Result of FASTA (ccds) for pF1KA1221
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1221, 1327 aa
  1>>>pF1KA1221 1327 - 1327 aa - 1327 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.4160+/-0.00177; mu= -6.6983+/- 0.102
 mean_var=444.6079+/-120.513, 0's: 0 Z-trim(105.4): 161  B-trim: 887 in 2/50
 Lambda= 0.060825
 statistics sampled from 8280 (8379) to 8280 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.257), width:  16
 Scan time:  4.830

The best scores are:                                      opt bits E(32554)
CCDS731.1 ZNF644 gene_id:84146|Hs108|chr1          (1327) 8826 791.4       0
CCDS732.1 ZNF644 gene_id:84146|Hs108|chr1          ( 105)  644 72.3 7.7e-13


>>CCDS731.1 ZNF644 gene_id:84146|Hs108|chr1               (1327 aa)
 initn: 8826 init1: 8826 opt: 8826  Z-score: 4210.6  bits: 791.4 E(32554):    0
Smith-Waterman score: 8826; 100.0% identity (100.0% similar) in 1327 aa overlap (1-1327:1-1327)

               10        20        30        40        50        60
pF1KA1 MRSFLQQDVNKTKSRLNVLNGLANNMDDLKINTDITGAKEELLDDNNFISDKESGVHKPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MRSFLQQDVNKTKSRLNVLNGLANNMDDLKINTDITGAKEELLDDNNFISDKESGVHKPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 DCQTSFQKNNTLTLPEELSKDKSENALSGGQSSLFIHAGAPTVSSENFILPKGAAVNGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DCQTSFQKNNTLTLPEELSKDKSENALSGGQSSLFIHAGAPTVSSENFILPKGAAVNGPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 SHSSLTKTSNMNKGSVSLTTGQPVDQPTTESCSTLKVAADLQLSTPQKASQHQVLFLLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SHSSLTKTSNMNKGSVSLTTGQPVDQPTTESCSTLKVAADLQLSTPQKASQHQVLFLLSD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 VAHAKNPTHSNKKLPTSASVGCDIQNSVGSNIKSDGTLINQVEVGEDGEDLLVKDDCVNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VAHAKNPTHSNKKLPTSASVGCDIQNSVGSNIKSDGTLINQVEVGEDGEDLLVKDDCVNT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 VTGISSGTDGFRSENDTNWDPQKEFIQFLMTNEETVDKAPPHSKIGLEKKRKRKMDVSKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VTGISSGTDGFRSENDTNWDPQKEFIQFLMTNEETVDKAPPHSKIGLEKKRKRKMDVSKI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 TRYTEDCFSDSNCVPNKSKMQEVDFLEQNEELQAVDSQKYALSKVKPESTDEDLESVDAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TRYTEDCFSDSNCVPNKSKMQEVDFLEQNEELQAVDSQKYALSKVKPESTDEDLESVDAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 QHLIYNPDKCGEESSPVHTSTFLSNTLKKKCEESDSESPATFSTEEPSFYPCTKCNVNFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QHLIYNPDKCGEESSPVHTSTFLSNTLKKKCEESDSESPATFSTEEPSFYPCTKCNVNFR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 EKKHLHRHMMYHLDGNSHFRHLNVPRPYACRECGRTFRDRNSLLKHMIIHQERRQKLMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EKKHLHRHMMYHLDGNSHFRHLNVPRPYACRECGRTFRDRNSLLKHMIIHQERRQKLMEE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 IRELKELQDEGRSARLQCPQCVFGTNCPKTFVQHAKTHEKDKRYYCCEECNFMAVTENEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IRELKELQDEGRSARLQCPQCVFGTNCPKTFVQHAKTHEKDKRYYCCEECNFMAVTENEL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 ECHRGIAHGAVVKCPMVTSDIAQRKTQKKTFMKDSVVGSSKKSATYICKMCPFTTSAKSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ECHRGIAHGAVVKCPMVTSDIAQRKTQKKTFMKDSVVGSSKKSATYICKMCPFTTSAKSV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 LKKHTEYLHSSSCVDSFGSPLGLDKRKNDILEEPVDSDSTKTLTKQQSTTFPKNSALKQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LKKHTEYLHSSSCVDSFGSPLGLDKRKNDILEEPVDSDSTKTLTKQQSTTFPKNSALKQD
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 VKRTFGSTSQSSSFSKIHKRPHRIQKARKSIAQSGVNMCNQNSSPHKNVTIKSSVDQKPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VKRTFGSTSQSSSFSKIHKRPHRIQKARKSIAQSGVNMCNQNSSPHKNVTIKSSVDQKPK
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 YFHQAAKEKSNAKANSHYLYRHKYENYRMIKKSGESYPVHFKKEEASSLNSLHLFSSSSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YFHQAAKEKSNAKANSHYLYRHKYENYRMIKKSGESYPVHFKKEEASSLNSLHLFSSSSN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 SHNNFISDPHKPDAKRPESFKDHRRVAVKRVIKESKKESSVGGEDLDSYPDFLHKMTVVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SHNNFISDPHKPDAKRPESFKDHRRVAVKRVIKESKKESSVGGEDLDSYPDFLHKMTVVV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 LQKLNSAEKKDSYETEDESSWDNVELGDYTTQAIEDETYSDINQEHVNLFPLFKSKVEGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LQKLNSAEKKDSYETEDESSWDNVELGDYTTQAIEDETYSDINQEHVNLFPLFKSKVEGQ
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 EPGENATLSYDQNDGFYFEYYEDTGSNNFLHEIHDPQHLETADASLSKHSSVFHWTDLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EPGENATLSYDQNDGFYFEYYEDTGSNNFLHEIHDPQHLETADASLSKHSSVFHWTDLSL
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA1 EKKSCPYCPATFETGVGLSNHVRGHLHRAGLSYEARHVVSPEQIATSDKMQHFKRTGTGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EKKSCPYCPATFETGVGLSNHVRGHLHRAGLSYEARHVVSPEQIATSDKMQHFKRTGTGT
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA1 PVKRVRKAIEKSETTSEHTCQLCGGWFDTKIGLSNHVRGHLKRLGKTKWDAHKSPICVLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PVKRVRKAIEKSETTSEHTCQLCGGWFDTKIGLSNHVRGHLKRLGKTKWDAHKSPICVLN
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA1 EMMQNEEKYEKILKALNSRRIIPRPFVAQKLASSDDFISQNVIPLEAYRNGLKTEALSVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EMMQNEEKYEKILKALNSRRIIPRPFVAQKLASSDDFISQNVIPLEAYRNGLKTEALSVS
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA1 ASEEEGLNFLNEYDETKPELPSGKKNQSLTLIELLKNKRMGEERNSAISPQKIHNQTARK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ASEEEGLNFLNEYDETKPELPSGKKNQSLTLIELLKNKRMGEERNSAISPQKIHNQTARK
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA1 RFVQKCVLPLNEDSPLMYQPQKMDLTMHSALDCKQKKSRSRSGSKKKMLTLPHGADEVYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RFVQKCVLPLNEDSPLMYQPQKMDLTMHSALDCKQKKSRSRSGSKKKMLTLPHGADEVYI
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA1 LRCRFCGLVFRGPLSVQEDWIKHLQRHIVNANLPRTGAGMVEVTSLLKKPASITETSFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LRCRFCGLVFRGPLSVQEDWIKHLQRHIVNANLPRTGAGMVEVTSLLKKPASITETSFSL
             1270      1280      1290      1300      1310      1320

              
pF1KA1 LMAEAAS
       :::::::
CCDS73 LMAEAAS
              

>>CCDS732.1 ZNF644 gene_id:84146|Hs108|chr1               (105 aa)
 initn: 642 init1: 642 opt: 644  Z-score: 344.0  bits: 72.3 E(32554): 7.7e-13
Smith-Waterman score: 644; 94.3% identity (97.1% similar) in 105 aa overlap (1223-1327:1-105)

           1200      1210      1220      1230      1240      1250  
pF1KA1 IHNQTARKRFVQKCVLPLNEDSPLMYQPQKMDLTMHSALDCKQKKSRSRSGSKKKMLTLP
                                     : . .. :::::::::::::::::::::::
CCDS73                               MLIRQNLALDCKQKKSRSRSGSKKKMLTLP
                                             10        20        30

           1260      1270      1280      1290      1300      1310  
pF1KA1 HGADEVYILRCRFCGLVFRGPLSVQEDWIKHLQRHIVNANLPRTGAGMVEVTSLLKKPAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HGADEVYILRCRFCGLVFRGPLSVQEDWIKHLQRHIVNANLPRTGAGMVEVTSLLKKPAS
               40        50        60        70        80        90

           1320       
pF1KA1 ITETSFSLLMAEAAS
       :::::::::::::::
CCDS73 ITETSFSLLMAEAAS
              100     




1327 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 10:50:51 2016 done: Thu Nov  3 10:50:52 2016
 Total Scan time:  4.830 Total Display time:  0.110

Function used was FASTA [36.3.4 Apr, 2011]
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