Result of FASTA (ccds) for pF1KB3492
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3492, 397 aa
  1>>>pF1KB3492 397 - 397 aa - 397 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4675+/-0.000952; mu= 15.7847+/- 0.057
 mean_var=61.6654+/-12.344, 0's: 0 Z-trim(103.4): 29  B-trim: 0 in 0/50
 Lambda= 0.163325
 statistics sampled from 7373 (7388) to 7373 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.591), E-opt: 0.2 (0.227), width:  16
 Scan time:  2.500

The best scores are:                                      opt bits E(32554)
CCDS5268.1 ACAT2 gene_id:39|Hs108|chr6             ( 397) 2583 617.4  7e-177
CCDS8339.1 ACAT1 gene_id:38|Hs108|chr11            ( 427) 1030 251.5 1.1e-66
CCDS11939.1 ACAA2 gene_id:10449|Hs108|chr18        ( 397) 1001 244.7 1.1e-64
CCDS2673.1 ACAA1 gene_id:30|Hs108|chr3             ( 424)  841 207.0 2.7e-53
CCDS46794.1 ACAA1 gene_id:30|Hs108|chr3            ( 331)  350 91.3 1.5e-18


>>CCDS5268.1 ACAT2 gene_id:39|Hs108|chr6                  (397 aa)
 initn: 2583 init1: 2583 opt: 2583  Z-score: 3289.1  bits: 617.4 E(32554): 7e-177
Smith-Waterman score: 2583; 99.7% identity (100.0% similar) in 397 aa overlap (1-397:1-397)

               10        20        30        40        50        60
pF1KB3 MNAGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MNAGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGME
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 NMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 NMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 VAVLSQNRTENAQKAGHFDKEIVPVLVSTRRGLIEVKTDEFPRHGSNIEAMSKLKPYFLT
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS52 VAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYFLT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 DGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 DGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 IKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 IKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGC
              310       320       330       340       350       360

              370       380       390       
pF1KB3 RILVTLLHTLERMGRSRGVAALCIGGGMGIAMCVQRE
       :::::::::::::::::::::::::::::::::::::
CCDS52 RILVTLLHTLERMGRSRGVAALCIGGGMGIAMCVQRE
              370       380       390       

>>CCDS8339.1 ACAT1 gene_id:38|Hs108|chr11                 (427 aa)
 initn: 993 init1: 395 opt: 1030  Z-score: 1310.9  bits: 251.5 E(32554): 1.1e-66
Smith-Waterman score: 1030; 43.8% identity (74.4% similar) in 390 aa overlap (8-396:42-426)

                                      10        20        30       
pF1KB3                        MNAGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTV
                                     ::::::.:: :::: :.:. .:.  ::: .
CCDS83 ARSRSPLLRRLVQEIRYVERSYVSKPTLKEVVIVSATRTPIGSFLGSLSLLPATKLGSIA
              20        30        40        50        60        70 

        40        50        60        70        80        90       
pF1KB3 IKEVLKRATVAPEDVSEVIFGHVLAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLK
       :. ....: .  :.:.:. .:.:: .: :: :.::: .:::.: :.:  . . .:.::.:
CCDS83 IQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMK
              80        90       100       110       120       130 

       100       110       120       130       140       150       
pF1KB3 AVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHN
       :. .: ::.  : ....::::::.::..:..   : ..  : . : : :. :::::....
CCDS83 AIMMASQSLMCGHQDVMVAGGMESMSNVPYVMN-RGSTPYGGVKLEDLIVKDGLTDVYNK
             140       150       160        170       180       190

       160       170       180       190       200       210       
pF1KB3 CHMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTR-RGLIEV
        :::  :::.::: ...:..::  :. : .:.. : .::.: .:..:: :... .  . :
CCDS83 IHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVV
              200       210       220       230       240       250

        220       230       240       250       260       270      
pF1KB3 KTDEFPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTP
       : ::  ..  ..  . :::  :  .. :::: :::: .::::::.:::  . : . ..::
CCDS83 KEDEEYKR-VDFSKVPKLKTVFQKEN-GTVTAANASTLNDGAAALVLMTADAAKRLNVTP
               260       270        280       290       300        

        280       290       300       310       320       330      
pF1KB3 LARIVSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELG
       :::::......:::  . :.:. : ....  .: . ::. ..:.::::. :  : .: : 
CCDS83 LARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLE
      310       320       330       340       350       360        

        340       350       360       370       380       390      
pF1KB3 LNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERMGRSRGVAALCIGGGMGIAMCVQR
       ..:.::::.:::..::::.: :: ::.  : :.: ..:.  :.:..: ::: . :: .:.
CCDS83 IDPQKVNINGGAVSLGHPIGMSGARIVGHLTHAL-KQGE-YGLASICNGGGGASAMLIQK
      370       380       390       400         410       420      

        
pF1KB3 E
        
CCDS83 L
        

>>CCDS11939.1 ACAA2 gene_id:10449|Hs108|chr18             (397 aa)
 initn: 1023 init1: 534 opt: 1001  Z-score: 1274.5  bits: 244.7 E(32554): 1.1e-64
Smith-Waterman score: 1001; 42.7% identity (72.1% similar) in 391 aa overlap (8-395:7-394)

               10        20        30        40        50        60
pF1KB3 MNAGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHV
              : .:.: :: .:...: :    . ::.  . : .:. . :.:: :. ::.:.:
CCDS11  MALLRGVFVVAAKRTPFGAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNV
                10        20        30        40        50         

               70         80        90       100       110         
pF1KB3 LAAGCGQNPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGM
       : ..     . :.... .:::  .:: . . .::::....  . : : . .. .:. :: 
CCDS11 LQSSSDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGT
      60        70        80        90       100       110         

     120       130         140       150       160       170       
pF1KB3 ENMSKAPHLAY-LRTGVKIG-EMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSRED
       :.::.::. .  .: :.:.: .. : ::.  . :::   .  :..::::.: : ..:::.
CCDS11 ESMSQAPYCVRNVRFGTKLGSDIKLEDSLWVS-LTDQHVQLPMAMTAENLAVKHKISREE
     120       130       140       150        160       170        

       180       190       200       210       220       230       
pF1KB3 QDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRRGLIEVKTDEFPRHGSNIEAMSKLKPY
        :: :. ::.: . :. ::.:. :..:. :.:..:   ...::  :  ...: ..:: : 
CCDS11 CDKYALQSQQRWKAANDAGYFNDEMAPIEVKTKKGKQTMQVDEHARPQTTLEQLQKLPPV
      180       190       200       210       220       230        

       240       250       260       270       280       290       
pF1KB3 FLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGP
       :  :::  :: .::::. :::.::.. ... . :...:::::::..   : .::::::::
CCDS11 FKKDGT--VTAGNASGVADGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPSIMGIGP
      240         250       260       270       280       290      

       300       310       320       330       340       350       
pF1KB3 IPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGA
       .:::. :. ::: ::.:.:. :.:::::    :. . : :.  :.:..:::::::::::.
CCDS11 VPAISGALKKAGLSLKDMDLVEVNEAFAPQYLAVERSLDLDISKTNVNGGAIALGHPLGG
        300       310       320       330       340       350      

       360       370       380       390        
pF1KB3 SGCRILVTLLHTLERMGRSRGVAALCIGGGMGIAMCVQRE 
       :: :: . :.: :.: : . .:.. :::::.:::. .:   
CCDS11 SGSRITAHLVHELRRRGGKYAVGSACIGGGQGIAVIIQSTA
        360       370       380       390       

>>CCDS2673.1 ACAA1 gene_id:30|Hs108|chr3                  (424 aa)
 initn: 817 init1: 414 opt: 841  Z-score: 1070.3  bits: 207.0 E(32554): 2.7e-53
Smith-Waterman score: 841; 41.6% identity (66.4% similar) in 399 aa overlap (3-391:33-416)

                                           10        20         30 
pF1KB3                             MNAGSDPVVIVSAARTIIGSFN-GALAAVPVQ
                                     :..  ::.: . :: :   . :..  .  .
CCDS26 RLQVVLGHLRGPADSGWMPQAAPCLSGAPQASAADVVVVHGRRTAICRAGRGGFKDTTPD
             10        20        30        40        50        60  

              40        50        60        70        80        90 
pF1KB3 DLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQNPVRQASVGAGIPYSVPAWSCQMI
       .: :.:.  ::: ... ::.....  :.::  : :   .: :.  . :: .::  . .  
CCDS26 ELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQ
             70        80        90       100       110       120  

             100       110       120       130       140       150 
pF1KB3 CGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGL
       :.:::.::   . .:  :. .: .: :.:.:: : .          :.     : : .  
CCDS26 CSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADR----------GNPGNITSRLME--
            130       140       150                 160       170  

               160       170       180       190       200         
pF1KB3 TDAFHNC--HMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVS-
        .  ..:   ::::.::::... .::: ::  :. ::...  ::. : :. ::::: .. 
CCDS26 KEKARDCLIPMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTV
              180       190       200       210       220       230

           210       220       230       240       250       260   
pF1KB3 -----TRRGLIEVKTDEFPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVL
            :.:. : :  ::  : ....:...:::: :  ::  ..: .:.: ..:::::..:
CCDS26 HDDKGTKRS-ITVTQDEGIRPSTTMEGLAKLKPAFKKDG--STTAGNSSQVSDGAAAILL
               240       250       260         270       280       

           270       280       290       300       310       320   
pF1KB3 MKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEA
        ..:.:.. ::  :. . :.. ::: :.::::::  ::  :. ::: .. ::::::::::
CCDS26 ARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEA
       290       300       310       320       330       340       

           330       340       350       360       370        380  
pF1KB3 FAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERMG-RSRGVAAL
       ::. .:  :..: : :::::  :::.::::::: .: : ..:::. :.: : :. ::...
CCDS26 FASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRGKRAYGVVSM
       350       360       370       380       390       400       

            390         
pF1KB3 CIGGGMGIAMCVQRE  
       ::: ::: :        
CCDS26 CIGTGMGAAAVFEYPGN
       410       420    

>>CCDS46794.1 ACAA1 gene_id:30|Hs108|chr3                 (331 aa)
 initn: 636 init1: 259 opt: 350  Z-score: 446.8  bits: 91.3 E(32554): 1.5e-18
Smith-Waterman score: 489; 33.5% identity (51.4% similar) in 397 aa overlap (3-391:33-323)

                                           10        20         30 
pF1KB3                             MNAGSDPVVIVSAARTIIGSFN-GALAAVPVQ
                                     :..  ::.: . :: :   . :..  .  .
CCDS46 RLQVVLGHLRGPADSGWMPQAAPCLSGAPQASAADVVVVHGRRTAICRAGRGGFKDTTPD
             10        20        30        40        50        60  

              40        50        60        70        80        90 
pF1KB3 DLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQNPVRQASVGAGIPYSVPAWSCQMI
       .: :.:.  ::: ... ::.....  :.::  : :   .: :.  . :: .::  . .  
CCDS46 ELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQ
             70        80        90       100       110       120  

             100       110       120       130       140       150 
pF1KB3 CGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGL
       :.:::.::           .::  :::..:                            : 
CCDS46 CSSGLQAV-----------ASI--AGGIRN----------------------------GS
            130                                                140 

             160       170       180       190       200           
pF1KB3 TDAFHNCHMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVS---
        :    :  :::.::::... .::: ::  :. ::...  ::. : :. ::::: ..   
CCDS46 YDIGMAC--GITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHD
               150       160       170       180       190         

         210       220       230       240       250       260     
pF1KB3 ---TRRGLIEVKTDEFPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMK
          :.:. : :  ::  : ....:...:::: :  ::.                      
CCDS46 DKGTKRS-ITVTQDEGIRPSTTMEGLAKLKPAFKKDGS----------------------
     200        210       220       230                            

         270       280       290       300       310       320     
pF1KB3 KSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFA
                                               : :: .. ::::::::::::
CCDS46 ----------------------------------------TTAGLTVSDVDIFEINEAFA
                                                240       250      

         330       340       350       360       370        380    
pF1KB3 AVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERMG-RSRGVAALCI
       . .:  :..: : :::::  :::.::::::: .: : ..:::. :.: : :. ::...::
CCDS46 SQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRGKRAYGVVSMCI
        260       270       280       290       300       310      

          390         
pF1KB3 GGGMGIAMCVQRE  
       : ::: :        
CCDS46 GTGMGAAAVFEYPGN
        320       330 




397 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:25:01 2016 done: Thu Nov  3 13:25:02 2016
 Total Scan time:  2.500 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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