GENSCAN 1.0	Date run:  3-Nov-116	Time: 09:36:38

Sequence gi568815578r:37883459_38113816 : 230358 bp : 45.88% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  19893  20013  121  2  1   96  113   250 0.999  26.65
 1.02 Intr +  24661  24842  182  2  2    8   72   166 0.730   6.59
 1.03 Intr +  31202  31317  116  1  2   52   77    73 0.844   1.85
 1.04 Intr +  39371  39425   55  2  1   54   68    62 0.010  -0.22
 1.05 Intr +  41195  41357  163  1  1   24   64    52 0.000  -4.05
 1.06 Intr +  48177  48346  170  1  2   97   95   211 0.742  22.37
 1.07 Intr +  53301  53366   66  2  0  107   73     9 0.164   0.40
 1.08 Term +  60523  60795  273  0  0  103   38   542 0.986  46.17
 1.09 PlyA +  61872  61877    6                               1.05

 2.00 Prom +  75327  75366   40                              -2.86
 2.01 Init +  87640  87659   20  0  2  113   61    19 0.754   1.23
 2.02 Intr +  88630  88676   47  1  2  122   95    14 0.575   3.55
 2.03 Intr +  89080  89208  129  2  0   61   84    27 0.375   0.27
 2.04 Intr +  93959  94068  110  0  2   53   94    64 0.615   3.50
 2.05 Term +  95459  95578  120  1  0   39   40   102 0.472  -1.03
 2.06 PlyA +  98571  98576    6                               1.05

 3.09 PlyA -  98690  98685    6                               1.05
 3.08 Term - 100181  99998  184  1  1  126   46   271 0.973  23.72
 3.07 Intr - 113004 112917   88  1  1  128   94    69 0.811  10.53
 3.06 Intr - 113495 113291  205  2  1   54   80   160 0.980  10.57
 3.05 Intr - 115870 115730  141  1  0  109   79    32 0.915   4.95
 3.04 Intr - 117061 116947  115  0  1   17   70   120 0.781   3.55
 3.03 Intr - 119318 119123  196  0  1   69   70   151 0.582   9.87
 3.02 Intr - 122939 122739  201  0  0   53   88   150 0.878  10.76
 3.01 Init - 130358 128057 2302  2  1   77   56   970 0.967  80.24
 3.00 Prom - 134604 134565   40                              -5.36

 4.00 Prom + 137744 137783   40                              -4.16
 4.01 Init + 150490 150640  151  0  1  102   92   283 0.536  30.30
 4.02 Intr + 156977 157106  130  0  1  105   91    29 0.979   4.65
 4.03 Intr + 164890 165023  134  1  2   64   70   131 0.876   9.19
 4.04 Intr + 174074 174186  113  0  2   92   74   114 0.984  10.50
 4.05 Intr + 175936 176062  127  0  1   81   94    79 0.918   8.05
 4.06 Intr + 182623 182798  176  2  2   53  105   230 0.988  20.86
 4.07 Intr + 195872 195903   32  1  2   99   91     8 0.476  -0.87
 4.08 Intr + 200360 200474  115  2  1   58   82   100 0.621   6.85
 4.09 Intr + 204849 204962  114  2  0  123   66    75 0.955   9.44
 4.10 Term + 206268 206417  150  2  0  112   45   102 0.996   6.21
 4.11 PlyA + 208883 208888    6                               1.05

 5.00 Prom + 223967 224006   40                              -2.46
 5.01 Init + 229522 229563   42  0  0   79   72    76 0.072   5.59

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  42107  42036   72  0  0   76   97   106 0.951   9.68
S.002 Init +  47338  47560  223  0  1   69    1   134 0.838   1.52
S.003 Intr - 102016 101972   45  1  0   88  107    55 0.871   6.01


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:37883459_38113816|GENSCAN_predicted_peptide_1|381_aa
MGAPLAVALGALHYLALFLQLGGATRPAGHAPWDNHVSGHAVFPKSFTPIGFDTLPISSS
CSLFPKQEKPQAASRTQGIWLLAMVTARMVGKVACGKQVGRRSQKHMTCQSRIARPAAGI
GLPFNTPTLQRGKLRLREAWSHGSTRGNEHREELEDRWRLSVHHHNQQQQQQHQNTHQSV
YFPVSGAGAVSSLRVRRGRKTLLLIELPAFSGALFTETPHDMTARTGEDVEMACSFRGSG
SPSYSLEIQWWYVRSHRDWTDKQAWASNQLAVVEGIYENALETVKCHGLGYVVKVVGSNI
SHKLRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSVLHLPEAPPAAPAP
PPPKPGKELRKRSVDQEACSL

>gi568815578r:37883459_38113816|GENSCAN_predicted_CDS_1|1146_bp
atgggggccccgctcgccgtagcgctgggcgccctccactacctggcacttttcctgcaa
ctcggcggcgccacgcggcccgccggccacgcgccctgggacaaccacgtctccggccac
gcggttttccccaagtccttcacaccaattggttttgacaccttgcccatcagcagctcc
tgcagccttttccccaaacaagagaagccgcaggcggccagcaggacgcagggaatttgg
ctccttgccatggtgacagcaaggatggtgggcaaagtcgcctgcggcaaacaagtgggc
aggagaagccagaagcacatgacctgtcagagccgcatcgcacggcccgcagcaggcatc
gggctcccattcaacacgcccaccttgcagaggggaaaactgaggcttagagaggcgtgg
agccatgggagcaccagaggaaatgagcacagagaagagctagaggaccggtggagatta
tcagtacatcatcataatcagcagcagcagcagcagcatcaaaatacacatcaatctgtg
tattttccagtttctggtgctggtgcagtatcctcactcagagttaggagagggaggaag
accctgttgctgattgagctgcctgctttcagtggggccctgttcacagagacaccccat
gacatgacagcacggacgggcgaggacgtggagatggcctgctccttccgcggcagcggc
tccccctcctactcgctggagatccagtggtggtatgtacggagccaccgggactggacc
gacaagcaggcgtgggcctcgaaccagttagctgttgttgaaggcatatatgaaaacgct
ttggaaactgtaaagtgccatggattaggctatgtggtcaaggtggtgggcagcaacatc
tcccacaagctgcgcctgtcccgggtgaagcccacggacgaaggcacctacgagtgccgc
gtcatcgacttcagcgacggcaaggcccggcaccacaaggtcaaggcctacctgcgggtg
cagccaggggagaactccgtcctgcatctgcccgaagcccctcccgccgcgcccgccccg
ccgccccccaagccaggcaaggagctgaggaagcgctcggtggaccaggaggcctgcagc
ctctag

>gi568815578r:37883459_38113816|GENSCAN_predicted_peptide_2|141_aa
MVYRYTQARSGPPVAHCPSSLAYFPEISKAGAHKLEIPWVRTLVFAASGTLGTRPFSSGW
EWPGKESTITQNYFLKFGLYSLLWRKGSTGTWLPIKPDAQDWSKTLFQQQQQQQQQQQQQ
QQDCKKKKVKEDATETFMYGL

>gi568815578r:37883459_38113816|GENSCAN_predicted_CDS_2|426_bp
atggtctacagatacactcaggcaagatcaggtcctcctgttgcacattgtcccagctcc
ctggcctactttccagaaatcagcaaagcaggtgctcacaagctggaaataccctgggtt
aggaccctagtgtttgctgccagtgggaccttaggaaccaggcccttcagctctggctgg
gagtggcctggcaaggagtccaccatcactcagaattattttctgaaatttggcctctat
tccttactctggaggaaaggcagtacgggcacctggcttccaatcaagcccgacgcacag
gactggagtaagaccctgtttcaacaacaacagcaacaacaacaacaacaacaacaacaa
caacaagattgtaagaaaaaaaaagtcaaagaagatgccacagagacctttatgtatggc
ctgtaa

>gi568815578r:37883459_38113816|GENSCAN_predicted_peptide_3|1143_aa
MAVFDTPEEAFGVLRPVCVQLTKTQTVENVEHLQTRLQAVSDSALQELQQYILFPLRFTL
KTPGPKRERLIQSVVECLTFVLSSTCVKEQELLQELFSELSACLYSPSSQKPAAVSEELK
LAVIQGLSTLMHSAYGDIILTFYEPSILPRLGFAVSLLLGLAEQEKSKQIKIAALKCLQV
LLLQCDCQDHPRSLDELEQKQLGDLFASFLPGISTALTRLITGDFKQGHSIVVSSLKIFY
KTVSFIMADEQLKRISKVQAKPAVEHRVAELMVYREADWVKKTGDKLTILIKKIIECVSV
HPHWKVRLELVELVEDLLLKCSQSLVECAGPLLKALVGLVNDESPEIQAQCNKVLRHFAD
QKVVVGNKALADILSESLHSLATSLPRLMNSQDDQGKFSTLSLLLGYLKLLGPKINFVLN
SVAHLQRLSKALIQVLELDVADIKIVEERRWNSDDLNASPKTSATQPWNRIQRRYFRFFT
DERIFMLLRQVCQLLGYYGNLYLLVDHFMELYHQSVVYRKQAAMILNELVTGAAGLEVED
LHEKHIKTNPEELREIVTSILEEYTSQENWYLVTCLETEEMGEELMMEHPGLQAITSGEH
TCQVTSFLAFSKPSPTICSMNSNIWQICIQLEGIGQFAYALGKDFCLLLMSALYPVLEKA
GDQTLLISQVATSTMMDVCRACGYDSLQHLINQNSDYLVNGISLNLRHLALHPHTPKVLE
VMLRNSDANLLPLVADVVQDVLATLDQFYDKRAASFVSVLHALMAALAQWFPDTGNLGHL
QEQSLGEEGSHLNQRPAALEKSTTTAEDIEQFLLNYLKEKDVADGNVSDFDNEEEEQSVP
PKVDENDTRPDVEPPLPLQIQIAMDVMERCIHLLSDKNLQIRLKVSAQLLLCIPRVAGLR
LGVHVGGKPALAAHAGGKPALAVVLTAACDTDAGSLFSVLDVLDLCVVVLQSHKNQLLPL
AHQAWPSLVHRLTRDAPLAVLRAFKVLRTLGSKCGDFLRSRFCKDVLPKLAGSLVTQAPI
SARAGPVYSHTLAFKLQLAVLQGLGPLCERLDLGEGDLNKVADACLIYLSVKQPVKLQEA
ARSVFLHLMKVDPDSTWFLLNELYCPVQFTPPHPSLHPVQLHGASGQQNPYTTNVLQLLK
ELQ

>gi568815578r:37883459_38113816|GENSCAN_predicted_CDS_3|3432_bp
atggcagtttttgatactcctgaggaggcctttggtgtcttacgtccagtctgtgttcag
ctcacaaagacccagacagtggagaatgtggagcatctgcagacacgactacaagctgtg
agtgacagtgcccttcaggaacttcagcagtacatcctcttccctctgcgatttaccctg
aagaccccaggtcccaaaagagagcgtttgatccaaagtgtggtggaatgcctcacattt
gtcctttcttcaacatgtgtgaaagaacaggagcttctccaggaactcttttcagaactc
tctgcttgtctgtattcacccagctcccaaaaacctgcggctgtgtccgaggagttgaaa
ttggctgtgatccagggacttagcacattaatgcactcagcttatggggacatcattctg
actttttatgagccctccattctgccacgtttaggatttgctgtatctttactgttaggc
cttgcagaacaggagaaatcaaagcaaattaaaattgctgccttaaaatgtttacaggtt
ctactcttgcagtgtgattgtcaggaccatccaaggtcattggatgaacttgaacaaaag
cagctgggggatttgtttgcctcttttttacctggaatctcaactgcactgaccaggctt
atcacaggagactttaaacaaggtcacagcattgtcgtatcttccctaaagatcttttac
aagacagtgagcttcattatggctgatgaacagctcaaaagaatctcaaaggtccaagca
aaacctgcagttgagcacagagtagcagagctgatggtttacagggaagcagattgggta
aaaaagactggcgacaagttgactatccttattaaaaagataattgagtgtgtttctgtt
cacccacactggaaggtgagactggaactggtagaacttgtggaggaccttcttttgaag
tgcagtcaatcattggtcgaatgtgctggtccccttctgaaggccttagtgggactagta
aatgatgagagtcctgaaatccaagcccagtgcaataaagttctgagacattttgcagat
caaaaagtagtggtgggcaacaaagccctcgctgacatcttgtcagaaagcctgcattcc
cttgccacatctcttcctcgcctaatgaactcccaagatgaccagggcaaattctctact
ctttccttgttacttggttatctgaaactcttgggcccaaaaataaactttgtcctcaac
tctgtggcccatctccagcggctttccaaagcactcatccaagttctagagctagacgtg
gctgacatcaagattgttgaggaacggcgttggaactctgatgatctgaatgcttctcca
aagacctcagccacacagccttggaaccgcatccagaggagatatttccgcttcttcact
gatgagagaatcttcatgctcttgaggcaggtttgtcagctacttggttattatgggaat
ctttatttgcttgtggatcactttatggaactttaccatcaatctgtggtttaccggaag
caagctgccatgatccttaatgaactggttacaggggctgctgggctggaggttgaggat
cttcacgaaaaacatattaaaacaaacccagaagaactgagagagattgtgacatctata
cttgaagaatacacaagtcaagaaaattggtatttggttacctgtcttgaaactgaggaa
atgggagaggagctgatgatggagcacccaggcctccaagccatcacgtctggtgaacac
acctgccaagttacatcttttctagccttctcaaagccaagtcccactatttgctccatg
aacagtaacatctggcaaatatgcattcagttggaaggaattggccagtttgcatatgca
ctaggaaaagacttctgtttgctcttgatgtcagccctttatccagtactggagaaggct
ggagaccaaaccctactcattagtcaggtggctaccagcaccatgatggacgtttgccgt
gcttgtggctacgactccctgcagcacctgatcaatcaaaattcagactatttagtgaat
gggatctctttaaatctgcgtcatctggctctgcatcctcataccccaaaggtcctggaa
gtcatgctgcggaactcagatgctaacctgcttcctttggtggcagatgtggttcaagat
gtcttggccaccctggaccaattttacgataagagagctgcttcctttgtcagcgttctg
catgctctgatggcagcattagcccagtggttcccagacacaggtaatcttgggcacctc
caagagcaaagtttaggagaagagggaagtcatttgaaccaaagaccagcagctcttgag
aagagcaccaccacagctgaagacatcgaacagtttttgctgaactacctcaaagagaag
gatgtggcagatggaaatgtctcggattttgataatgaagaagaggaacagtcagtccct
cccaaagtggatgagaatgacacccgtccagatgtggagccaccactgccattgcagatc
caaatagccatggacgtgatggaacgctgcatccacttgttgtcagataaaaatctgcaa
atccgcctgaaggtcagtgcgcagctgcttctctgcattcccagagtagcaggactaagg
ttgggcgtccatgtgggagggaagcctgcgctggccgcccacgcgggagggaagcctgcg
ctggccgtcgtactgaccgctgcctgtgacactgatgcaggcagtctcttttcagtcttg
gatgtgctggatctgtgtgtggttgttcttcagtcccacaaaaaccagctgcttcccttg
gctcatcaggcctggccctcgctcgttcaccgactcacacgggacgcccccctggcagtg
cttagagccttcaaggttttacgtaccctgggaagcaagtgtggtgactttcttcgcagc
cggttctgcaaagatgtcctgccaaagctggctggctccctagtcacccaggcccccatc
agtgccagggctggaccagtttactcgcacacgctggccttcaagttgcagctggctgtc
ttacagggcctgggccccctctgtgagagactggacctaggtgagggtgacctgaataaa
gtggctgatgcctgcttgatttacctcagtgtcaaacagcccgtgaaattacaagaggct
gccaggagcgtcttcctccacttgatgaaggtggacccagactccacctggttcctcctg
aacgagctttactgccccgtgcagttcacacctccccaccccagcctccaccctgtgcag
ctgcacggggccagcgggcagcagaacccctacacgaccaacgtgctccagctgctcaag
gagctgcagtga

>gi568815578r:37883459_38113816|GENSCAN_predicted_peptide_4|413_aa
MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL
YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGE
FIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEEL
IKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEY
NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEVFGVQIILSSSVLLSSSRRAVTP
QNVSFRNVTAATRSYGSVELAGGEVQVCIRDLVSRNLELEKKCYGPVPSLSDMEEGNTST
VTQQEYKQKLARVTQVRKELKSHIQSLPDLSLLPNVTGGLAPLPSAGDLFSTD

>gi568815578r:37883459_38113816|GENSCAN_predicted_CDS_4|1242_bp
atgtcctccttctctgagtcggcgctggagaagaagctctcggagctgagcaactctcag
cagagcgtgcagaccctgtccctttggctcatccaccaccgcaagcacgcgggacccatc
gtctccgtgtggcaccgcgagctccgcaaagccaaatcaaatagaaagcttacttttctg
tatttagcgaatgatgtcatccaaaacagtaaaaggaaaggacctgaattcactagagaa
tttgaatctgtccttgtggatgctttttctcatgttgccagagaggcagatgaaggctgt
aaaaaacctttagaaagattgctgaacatctggcaagaacgaagtgtgtatggcggcgag
ttcatacagcagctgaagctgtctatggaggactccaagagccctccccccaaagcaaca
gaagagaagaaatctctgaaacgaacttttcagcaaattcaggaggaggaggatgacgac
taccctggcagctactctcctcaggatccttctgcaggacccctcttgactgaggaacta
atcaaagctttgcaggatctggaaaatgccgcatcaggggatgctactgtccgacagaaa
attgcttctctgccccaggaagtgcaagatgtttctctattggaaaaaataacagacaaa
gaggcagctgaacgtctttcaaaaacagtagatgaagcatgtctgttactagcagaatat
aacgggcgcctggcagcagaactggaggaccgtcgccagctggctcggatgttggtggag
tatacccagaatcagaaagatgttttgtcggagaaggagaaaaaactagaggtatttggc
gtacagataattttgtcatccagtgtcttactcagcagctcccgccgtgctgtgacaccc
cagaatgtgtcatttcgaaacgtcacagctgccactaggtcatatgggagcgtggagctg
gctgggggagaggtgcaggtgtgcatcagggatctggtatcaaggaatttagaacttgaa
aagaagtgttatggtccagttccctcactttcagatatggaagaagggaacacatccacg
gtcacacagcaggaatacaaacagaagcttgcacgagtaacccaggtccgcaaggaactg
aaatcccatattcagagcttgccagacctctcactgctgcccaacgtcacagggggctta
gcccccctgccctctgctggggacctgttttcaactgactag

>gi568815578r:37883459_38113816|GENSCAN_predicted_peptide_5|14_aa
MPISAMLQEETEAQ

>gi568815578r:37883459_38113816|GENSCAN_predicted_CDS_5|42_bp
atgcccatcagcgccatgctgcaggaggaaaccgaggcccag