRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPME
             150       160       170       180       190       200 

       170       180       190       200       210       220       
pF1KB3 ETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEV
       : ::::::::::::::::::::::.::::::::::::::. ::.:::::::.::::::::
CCDS33 EIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEV
             210       220       230       240       250       260 

       230       240       250       260       270       280       
pF1KB3 QLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQA
       :::::.:::::::::::::::::.:::: .:.:  :::::: :::::..:.:::::.:: 
CCDS33 QLPELYHKIGVGAMTWSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQN
             270       280       290       300       310       320 

       290       300       310       320       330       340       
pF1KB3 KLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSI
       :::.:. :::::::::::::.:::::::::::::::.:. .::.::.::::::::..: .
CCDS33 KLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHV
             330       340       350       360       370       380 

       350       360       
pF1KB3 IHEIDSILGNKPYSKKDYRS
       ..:::.:: :::::::::::
CCDS33 VNEIDNILRNKPYSKKDYRS
             390       400 

>>CCDS3175.1 KCNAB1 gene_id:7881|Hs108|chr3               (408 aa)
 initn: 1931 init1: 1931 opt: 1931  Z-score: 2430.4  bits: 458.5 E(32554): 4.7e-129
Smith-Waterman score: 1931; 84.5% identity (96.4% similar) in 329 aa overlap (39-367:80-408)

       10        20        30        40        50        60        
pF1KB3 SPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEM
                                     ::::::::::::::::::::::::::.::.
CCDS31 GAAEQKYVEKFLRVHGISLQETTRAETGMAYRNLGKSGLRVSCLGLGTWVTFGGQISDEV
      50        60        70        80        90       100         

       70        80        90       100       110       120        
pF1KB3 AEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETE
       ::.:::.::..:.::::::::::::::::.::.:::::::::::::::::..::::::::
CCDS31 AERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETE
     110       120       130       140       150       160         

      130       140       150       160       170       180        
pF1KB3 RGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTS
       :::::::::::::.::.:::::::::::::::: :::::: :::::::::::::::::::
CCDS31 RGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTS
     170       180       190       200       210       220         

      190       200       210       220       230       240        
pF1KB3 RWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLAC
       :::.::::::::::::::. ::.:::::::.:::::::::::::.:::::::::::::::
CCDS31 RWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLAC
     230       240       250       260       270       280         

      250       260       270       280       290       300        
pF1KB3 GIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAI
       ::.:::: .:.:  :::::: :::::..:.:::::.:: :::.:. :::::::::::::.
CCDS31 GIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAV
     290       300       310       320       330       340         

      310       320       330       340       350       360       
pF1KB3 AWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYRS
       :::::::::::::::.:. .::.::.::::::::..: ...:::.:: :::::::::::
CCDS31 AWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
     350       360       370       380       390       400        

>>CCDS3174.1 KCNAB1 gene_id:7881|Hs108|chr3               (419 aa)
 initn: 1925 init1: 1925 opt: 1925  Z-score: 2422.7  bits: 457.1 E(32554): 1.3e-128
Smith-Waterman score: 1925; 84.2% identity (96.4% similar) in 329 aa overlap (39-367:91-419)

       10        20        30        40        50        60        
pF1KB3 SPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEM
                                     .:::::::::::::::::::::::::.::.
CCDS31 ALLREVEMNWYLKLCDLSSEHTTVCTTGMPHRNLGKSGLRVSCLGLGTWVTFGGQISDEV
               70        80        90       100       110       120

       70        80        90       100       110       120        
pF1KB3 AEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETE
       ::.:::.::..:.::::::::::::::::.::.:::::::::::::::::..::::::::
CCDS31 AERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETE
              130       140       150       160       170       180

      130       140       150       160       170       180        
pF1KB3 RGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTS
       :::::::::::::.::.:::::::::::::::: :::::: :::::::::::::::::::
CCDS31 RGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTS
              190       200       210       220       230       240

      190       200       210       220       230       240        
pF1KB3 RWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLAC
       :::.::::::::::::::. ::.:::::::.:::::::::::::.:::::::::::::::
CCDS31 RWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLAC
              250       260       270       280       290       300

      250       260       270       280       290       300        
pF1KB3 GIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAI
       ::.:::: .:.:  :::::: :::::..:.:::::.:: :::.:. :::::::::::::.
CCDS31 GIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAV
              310       320       330       340       350       360

      310       320       330       340       350       360       
pF1KB3 AWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYRS
       :::::::::::::::.:. .::.::.::::::::..: ...:::.:: :::::::::::
CCDS31 AWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
              370       380       390       400       410         

>>CCDS11124.1 KCNAB3 gene_id:9196|Hs108|chr17             (404 aa)
 initn: 1706 init1: 1706 opt: 1712  Z-score: 2154.8  bits: 407.5 E(32554): 1.1e-113
Smith-Waterman score: 1712; 69.4% identity (88.1% similar) in 360 aa overlap (7-363:49-404)

                                       10          20         30   
pF1KB3                         MYPESTTGSPARLSL--RQTGSPGMIY-STRYGSPK
                                     .:  :: .:  :  .  : .  ::  :.  
CCDS11 DRLCGPRPGPGGGNGGPAGGGHGNPPGGGGSGPKARAALVPRPPAPAGALRESTGRGTGM
       20        30        40        50        60        70        

            40        50        60        70        80        90   
pF1KB3 RQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAG
       .    :::::::::::::::::::::::.::.:: ::...:.::..:.::::::::::::
CCDS11 K----YRNLGKSGLRVSCLGLGTWVTFGSQISDETAEDVLTVAYEHGVNLFDTAEVYAAG
           80        90       100       110       120       130    

           100       110       120       130       140       150   
pF1KB3 KAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVD
       ::: .::::.:.::::::: ::::::::::.::::::::::::::::..::::::: :::
CCDS11 KAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLRGSLERLQLGYVD
          140       150       160       170       180       190    

           160       170       180       190       200       210   
pF1KB3 VVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICE
       .::::: ::: :::: :::::.:::::.:.:::::::.. :::::::.:::::: ::.::
CCDS11 IVFANRSDPNCPMEEIVRAMTYVINQGLALYWGTSRWGAAEIMEAYSMARQFNLIPPVCE
          200       210       220       230       240       250    

           220       230       240       250       260       270   
pF1KB3 QAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWL
       :::.:.:::::::.:::::.::::::..:: :::::....:::. .:   :::.::::::
CCDS11 QAEHHLFQREKVEMQLPELYHKIGVGSVTWYPLACGLITSKYDGRVPDTCRASIKGYQWL
          260       270       280       290       300       310    

           280       290       300       310       320       330   
pF1KB3 KDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMEN
       :::. ::.:..::::. .:  .:..::::. :::::::::.:::::::::.:.:.::.:.
CCDS11 KDKVQSEDGKKQQAKVMDLLPVAHQLGCTVAQLAIAWCLRSEGVSSVLLGVSSAEQLIEH
          320       330       340       350       360       370    

           340       350       360       
pF1KB3 IGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYRS
       .::.::: .:. . . :::..:::::.:::    
CCDS11 LGALQVLSQLTPQTVMEIDGLLGNKPHSKK    
          380       390       400        

>>CCDS55570.1 KCNAB2 gene_id:8514|Hs108|chr1              (415 aa)
 initn: 1344 init1: 1344 opt: 1344  Z-score: 1691.4  bits: 321.8 E(32554): 6.9e-88
Smith-Waterman score: 2140; 93.8% identity (94.6% similar) in 352 aa overlap (31-367:64-415)

               10        20        30        40        50        60
pF1KB3 MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTF
                                     . .:  . ::::::::::::::::::::::
CCDS55 LQRLREVRAAAQARNMESFLRMHGLSLDGCTAQRTGMKYRNLGKSGLRVSCLGLGTWVTF
            40        50        60        70        80        90   

               70        80        90       100       110       120
pF1KB3 GGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF
           100       110       120       130       140       150   

              130       140       150       160                    
pF1KB3 WGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPME-------------
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS55 WGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEGDPFSSSKSRTFI
           160       170       180       190       200       210   

         170       180       190       200       210       220     
pF1KB3 --ETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKV
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKV
           220       230       240       250       260       270   

         230       240       250       260       270       280     
pF1KB3 EVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQ
           280       290       300       310       320       330   

         290       300       310       320       330       340     
pF1KB3 QAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSS
           340       350       360       370       380       390   

         350       360       
pF1KB3 SIIHEIDSILGNKPYSKKDYRS
       ::::::::::::::::::::::
CCDS55 SIIHEIDSILGNKPYSKKDYRS
           400       410     

>>CCDS77845.1 KCNAB1 gene_id:7881|Hs108|chr3              (372 aa)
 initn: 1161 init1: 1161 opt: 1161  Z-score: 1461.8  bits: 279.1 E(32554): 4.2e-75
Smith-Waterman score: 1701; 73.1% identity (85.4% similar) in 350 aa overlap (18-367:52-372)

                            10        20        30        40       
pF1KB3              MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGL
                                     : .:    : . .. :.  . :::::::::
CCDS77 LSKQSSTAPNVVNAARAKFRTVAIIARSLGTFTPQHHISLKESTAKQTGMKYRNLGKSGL
              30        40        50        60        70        80 

        50        60        70        80        90       100       
pF1KB3 RVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKG
       :::::::::::::::::.::.::.:::.::..:.::::::::::::::::.::.::::::
CCDS77 RVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKG
              90       100       110       120       130       140 

       110       120       130       140       150       160       
pF1KB3 WRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPME
       :::::::::::..::::::::::::::::::                             
CCDS77 WRRSSLVITTKLYWGGKAETERGLSRKHIIE-----------------------------
             150       160       170                               

       170       180       190       200       210       220       
pF1KB3 ETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEV
       : ::::::::::::::::::::::.::::::::::::::. ::.:::::::.::::::::
CCDS77 EIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEV
            180       190       200       210       220       230  

       230       240       250       260       270       280       
pF1KB3 QLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQA
       :::::.:::::::::::::::::.:::: .:.:  :::::: :::::..:.:::::.:: 
CCDS77 QLPELYHKIGVGAMTWSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQN
            240       250       260       270       280       290  

       290       300       310       320       330       340       
pF1KB3 KLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSI
       :::.:. :::::::::::::.:::::::::::::::.:. .::.::.::::::::..: .
CCDS77 KLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHV
            300       310       320       330       340       350  

       350       360       
pF1KB3 IHEIDSILGNKPYSKKDYRS
       ..:::.:: :::::::::::
CCDS77 VNEIDNILRNKPYSKKDYRS
            360       370  

>>CCDS77844.1 KCNAB1 gene_id:7881|Hs108|chr3              (390 aa)
 initn: 1161 init1: 1161 opt: 1161  Z-score: 1461.4  bits: 279.1 E(32554): 4.4e-75
Smith-Waterman score: 1686; 76.3% identity (87.8% similar) in 329 aa overlap (39-367:91-390)

       10        20        30        40        50        60        
pF1KB3 SPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEM
                                     .:::::::::::::::::::::::::.::.
CCDS77 ALLREVEMNWYLKLCDLSSEHTTVCTTGMPHRNLGKSGLRVSCLGLGTWVTFGGQISDEV
               70        80        90       100       110       120

       70        80        90       100       110       120        
pF1KB3 AEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETE
       ::.:::.::..:.::::::::::::::::.::.:::::::::::::::::..::::::::
CCDS77 AERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETE
              130       140       150       160       170       180

      130       140       150       160       170       180        
pF1KB3 RGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTS
       ::::::::::                             : :::::::::::::::::::
CCDS77 RGLSRKHIIE-----------------------------EIVRAMTHVINQGMAMYWGTS
              190                                    200       210 

      190       200       210       220       230       240        
pF1KB3 RWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLAC
       :::.::::::::::::::. ::.:::::::.:::::::::::::.:::::::::::::::
CCDS77 RWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLAC
             220       230       240       250       260       270 

      250       260       270       280       290       300        
pF1KB3 GIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAI
       ::.:::: .:.:  :::::: :::::..:.:::::.:: :::.:. :::::::::::::.
CCDS77 GIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAV
             280       290       300       310       320       330 

      310       320       330       340       350       360       
pF1KB3 AWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYRS
       :::::::::::::::.:. .::.::.::::::::..: ...:::.:: :::::::::::
CCDS77 AWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
             340       350       360       370       380       390




367 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:07:18 2016 done: Thu Nov  3 14:07:19 2016
 Total Scan time:  2.640 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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