Result of FASTA (ccds) for pF1KA0714
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0714, 1766 aa
  1>>>pF1KA0714 1766 - 1766 aa - 1766 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1755+/-0.00131; mu= 19.6226+/- 0.079
 mean_var=81.0475+/-16.558, 0's: 0 Z-trim(100.8): 69  B-trim: 2 in 1/50
 Lambda= 0.142464
 statistics sampled from 6229 (6261) to 6229 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.535), E-opt: 0.2 (0.192), width:  16
 Scan time:  4.620

The best scores are:                                      opt bits E(32554)
CCDS33527.2 LTN1 gene_id:26046|Hs108|chr21         (1812) 11602 2395.8       0


>>CCDS33527.2 LTN1 gene_id:26046|Hs108|chr21              (1812 aa)
 initn: 11602 init1: 11602 opt: 11602  Z-score: 12876.9  bits: 2395.8 E(32554):    0
Smith-Waterman score: 11602; 99.9% identity (99.9% similar) in 1766 aa overlap (1-1766:47-1812)

                                             10        20        30
pF1KA0                               MGGKNKQRTKGNLRPSNSGRAAELLAKEQG
                                     ::::::::::::::::::::::::::::::
CCDS33 VSSSAARSRKLCPGRVNRGLSAQSTAATATMGGKNKQRTKGNLRPSNSGRAAELLAKEQG
         20        30        40        50        60        70      

               40        50        60        70        80        90
pF1KA0 TVPGFIGFGTSQSDLGYVPAIQGAEEIDSLVDSDFRMVLRKLSKKDVTTKLKAMQEFGTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TVPGFIGFGTSQSDLGYVPAIQGAEEIDSLVDSDFRMVLRKLSKKDVTTKLKAMQEFGTM
         80        90       100       110       120       130      

              100       110       120       130       140       150
pF1KA0 CTERDTETVKGVLPYWPRIFCKISLDHDRRVREATQQAFEKLILKVKKQLAPYLKSLMGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CTERDTETVKGVLPYWPRIFCKISLDHDRRVREATQQAFEKLILKVKKQLAPYLKSLMGY
        140       150       160       170       180       190      

              160       170       180       190       200       210
pF1KA0 WLMAQCDTYTPAAFAAKDAFEAAFPPSKQPEAIAFCKDEITSVLQDHLIKETPDTLSDPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WLMAQCDTYTPAAFAAKDAFEAAFPPSKQPEAIAFCKDEITSVLQDHLIKETPDTLSDPQ
        200       210       220       230       240       250      

              220       230       240       250       260       270
pF1KA0 TVPEEEREAKFYRVVTCSLLALKRLLCLLPDNELDSLEEKFKSLLSQNKFWKYGKHSVPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TVPEEEREAKFYRVVTCSLLALKRLLCLLPDNELDSLEEKFKSLLSQNKFWKYGKHSVPQ
        260       270       280       290       300       310      

              280       290       300       310       320       330
pF1KA0 IRSAYFELVSALCQRIPQLMKEEASKVSPSVLLSIDDSDPIVCPALWEAVLYTLTTIEDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IRSAYFELVSALCQRIPQLMKEEASKVSPSVLLSIDDSDPIVCPALWEAVLYTLTTIEDC
        320       330       340       350       360       370      

              340       350       360       370       380       390
pF1KA0 WLHVNAKKSVFPKLSTVIREGGRGLATVIYPYLLPFISKLPQSITNPKLDFFKNFLTSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WLHVNAKKSVFPKLSTVIREGGRGLATVIYPYLLPFISKLPQSITNPKLDFFKNFLTSLV
        380       390       400       410       420       430      

              400       410       420       430       440       450
pF1KA0 AGLSTERTKTSSSESSAVISAFFECLRFIMQQNLGEEEIEQMLVNDQLIPFIDAVLKDPG
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AGLSTERTKTSSLESSAVISAFFECLRFIMQQNLGEEEIEQMLVNDQLIPFIDAVLKDPG
        440       450       460       470       480       490      

              460       470       480       490       500       510
pF1KA0 LQHGQLFNHLAETLSSWEAKADTEKDEKTAHNLENVLIHFWERLSEICVAKISEPEADVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LQHGQLFNHLAETLSSWEAKADTEKDEKTAHNLENVLIHFWERLSEICVAKISEPEADVE
        500       510       520       530       540       550      

              520       530       540       550       560       570
pF1KA0 SVLGVSNLLQVLQKPKSSLKSSKKKNGKVRFADEILESNKENEKCVSSEGEKIEGWELTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SVLGVSNLLQVLQKPKSSLKSSKKKNGKVRFADEILESNKENEKCVSSEGEKIEGWELTT
        560       570       580       590       600       610      

              580       590       600       610       620       630
pF1KA0 EPSLTHNSSGLLSPLRKKPLEDLVCKLADISINYVNERKSEQHLRFLSTLLDSFSSSRVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EPSLTHNSSGLLSPLRKKPLEDLVCKLADISINYVNERKSEQHLRFLSTLLDSFSSSRVF
        620       630       640       650       660       670      

              640       650       660       670       680       690
pF1KA0 KMLLGDEKQSIVQAKPLEIAKLVQKNPAVQFLYQKLIGWLNEDQRKDFGFLVDILYSALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KMLLGDEKQSIVQAKPLEIAKLVQKNPAVQFLYQKLIGWLNEDQRKDFGFLVDILYSALR
        680       690       700       710       720       730      

              700       710       720       730       740       750
pF1KA0 CCDNDMERKKVLDDLTKVDLKWNSLLKIIEKACPSSDKHALVTPWLKGDILGEKLVNLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CCDNDMERKKVLDDLTKVDLKWNSLLKIIEKACPSSDKHALVTPWLKGDILGEKLVNLAD
        740       750       760       770       780       790      

              760       770       780       790       800       810
pF1KA0 CLCNEDLESRVSSESHFSERWTLLSLVLSQHVKNDYLIGDVYVERIIVRLHETLFKTKKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CLCNEDLESRVSSESHFSERWTLLSLVLSQHVKNDYLIGDVYVERIIVRLHETLFKTKKL
        800       810       820       830       840       850      

              820       830       840       850       860       870
pF1KA0 SEAESSDSSVSFICDVAYNYFSSAKGCLLMPSSEDLLLTLFQLCAQSKEKTHLPDFLICK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SEAESSDSSVSFICDVAYNYFSSAKGCLLMPSSEDLLLTLFQLCAQSKEKTHLPDFLICK
        860       870       880       890       900       910      

              880       890       900       910       920       930
pF1KA0 LKNTWLSGVNLLVHQTDSSYKESTFLHLSALWLKNQVQASSLDINSLQVLLSAVDDLLNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LKNTWLSGVNLLVHQTDSSYKESTFLHLSALWLKNQVQASSLDINSLQVLLSAVDDLLNT
        920       930       940       950       960       970      

              940       950       960       970       980       990
pF1KA0 LLESEDSYLMGVYIGSVMPNDSEWEKMRQSLPMQWLHRPLLEGRLSLNYECFKTDFKEQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LLESEDSYLMGVYIGSVMPNDSEWEKMRQSLPMQWLHRPLLEGRLSLNYECFKTDFKEQD
        980       990      1000      1010      1020      1030      

             1000      1010      1020      1030      1040      1050
pF1KA0 IKTLPSHLCTSALLSKMVLIALRKETVLENNELEKIIAELLYSLQWCEELDNPPIFLIGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IKTLPSHLCTSALLSKMVLIALRKETVLENNELEKIIAELLYSLQWCEELDNPPIFLIGF
       1040      1050      1060      1070      1080      1090      

             1060      1070      1080      1090      1100      1110
pF1KA0 CEILQKMNITYDNLRVLGNTSGLLQLLFNRSREHGTLWSLIIAKLILSRSISSDEVKPHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CEILQKMNITYDNLRVLGNTSGLLQLLFNRSREHGTLWSLIIAKLILSRSISSDEVKPHY
       1100      1110      1120      1130      1140      1150      

             1120      1130      1140      1150      1160      1170
pF1KA0 KRKESFFPLTEGNLHTIQSLCPFLSKEEKKEFSAQCIPALLGWTKKDLCSTNGGFGHLAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KRKESFFPLTEGNLHTIQSLCPFLSKEEKKEFSAQCIPALLGWTKKDLCSTNGGFGHLAI
       1160      1170      1180      1190      1200      1210      

             1180      1190      1200      1210      1220      1230
pF1KA0 FNSCLQTKSIDDGELLHGILKIIISWKKEHEDIFLFSCNLSEASPEVLGVNIEIIRFLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FNSCLQTKSIDDGELLHGILKIIISWKKEHEDIFLFSCNLSEASPEVLGVNIEIIRFLSL
       1220      1230      1240      1250      1260      1270      

             1240      1250      1260      1270      1280      1290
pF1KA0 FLKYCSSPLAESEWDFIMCSMLAWLETTSENQALYSIPLVQLFACVSCDLACDLSAFFDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FLKYCSSPLAESEWDFIMCSMLAWLETTSENQALYSIPLVQLFACVSCDLACDLSAFFDS
       1280      1290      1300      1310      1320      1330      

             1300      1310      1320      1330      1340      1350
pF1KA0 TTLDTIGNLPVNLISEWKEFFSQGIHSLLLPILVTVTGENKDVSETSFQNAMLKPMCETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TTLDTIGNLPVNLISEWKEFFSQGIHSLLLPILVTVTGENKDVSETSFQNAMLKPMCETL
       1340      1350      1360      1370      1380      1390      

             1360      1370      1380      1390      1400      1410
pF1KA0 TYISKEQLLSHKLPARLVADQKTNLPEYLQTLLNTLAPLLLFRARPVQIAVYHMLYKLMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TYISKEQLLSHKLPARLVADQKTNLPEYLQTLLNTLAPLLLFRARPVQIAVYHMLYKLMP
       1400      1410      1420      1430      1440      1450      

             1420      1430      1440      1450      1460      1470
pF1KA0 ELPQYDQDNLKSYGDEEEEPALSPPAALMSLLSIQEDLLENVLGCIPVGQIVTIKPLSED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELPQYDQDNLKSYGDEEEEPALSPPAALMSLLSIQEDLLENVLGCIPVGQIVTIKPLSED
       1460      1470      1480      1490      1500      1510      

             1480      1490      1500      1510      1520      1530
pF1KA0 FCYVLGYLLTWKLILTFFKAASSQLRALYSMYLRKTKSLNKLLYHLFRLMPENPTYAETA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FCYVLGYLLTWKLILTFFKAASSQLRALYSMYLRKTKSLNKLLYHLFRLMPENPTYAETA
       1520      1530      1540      1550      1560      1570      

             1540      1550      1560      1570      1580      1590
pF1KA0 VEVPNKDPKTFFTEELQLSIRETTMLPYHIPHLACSVYHMTLKDLPAMVRLWWNSSEKRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VEVPNKDPKTFFTEELQLSIRETTMLPYHIPHLACSVYHMTLKDLPAMVRLWWNSSEKRV
       1580      1590      1600      1610      1620      1630      

             1600      1610      1620      1630      1640      1650
pF1KA0 FNIVDRFTSKYVSSVLSFQEISSVQTSTQLFNGMTVKARATTREVMATYTIEDIVIELII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FNIVDRFTSKYVSSVLSFQEISSVQTSTQLFNGMTVKARATTREVMATYTIEDIVIELII
       1640      1650      1660      1670      1680      1690      

             1660      1670      1680      1690      1700      1710
pF1KA0 QLPSNYPLGSIIVESGKRVGVAVQQWRNWMLQLSTYLTHQNGSIMEGLALWKNNVDKRFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QLPSNYPLGSIIVESGKRVGVAVQQWRNWMLQLSTYLTHQNGSIMEGLALWKNNVDKRFE
       1700      1710      1720      1730      1740      1750      

             1720      1730      1740      1750      1760      
pF1KA0 GVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETFF
       1760      1770      1780      1790      1800      1810  




1766 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 10:04:43 2016 done: Thu Nov  3 10:04:44 2016
 Total Scan time:  4.620 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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