GENSCAN 1.0	Date run:  3-Nov-116	Time: 14:00:01

Sequence gi568815576r:38194109_38414157 : 220049 bp : 50.39% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   4565   4622   58  1  1  104    7    70 0.049   1.97
 1.02 Intr +  11506  11656  151  2  1   84   53    68 0.393   2.12
 1.03 Intr +  14344  14521  178  1  1   66   22    93 0.270   0.42
 1.04 Intr +  17547  17824  278  2  2   80  100    63 0.592   3.01
 1.05 Intr +  19715  19781   67  2  1  115  100    30 0.909   5.81
 1.06 Term +  20312  20770  459  1  0  104   39   992 0.998  90.99
 1.07 PlyA +  21925  21930    6                               1.05

 2.09 PlyA -  22309  22304    6                               1.05
 2.08 Term -  27602  27361  242  0  2  120   43   353 0.998  30.19
 2.07 Intr -  30871  30677  195  2  0   54   86   418 0.847  37.59
 2.06 Intr -  31485  31316  170  2  2   74  105   339 0.991  33.79
 2.05 Intr -  32762  32671   92  2  2  128   54   169 0.999  16.29
 2.04 Intr -  36636  36561   76  2  1  124   89    25 0.020   5.72
 2.03 Intr -  37226  37136   91  0  1   74   61    84 0.013   3.35
 2.02 Intr -  52028  51827  202  2  1   76   72   532 0.754  49.26
 2.01 Init -  53853  53662  192  0  0  100   80   311 0.991  28.47
 2.00 Prom -  61802  61763   40                              -7.16

 3.04 PlyA -  62546  62541    6                               1.05
 3.03 Term -  64735  64658   78  1  0  101   38    36 0.355  -2.34
 3.02 Intr -  69242  69089  154  1  1   47   80   123 0.621   7.47
 3.01 Init -  70352  70108  245  2  2   51   89   185 0.993  10.11
 3.00 Prom -  74964  74925   40                              -3.26

 4.00 Prom +  75018  75057   40                              -8.76
 4.01 Init +  76484  76493   10  1  1   94  109    13 0.323   3.37
 4.02 Intr +  77952  78118  167  1  2  100  107   -18 0.344   0.98
 4.03 Term +  79694  79882  189  1  0   76   40   125 0.298   3.95
 4.04 PlyA +  80563  80568    6                               1.05

 5.11 PlyA -  82665  82660    6                               1.05
 5.10 Term -  90182  90055  128  0  2  108   43    69 0.393   2.84
 5.09 Intr -  96547  96466   82  1  1   97   64    69 0.766   4.61
 5.08 Intr - 100140 100001  140  1  2   97   99   -35 0.548  -1.32
 5.07 Intr - 100426 100234  193  1  1  113   93   255 0.994  27.57
 5.06 Intr - 104826 104237  590  1  2   41   -7   527 0.512  30.84
 5.05 Intr - 105957 105787  171  1  0   97   76   357 0.999  35.31
 5.04 Intr - 106844 106616  229  2  1  108   73   546 0.999  52.54
 5.03 Intr - 108901 108753  149  2  2   52  101   283 0.995  25.95
 5.02 Intr - 109140 109030  111  1  0  103   89   204 0.966  22.35
 5.01 Init - 120049 119974   76  1  1   91  106   112 0.913  14.55
 5.00 Prom - 127537 127498   40                              -7.16

 6.11 PlyA - 128869 128864    6                               1.05
 6.10 Term - 140826 140728   99  0  0   52   49   103 0.923   0.93
 6.09 Intr - 142093 141994  100  0  1   29   61   115 0.623   3.01
 6.08 Intr - 142598 142500   99  1  0  100   58    83 0.643   5.73
 6.07 Intr - 152592 152421  172  1  1   41   95   104 0.291   5.40
 6.06 Intr - 153432 153381   52  0  1   67   96    23 0.158  -0.52
 6.05 Intr - 156891 156695  197  1  2   34   35   283 0.801  16.73
 6.04 Intr - 157713 157661   53  2  2   79   75    28 0.160  -0.85
 6.03 Intr - 167452 167291  162  0  0   53  110    96 0.853   7.39
 6.02 Intr - 171046 171019   28  2  1   46   89    16 0.042  -5.33
 6.01 Init - 184034 183968   67  2  1   46   98    82 0.668   6.23
 6.00 Prom - 186527 186488   40                              -3.76

 7.00 Prom + 188539 188578   40                              -4.06
 7.01 Init + 190222 190572  351  0  0   79   86    95 0.758   5.56
 7.02 Term + 190628 191323  696  1  0   75   53   261 0.987  14.85
 7.03 PlyA + 192141 192146    6                               1.05

 8.03 PlyA - 192706 192701    6                               1.05
 8.02 Term - 197167 197157   11  2  2   97   54     3 0.098  -3.84
 8.01 Init - 203308 203200  109  1  1   76  111    95 0.751   8.98
 8.00 Prom - 213340 213301   40                              -2.56


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -    502    437   66  1  0  113   44    85 0.920   4.54
S.002 Intr -    769    582  188  2  2  104   34   110 0.810   6.61
S.003 Init -  34349  34215  135  2  0   42   99   124 0.929   7.05
S.004 Term -  50972  50764  209  0  2   55   43   109 0.833   0.60


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576r:38194109_38414157|GENSCAN_predicted_peptide_1|396_aa
MALDLDQKGSYVYGKQSLQEDVMNLQTLEVSSAGFQGKKPGRGGGGRHRRQRTPGFQSAT
ATKQWLGCLSICTVSANRPKEAAGEEEELETGPGGTELRFGLEPGLVTSWVMASETLTIH
PSPVPAPCQGESEAQKEWLTYQNHTTRERDHPQKAPGVSGTKVHVLSISAPCPWETPRSC
QNVSEAEPTREVNPVDSSRNQDLDLAFALCCPQNWVMLFPIRSAAQRAPSANMSVDPLSS
KALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLKNRGYAASC
RVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARSVAAARGPA
TLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS

>gi568815576r:38194109_38414157|GENSCAN_predicted_CDS_1|1191_bp
atggcccttgatcttgaccagaaagggagctatgtctatgggaagcagtccctgcaggaa
gacgtcatgaacctgcagaccctggaggtcagctctgctggcttccaagggaagaagcca
gggagaggtggtggtggccgacatagaagacagaggacccctgggttccagtccgccacg
gctaccaaacagtggcttggttgcctcagcatctgtactgtctctgccaacaggcccaag
gaagcagctggagaggaggaagaattagagacagggccaggaggtactgaactacgtttc
ggcttggaacccggcttggtgacaagctgggtgatggcgtcagagactctgaccatccac
ccttccccagtgcctgctccctgccagggggaaagtgaggcacagaaagagtggctgacc
tatcagaaccacacaactagagagcgagaccacccccaaaaggccccaggtgtgtctggc
accaaggtccatgtgctttccatttctgcaccttgtccctgggagacaccccggtcctgc
cagaatgtgtcagaggctgagccaacccgtgaggtcaaccctgtagacagctcaaggaac
caggacttggatctggcttttgccctctgctgtccacaaaactgggtgatgctctttccg
atacggtctgcagcccagagggcaccttctgcaaacatgtctgtggatcccctatccagc
aaagctctaaagatcaagcgagagctgagcgagaacacgccgcacctgtcggacgaggcg
ctgatggggctgtcggtgcgcgagctgaaccggcatctgcgcgggctctccgccgaggag
gtgacacggctcaagcagcggcgccgcacactcaaaaaccgtggctacgccgccagctgc
cgcgtgaagcgcgtgtgccagaaggaggagctgcagaagcagaagtcggagctggagcgc
gaggtggacaagctggcgcgcgagaacgccgccatgcgcctggagctcgacgcgctgcgc
ggcaagtgcgaggcgctgcagggcttcgcgcgctccgtggccgccgcccgcgggcccgcc
acgctcgtggcgccggccagcgtcatcaccatcgtcaagtccaccccgggctcggggtct
ggccccgcccacggcccggaccccgcccacggcccggcctcctgctcctag

>gi568815576r:38194109_38414157|GENSCAN_predicted_peptide_2|419_aa
MTVRGDVLAPDPASPTTAAASPSVSVIPEGSPTAMEQPVFLMTTAAQAISGFFVWTALLI
TCHQEGPQLTPHLCPQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYY
VYFGTVRDCYEALVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCMYGTCCLWGKTYSIG
FLRFCKQATLQFCVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYA
LFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIHSARVSVGEG
TVAAGYQDFIICVEMFFAALALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPHD
IVQDAIHNFSPAYQQYTQQSTLEPGPTWRGGAHGLSRSHSLSGARDNEKTLLLSSDDEF

>gi568815576r:38194109_38414157|GENSCAN_predicted_CDS_2|1260_bp
atgacagtgaggggggatgtgctggccccggatccagcgtcgcccacgaccgcagcagcc
tcgcccagcgtctccgtgatccccgagggcagccccactgccatggagcagcctgtgttc
ctgatgacaactgccgctcaggccatctctggcttcttcgtgtggacggccctgctcatc
acatgccaccaggagggtccccagctgaccccacacctctgcccccagatctacatgcac
ctgcgctgctacagctgccccaacgagcagcgctacatcgtgcgcatcctcttcatcgtg
cccatctacgcctttgactcctggctcagcctcctcttcttcaccaacgaccagtactac
gtgtacttcggcaccgtccgcgactgctatgaggccttggtcatctataatttcctgagc
ctgtgctatgagtacctaggaggagaaagttccatcatgtcggagatcagaggaaaaccc
attgagtccagctgtatgtatggcacctgctgcctctggggaaagacttattccatcgga
tttctgaggttctgcaaacaggccaccctgcagttctgtgtggtgaagccactcatggcg
gtcagcactgtggtcctccaggccttcggcaagtaccgggatggggactttgacgtcacc
agtggctacctctacgtgaccatcatctacaacatctccgtcagcctggccctctacgcc
ctcttcctcttctacttcgccacccgggagctgctcagcccctacagccccgtcctcaag
ttcttcatggtcaagtccgtcatctttctttccttctggcaaggcatgctcctggccatc
ctggagaagtgtggggccatccccaaaatccactcggcccgcgtgtcggtgggcgagggc
accgtggctgccggctaccaggacttcatcatctgtgtggagatgttctttgcagccctg
gccctgcggcacgccttcacctacaaggtctatgctgacaagaggctggacgcacaaggc
cgctgtgcccccatgaagagcatctccagcagcctcaaggagaccatgaacccgcacgac
atcgtgcaggacgccatccacaacttctcacctgcctaccagcagtacacgcagcagtcc
accctggagcctgggcccacctggcgtggtggcgcccacggcctctcccgctcccacagc
ctcagtggcgcccgcgacaacgagaagactctcctgctcagctctgatgatgaattctag

>gi568815576r:38194109_38414157|GENSCAN_predicted_peptide_3|158_aa
MARLEALGPLGLCTPTPSHLACLLIFMGAWGDQLWLLVIVAQVTVHTSWDQDIRALRRVK
GPSGPSLLLTAGKCKRVDQSTKGSLGRHRKSVIVMPLEGVLVMGDCLFAGDPMYLLIAEA
GECTPFQEIKMGQNSERSEIPKVLLSLQQTNFCCKNLT

>gi568815576r:38194109_38414157|GENSCAN_predicted_CDS_3|477_bp
atggctagactggaagcacttggccctcttgggctctgcacccccaccccctcccacctg
gcctgcctgctcatcttcatgggcgcctggggagaccaattatggctgcttgtcatagtg
gctcaggtcaccgttcacacttcctgggaccaggacatcagagccctgagaagggtcaag
gggccaagtgggcctagccttttactgacagctgggaaatgcaagcgtgtggaccagagc
accaaggggtctctgggcagacaccgcaagtcggtgattgtgatgcctctggagggggtg
ctggtcatgggagattgcttgtttgctggagatcccatgtaccttttgattgctgaagca
ggtgaatgtacgcctttccaagaaattaaaatgggccagaattcagaacgctcagaaatc
ccaaaggttcttctaagtctgcagcagactaatttctgctgcaaaaatctgacctga

>gi568815576r:38194109_38414157|GENSCAN_predicted_peptide_4|121_aa
MVFGIRHANTCFAPKCPGKEGGVKRLALYNTSRGDMYWESMPNPQHNCLALAWSHPALES
PGQNSESAVNECPPSARYPIRQAGDPVGSTCKIDLDSDVCHSSSSATTLVQYLHRIIAEF
C

>gi568815576r:38194109_38414157|GENSCAN_predicted_CDS_4|366_bp
atggtcttcggtatcaggcatgcaaatacctgctttgccccaaaatgccctggaaaggag
ggaggagtaaaacgtctggccttatacaacacctccagaggggatatgtattgggaatcc
atgcccaacccccagcataactgccttgccttggcctggagccacccagcactggagtcc
ccaggccagaactcggagtcagctgtgaatgaatgccccccttctgcccgctacccaata
aggcaggcaggagatcctgttggctctacctgcaaaatagatctagactcagatgtctgc
cactcctcctccagtgctaccaccctggtccagtatttgcacaggattattgcagagttc
tgctaa

>gi568815576r:38194109_38414157|GENSCAN_predicted_peptide_5|622_aa
MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQ
GGVGIPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH
SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYA
SINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVL
CKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKFVSHLE
AKAGLGDWMGKALTQRARVSWWREGLPTDGRYELDSVVDLTGVPEPSSLIRADSLCHHGQ
QGPGRALSPVGTRRIWLHLGSLLGARSRAWVVLAAPPAALIAAYTVLLLLFCTSQVATCT
MAPRASLDPVMVLAFFLVMGPWGAARNPEDVDRERREHEREERMGQLRGSATRALPPGPP
TGATANRLRSAAEPVASTPASRIQPAGNTSPRAISRVDRERKVSMRLHRGAPANVSSSDL
TGRQEVSRIPASQGLSLQTRKWVLLGAAGVSEEQALALKAETDVETVMAKNAQSPWPLSQ
SLQHKRPQEHNWSLEKSTHSKL

>gi568815576r:38194109_38414157|GENSCAN_predicted_CDS_5|1869_bp
atggagctacgtgtggggaacaagtaccgcctgggacggaagatcgggagcgggtccttc
ggagatatctacctgggtgccaacatcgcctctggtgaggaagtcgccatcaagctggag
tgtgtgaagacaaagcacccccagctgcacatcgagagcaagttctacaagatgatgcag
ggtggcgtggggatcccgtccatcaagtggtgcggagctgagggcgactacaacgtgatg
gtcatggagctgctggggcctagcctcgaggacctgttcaacttctgttcccgcaaattc
agcctcaagacggtgctgctcttggccgaccagatgatcagccgcatcgagtatatccac
tccaagaacttcatccaccgggacgtcaagcccgacaacttcctcatggggctggggaag
aagggcaacctggtctacatcatcgacttcggcctggccaagaagtaccgggacgcccgc
acccaccagcacattccctaccgggaaaacaagaacctgaccggcacggcccgctacgct
tccatcaacacgcacctgggcattgagcaaagccgtcgagatgacctggagagcctgggc
tacgtgctcatgtacttcaacctgggctccctgccctggcaggggctcaaagcagccacc
aagcgccagaagtatgaacggatcagcgagaagaagatgtcaacgcccatcgaggtcctc
tgcaaaggctatccctccgaattctcaacatacctcaacttctgccgctccctgcggttt
gacgacaagcccgactactcttacctacgtcagctcttccgcaacctcttccaccggcag
ggcttctcctatgactacgtctttgactggaacatgctgaaattcgtgagtcacctggag
gccaaggcgggcttgggggactggatggggaaggccctgactcagagggccagagtgagc
tggtggcgggaggggctcccgacagacgggaggtacgagctggacagtgtggttgacctc
actggggtcccagagccctccagcctcatccgtgctgacagcttgtgccaccatgggcag
cagggcccaggcagggcgctgtctcccgtcggaacaaggaggatctggcttcacctgggg
tccctcctgggtgcccgcagcagggcatgggtggtgctggcggcgccccctgctgccctg
attgctgcctacaccgtcctgctgctcctgttctgcacatcccaggtggctacctgcacc
atggcccctcgggccagcctggacccagtcatggtgcttgctttcttcttggtcatgggc
ccctggggtgcagcccggaatcccgaggatgtggaccgggagcggcgagaacacgaacgc
gaggagaggatggggcagctacgggggtccgcgacccgagccctgccccctggcccaccc
acgggggccactgccaaccggctccgcagtgccgccgagcccgtggcttccacgccagcc
tcccgcatccagccggctggcaatacttctcccagagcgatctcgcgggtcgaccgggag
aggaaggtgagtatgaggctgcacaggggtgcgcccgccaacgtctcctcctcagacctc
actgggcggcaagaggtctcccggatcccagcctcacagggcctctccctgcagacccgg
aagtgggtcttgctgggagcagcaggagtcagtgaggaacaagccctcgccctgaaggca
gaaacagatgtggaaacagttatggctaagaatgctcagtccccatggcctctttcccag
agcctacagcacaagcgcccacaggaacacaactggtcattggagaagtccacacattcc
aagctctga

>gi568815576r:38194109_38414157|GENSCAN_predicted_peptide_6|342_aa
MIGEELLVVFEREKAENYKGKQDLVLYGDIVKLFGVFLVLLDVTLVLADLIFTDSKLYIP
LEYRSISLAIALFFLMDVLLRVFVEGPVYTIGLPPSDLRAGKEETVLVRERHQQESQRFL
LLSIITITIILITITVTVIIIITIMDFKEVQRISSSGQSESCSVEAGGWVELPSSFSAAF
LILQSKELRACWGNSPRNTSLAPSVDPEEGAPRRSGPGPNSEGSSLQNQPLELRDSPTAL
RTPWCWSGPERSRVGCEEKETGLSEAPHPSEVIPYSSAPQRSPHLQAQVCALRISKAGQQ
ASGERQQQLGKGLGPTEGIEGPENGKCWGEKDGDELLGKPPE

>gi568815576r:38194109_38414157|GENSCAN_predicted_CDS_6|1029_bp
atgattggtgaagagttactagtggtatttgaacgtgagaaggcagaaaattacaagggc
aagcaagacttggttctgtatggtgacattgtcaaactatttggagttttcctcgtctta
ctggatgtcactctcgtccttgccgacctaattttcactgacagcaaactttatattcct
ttggagtatcgttctatttctctagctattgccttattttttctcatggatgttcttctt
cgagtatttgtagaagggcccgtctataccattgggctgcccccttcagacctccgggca
ggaaaagaagagactgtactggtcagagaaagacatcagcaggagagccagagattcctc
ctcctctccatcatcaccatcaccattattctcatcaccatcaccgtcaccgtcatcatc
atcatcaccatcatggacttcaaagaagttcaaagaatttcctcctctggccagagtgaa
tcctgttctgtggaagcaggaggctgggtagagctgccctcttccttctccgcagctttt
ctcatcctgcaaagcaaggagctgagagcctgctggggaaacagtcctagaaacacctcg
ctagcacccagtgtggacccagaggaaggggctcctaggagaagtggcccagggcccaac
tcggaaggaagcagccttcagaatcagccgctggagctgcgggactcgcccacggccctc
aggactccctggtgttggagcgggccggagagaagtagagtgggctgcgaggagaaggaa
acaggcctttcggaggctcctcatccctcggaggtcatcccttactccagcgctccccag
cggagtcctcacctgcaggcacaggtgtgcgcacttcgcatctcgaaggccggccagcaa
gcttcaggtgagcgccagcagcagctggggaaaggacttggaccaactgaaggtattgag
ggaccagagaacgggaagtgctggggagagaaggacggggatgagctcttgggaaaaccc
ccagaatga

>gi568815576r:38194109_38414157|GENSCAN_predicted_peptide_7|348_aa
MIVYLENTIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIAS
KRIKYLGIQLTRDVKDLFKENYKPLLKEIKKDTNKWKNIPCSWVGRINIVKMAILPKNWK
KLKFIWNQKRAHIAKSILSQKNKAGGITLPDFKLYYEATVTKTAWYWYRNRDIDQWNTTE
PSEIMPHIYNYLIFDKPEKNKKWGKDSLFNKWCWESWLAICRKLKLDPFLTPYTKINSRW
IKDLNVRPKTIKTLEENLGITIQDIGMGKDFMSKTPKAMATKAKIDKWDLIKLKSFCTAK
ETTIRVNRQTTKWEKIFATYSSDKGLISRICNELKQIYKKKTNNPIKK

>gi568815576r:38194109_38414157|GENSCAN_predicted_CDS_7|1047_bp
atgattgtatatctagaaaacaccattgtctcagcccaaaatctccttaagctgataagc
aacttcagcaaagtctcaggatacaaaatcaatgtacaaaaatcacaagcattcttatac
accaacaacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttca
aagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggag
aactacaaaccactgctcaaggaaataaaaaaggatacaaacaaatggaagaacattcca
tgctcatgggtaggaagaatcaatatcgtgaaaatggccatactgcccaagaattggaaa
aaactaaagttcatatggaaccaaaaaagagcccacatcgccaagtcaatcctaagccaa
aagaacaaagctggaggcatcacactacctgacttcaaactatactacgaggctacagta
accaaaacagcatggtactggtaccgaaacagagatatagatcaatggaacacaacagag
ccctcagaaataatgccgcatatctacaactatctgatctttgacaaacctgagaaaaac
aagaaatggggaaaggattccctatttaataaatggtgctgggaaagctggctagccata
tgcagaaagctgaaactggatcccttccttacgccttatacaaaaatcaattcaagatgg
attaaagacttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggcatt
accattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggca
acaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaa
gaaactaccatcagagtgaacaggcaaactacaaaatgggagaaaattttcgcaacctac
tcatctgacaaagggctaatatccagaatctgcaatgaactcaaacaaatttacaagaaa
aaaacaaacaaccccatcaaaaagtga

>gi568815576r:38194109_38414157|GENSCAN_predicted_peptide_8|39_aa
MVEGRRALLGAWEAGFRAAWAVPPEGQDPTAGRAPQLLC

>gi568815576r:38194109_38414157|GENSCAN_predicted_CDS_8|120_bp
atggtggaggggcggagggcgctgctgggggcctgggaggctggatttagggctgcctgg
gcggtaccgcccgaggggcaagacccgacagcggggcgcgcgccgcaacttctttgttga