Result of FASTA (ccds) for pF1KB3766
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3766, 504 aa
  1>>>pF1KB3766 504 - 504 aa - 504 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4943+/-0.0011; mu= 8.1153+/- 0.065
 mean_var=138.7456+/-27.523, 0's: 0 Z-trim(107.1): 69  B-trim: 0 in 0/51
 Lambda= 0.108884
 statistics sampled from 9314 (9381) to 9314 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.288), width:  16
 Scan time:  2.550

The best scores are:                                      opt bits E(32554)
CCDS9479.1 DNAJC3 gene_id:5611|Hs108|chr13         ( 504) 3318 533.2 2.6e-151
CCDS45677.1 DNAJC7 gene_id:7266|Hs108|chr17        ( 494)  638 112.2 1.4e-24
CCDS45678.1 DNAJC7 gene_id:7266|Hs108|chr17        ( 438)  609 107.6 2.9e-23


>>CCDS9479.1 DNAJC3 gene_id:5611|Hs108|chr13              (504 aa)
 initn: 3318 init1: 3318 opt: 3318  Z-score: 2830.1  bits: 533.2 E(32554): 2.6e-151
Smith-Waterman score: 3318; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504)

               10        20        30        40        50        60
pF1KB3 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 QDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 QDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHR
              430       440       450       460       470       480

              490       500    
pF1KB3 SWNSWQGFNPFSSGGPFRFKFHFN
       ::::::::::::::::::::::::
CCDS94 SWNSWQGFNPFSSGGPFRFKFHFN
              490       500    

>>CCDS45677.1 DNAJC7 gene_id:7266|Hs108|chr17             (494 aa)
 initn: 323 init1: 187 opt: 638  Z-score: 555.0  bits: 112.2 E(32554): 1.4e-24
Smith-Waterman score: 638; 28.2% identity (62.8% similar) in 479 aa overlap (36-503:27-493)

          10        20        30        40        50        60     
pF1KB3 SVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQFHAAVD
                                     ..:   : :.   :  .  .: . .  :.:
CCDS45     MAAAAECDVVMAATEPELLDDQEAKREAETFKEQGNAYYAKKDYNEAYNYYTKAID
                   10        20        30        40        50      

          70        80        90       100       110       120     
pF1KB3 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAE
         : :   :  ::.... .:. . :: :  . ..:  .:. ..:..:.  :. :.   : 
CCDS45 MCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAAC
         60        70        80        90       100       110      

         130       140       150       160       170       180     
pF1KB3 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV
        .:...:.    .... .::... ... ... .. : . : . :.  ..  .:. ::   
CCDS45 RSFQRALEL---DHKNAQAQQEFKNANAVMEYEKIAETDFEKRDFRKVVFCMDRALEFAP
        120          130       140       150       160       170   

         190       200       210       220        230       240    
pF1KB3 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY-KISTLYYQLGDHELSLSE
          ... :.:::.   :.  .: :  .   .. . :..:.: .   :::.    : ... 
CCDS45 ACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYE-DCIEKAVQF
           180       190       200       210       220        230  

          250        260       270       280       290       300   
pF1KB3 VRECLKLDQDHKR-CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE
         . :..  ::.. :.:  ...: :.   :.... ...: :  :   :  ..  .:.   
CCDS45 FVQALRMAPDHEKACIAC-RNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPN---
            240       250        260       270       280           

           310           320       330       340       350         
pF1KB3 YTVRSKERI-CH---CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEA
        ..... .. :.     :: .:  .::. :.......   ..:   ::. :.  :.:.::
CCDS45 -NIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEA
       290       300       310       320       330       340       

     360       370       380       390       400       410         
pF1KB3 IQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLAL
       ..::: . . .:. .. .. :..::  ::.:...:::::::: .::...:: ::::: ::
CCDS45 VRDYEKVYQ-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRAL
       350        360       370       380       390       400      

     420         430       440       450       460       470       
pF1KB3 QWHPDNFQ--NEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNP
       . :::  .  . : .:. :::: ... :  .::::. . ..:.:.: :: :... :  .:
CCDS45 MHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMGDFDP
        410       420       430       440       450        460     

          480       490       500    
pF1KB3 ---FHRSWNSWQGFNPFSSGGPFRFKFHFN
          :.  ...  ::. : ..::  : :.: 
CCDS45 NNIFKAFFGGPGGFS-FEASGPGNFFFQFG
         470       480        490    

>>CCDS45678.1 DNAJC7 gene_id:7266|Hs108|chr17             (438 aa)
 initn: 323 init1: 187 opt: 609  Z-score: 531.1  bits: 107.6 E(32554): 2.9e-23
Smith-Waterman score: 609; 28.8% identity (64.1% similar) in 448 aa overlap (68-503:3-437)

        40        50        60        70        80        90       
pF1KB3 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV
                                     : :   :  ::.... .:. . :: :  . 
CCDS45                             MCPKNASYYGNRAATLMMLGRFREALGDAQQS
                                           10        20        30  

       100       110       120       130       140       150       
pF1KB3 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL
       ..:  .:. ..:..:.  :. :.   :  .:...:.    .... .::... ... ... 
CCDS45 VRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL---DHKNAQAQQEFKNANAVMEY
             40        50        60           70        80         

       160       170       180       190       200       210       
pF1KB3 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL
       .. : . : . :.  ..  .:. ::      ... :.:::.   :.  .: :  .   ..
CCDS45 EKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRM
      90       100       110       120       130       140         

       220        230        240       250        260       270    
pF1KB3 KNDNTEAFY-KISTLYYQLGDH-ELSLSEVRECLKLDQDHKR-CFAHYKQVKKLNKLIES
        . :..:.: .   :::.  :  : ...   . :..  ::.. :.:  ...: :.   :.
CCDS45 DSTNADALYVRGLCLYYE--DCIEKAVQFFVQALRMAPDHEKACIAC-RNAKALKAKKED
     150       160         170       180       190        200      

          280       290       300       310           320       330
pF1KB3 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI-CH---CFSKDEKPVEAIRVCS
       ... ...: :  :   :  ..  .:.    ..... .. :.     :: .:  .::. :.
CCDS45 GNKAFKEGNYKLAYELYTEALGIDPN----NIKTNAKLYCNRGTVNSKLRKLDDAIEDCT
        210       220       230           240       250       260  

              340       350       360       370       380       390
pF1KB3 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS
       ......   ..:   ::. :.  :.:.::..::: . . .:. .. .. :..::  ::.:
CCDS45 NAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ-TEKTKEHKQLLKNAQLELKKS
            270       280       290       300        310       320 

              400       410       420         430       440        
pF1KB3 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ--NEEEKKKAEKKFIDIAAAKEV
       ...:::::::: .::...:: ::::: ::. :::  .  . : .:. :::: ... :  .
CCDS45 KRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTI
             330       340       350       360       370       380 

      450       460       470          480       490       500    
pF1KB3 LSDPEMRKKFDDGEDPLDAESQQGGGGNP---FHRSWNSWQGFNPFSSGGPFRFKFHFN
       ::::. . ..:.:.: :: :... :  .:   :.  ...  ::. : ..::  : :.: 
CCDS45 LSDPKKKTRYDSGQD-LDEEGMNMGDFDPNNIFKAFFGGPGGFS-FEASGPGNFFFQFG
             390        400       410       420        430        




504 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:55:26 2016 done: Thu Nov  3 13:55:26 2016
 Total Scan time:  2.550 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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