GENSCAN 1.0	Date run:  3-Nov-116	Time: 09:29:27

Sequence gi568815582r:27998542_28281032 : 282491 bp : 47.18% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  19823  19898   76  1  1   83   81    40 0.917   4.05
 1.02 Intr +  21559  21707  149  2  2   78   -7   155 0.762   4.95
 1.03 Intr +  30445  30568  124  0  1   22  116    88 0.808   5.16
 1.04 Term +  34683  34789  107  1  2  128   41    52 0.931   3.07
 1.05 PlyA +  34961  34966    6                               1.05

 2.04 PlyA -  36477  36472    6                               1.05
 2.03 Term -  58452  58309  144  0  0   92   43   100 0.654   3.81
 2.02 Intr -  64062  64001   62  1  2   90  -14    84 0.507  -3.15
 2.01 Init -  64883  64535  349  2  1   92   97   776 0.998  74.25
 2.00 Prom -  69921  69882   40                              -1.86

 3.00 Prom +  70995  71034   40                             -10.05
 3.01 Init +  71502  71588   87  2  0   91   78    88 0.941   8.91
 3.02 Intr +  72371  72467   97  1  1   96   94     5 0.574   1.48
 3.03 Intr +  75055  75147   93  2  0   52  100    63 0.763   3.84
 3.04 Intr +  78573  78736  164  1  2   84   32    32 0.349  -3.11
 3.05 Intr +  78997  79117  121  0  1   50  100    96 0.762   7.07
 3.06 Intr +  82103  82189   87  0  0   78   87    64 0.651   5.24
 3.07 Term +  84563  84597   35  0  2  113   48    30 0.255  -0.75
 3.08 PlyA +  85281  85286    6                              -0.45

 4.27 PlyA -  85385  85380    6                               1.05
 4.26 Term -  92630  92509  122  0  2   98   53    99 0.645   6.04
 4.25 Intr -  92853  92697  157  0  1   71   34   135 0.896   5.98
 4.24 Intr - 100117  99752  366  1  0   71   79   139 0.184   6.64
 4.23 Intr - 103147 102917  231  1  0  114   76   417 0.986  41.07
 4.22 Intr - 103404 103306   99  0  0   67  115   115 0.982  12.41
 4.21 Intr - 106166 106005  162  2  0   82   97   201 0.981  20.57
 4.20 Intr - 107673 107502  172  2  1   95   75   236 0.999  22.95
 4.19 Intr - 107956 107842  115  2  1  113  115    44 0.999   9.11
 4.18 Intr - 109136 108981  156  0  0   80   91   165 0.989  15.98
 4.17 Intr - 113465 113276  190  2  1   74   98   164 0.963  15.16
 4.16 Intr - 114509 114363  147  2  0  142  100   131 0.999  20.13
 4.15 Intr - 118921 118777  145  0  1  129   19   126 0.999  10.08
 4.14 Intr - 123221 123129   93  1  0  102   75    80 0.899   7.18
 4.13 Intr - 127307 127148  160  0  1   91  102   319 0.995  32.65
 4.12 Intr - 131789 131671  119  1  2   85   45    76 0.670   3.11
 4.11 Intr - 133651 133611   41  1  2   71   83    25 0.523  -2.68
 4.10 Intr - 135392 135300   93  2  0   82   55    92 0.951   5.46
 4.09 Intr - 136783 136675  109  0  1   85   69   185 0.995  16.59
 4.08 Intr - 147662 147553  110  2  2   79   97    70 0.990   6.08
 4.07 Intr - 154244 154118  127  1  1   83  103    62 0.958   7.88
 4.06 Intr - 157230 157171   60  2  0  121   65    36 0.663   2.45
 4.05 Intr - 157986 157533  454  1  1   83   80   380 0.733  29.02
 4.04 Intr - 168044 167967   78  0  0  111   44    32 0.460   0.62
 4.03 Intr - 171368 171209  160  2  1   72   99   163 0.602  15.36
 4.02 Intr - 177554 177357  198  2  0   82  110    25 0.129   3.65
 4.01 Init - 193291 193214   78  1  0   46  103    40 0.011   2.36
 4.00 Prom - 200646 200607   40                              -1.96

 5.03 PlyA - 200654 200649    6                               1.05
 5.02 Term - 213469 213308  162  1  0   65   54    92 0.016   1.44
 5.01 Init - 232218 232192   27  0  0   80  101    26 0.042   2.70
 5.00 Prom - 236356 236317   40                              -3.66

 6.04 PlyA - 237167 237162    6                               1.05
 6.03 Term - 241342 241148  195  1  0   -4   47   343 0.663  18.41
 6.02 Intr - 241542 241375  168  0  0   23   36   278 0.296  16.24
 6.01 Init - 242010 241882  129  0  0   60   13   148 0.406   4.65
 6.00 Prom - 247745 247706   40                              -0.86

 7.00 Prom + 252687 252726   40                              -3.06
 7.01 Init + 259754 259857  104  1  2   46   20    91 0.162  -3.76
 7.02 Intr + 260563 260961  399  1  0   51   78   361 0.460  25.02
 7.03 Term + 279650 279701   52  2  1  117   50    22 0.008  -1.80
 7.04 PlyA + 280691 280696    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 194368 194504  137  0  2   82   93   108 0.970   8.49
S.002 Sngl - 221054 220887  168  2  0   83   43   156 0.802   3.40


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582r:27998542_28281032|GENSCAN_predicted_peptide_1|151_aa
MAAVAPDITSLPNHFQMQEIRGIQDETLMWRVIEVKDSMPVPKEIKIGPTVLLGIGDSVH
PVKQTCKMAMQGAVFGTRRPTSADEQILNLRKAPCLTRDQELYLRPVSEYLLHCGQGNSS
VTSLEKPSPTSLSEGDQLPIYNRQSRTVDRV

>gi568815582r:27998542_28281032|GENSCAN_predicted_CDS_1|456_bp
atggctgcggtagctccagacatcacatccttacccaaccacttccaaatgcaggaaata
aggggcattcaggatgagacattgatgtggcgagtgattgaagtcaaagactcaatgcct
gttcccaaagagatcaaaatcggccctactgtcttgctgggcattggcgactcagtccac
ccagtgaagcagacatgcaaaatggctatgcagggtgccgtctttggcaccaggcgaccc
acatcagctgatgaacagatcctcaacctacggaaagcaccttgcctaacacgggatcag
gagctgtatctgaggcctgtttctgagtaccttctccactgtggtcaaggtaactcaagt
gtcacctccttggagaagccttctccgacctcactatctgaaggagatcagctccccatc
tacaaccgccagagtagaacagtggatagagtgtga

>gi568815582r:27998542_28281032|GENSCAN_predicted_peptide_2|184_aa
MKTSRRGRALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGCGQGGRANCPNSGANAT
ANGTAAPAAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEELSGLDPQT
REPSTPIANPRRTSQTGELFHKTTPYKSLLKCPPVCEAFLDHPTEISRLAARRHSPAPLM
SPLL

>gi568815582r:27998542_28281032|GENSCAN_predicted_CDS_2|555_bp
atgaagactagccgccgcggccgagcgctcctggccgtggccctgaacctgctggcgctg
ctgttcgccaccaccgctttcctcaccacgcactggtgccagggcacgcagcgggtcccc
aagccgggctgcggccagggcgggcgcgccaactgccccaactcgggcgccaacgccacg
gccaacggcaccgccgcccccgccgccgccgccgccgccgccaccgcctcggggaacggc
ccccctggcggcgcgctctacagctgggagaccggcgacgaccgcttcctcttcaggaat
ttccacaccggcatctggtactcgtgcgaggaggagctcagcgggcttgatccacagacc
cgggagccttccacccccatcgccaacccacgccgaacctcccagacgggagaactcttc
cataagacaaccccgtacaagtctctgctcaaatgtcctccagtttgtgaggccttcctg
gaccaccccactgaaattagccgccttgctgcccgccggcactcccctgcacccctgatg
tccccactgctctga

>gi568815582r:27998542_28281032|GENSCAN_predicted_peptide_3|227_aa
MRIQRRLEQAHDAAFLEGGSGDPRSVGWEGPRVGPPVLIPWTSKSVPSTLIHPPPRHENC
PEDTVSSRKFGSRTVVVAQATKDTPKSRAITEVLTSSLCPLAPHGGPTRHKTAAWIPDLT
SSQHLISFSDGGEANGSWRLAVDRENESPHARLGLWGDNDDLTCGSGNWYQPLVRVPQFS
PQKPSPSMNEVTKSHHLEGSCEVTHTQFGISELCAVGHLSQDLGPNG

>gi568815582r:27998542_28281032|GENSCAN_predicted_CDS_3|684_bp
atgaggatccagcgacggctggagcaggcgcacgacgctgcgtttctggaaggcggctct
ggggacccgcggtcggttggatgggaggggccaagagtgggaccgccagtcttgatcccc
tggaccagtaagagcgtcccctccacactcatccatccaccaccaagacacgaaaactgc
ccagaagacactgtgagttctcgcaaatttgggtccaggactgtggttgtggcacaggcc
acaaaagatacacccaagtcccgggctatcacagaagtgttaacttcatccctttgtcct
ctggctccacatggaggtcccacgcggcacaaaacagccgcctggattcctgacctcaca
tcctcacagcacctcatctctttctcagatggtggagaagcaaacggttcctggcgtctc
gctgtggacagggagaatgagtctccccatgctcggctggggctgtggggtgacaatgat
gacctcacctgtggatctggcaactggtaccagccgctggtcagggtgcctcagttctcc
ccacagaagccctcgccctccatgaatgaggtcacaaagagccaccacctggaaggcagc
tgtgaggtcacccacacccagtttggcatctctgagctgtgtgctgttggacacttgtca
caggatttagggcccaatggatag

>gi568815582r:27998542_28281032|GENSCAN_predicted_peptide_4|1313_aa
MLDLQHAFIVVRQFHTHSLPDVIQCQNLINKMWLGVPSQDKMEIRSCLPKLLLAHHKTLP
YFIRNKLCKVIVDIGRQDWPMFYHDFFTNILQLIQSPVTTPLGLIMLKTTSEELACPRED
LSVARKEELRKLLLDQVQTVLGLLTGILETVWDKHSVTAATPPPSPTSGESGDLLSNLLQ
SPSSAKLLNQPIPILDVESEYICSLALECLAHLFSWIPLSASITPSLLTTIFHFARFGCD
IRARKMASVNGSSQNCVSGQERGRLGVLAMSCINELMSKNCVPMEFEEYLLRMFQQTFYL
LQKITKDNNAHTVKSRLEELDERSEVVQGLRLLLLRSQEQEKSYIEKFTDFLRLFVSVHL
RRIESYSQFPVVEFLTLLFKYTFHQPTHEGYFSCLDIWTLFLDYLTSKIKSRLGDKEAVL
NRYEDALVLLLTEVLNRIQFRYNQAQLEELDDETLDDDQQTEWQRYLRQSLEVVAKVMEL
LPTHAFSTLGTFLKAYDEKLWGSPAFSSWVSSGACVNGRQPRFLSTPGAVTVYDNGMHIL
ASRHRLNITAENDCRRLHCSLRDLSSLLQAVGRLAEYFIGDVFAARFNDALTVVERLVKV
TLYGSQIKLYNIETAVPSVLKPDLIDVHAQSLAALQAYSHWLAQYCSEVHRQNTQQFVTL
ISTTMDAITPLISTKVQDKLLLSACHLLVSLATTVRPVFLISIPAVQKVFNRITDASALR
LVDKAQVLVCRALSNILLLPWPNLPENEQQWPVRSINHASLISALSRDYRNLKPSAVAPQ
RKMPLDDTKLIIHQTLSVLEDIVENISGESTKSRQICYQSLQESVQVSLALFPAFIHQSD
VTDEMLSFFLTLFRGLRVQMGVPFTEQIIQTFLNMFTREQLAESILHEGSTGCRVVEKFL
KILQVVVQEPGQVFKPFLPSIIALCMEQVYPIIAERPSPDVKAELFELLFRTLHHNWRYF
FKSTVLASVQRGIAEEQMENEPQFSAIMQAFGQSFLQPDIHLFKQNLFYLETLNTKQKLY
HKKIFRTAMLFQFVNVLLQVLVHKSHDLLQEEIGIAIYNMASVDFDGFFAAFLPEFLTSC
DGVDANQKSVLGRNFKMDRLCPCLPGPALIHPECAQAGQRPALLQTLQRQPAPWHCEALG
LLLPGDTDFCCCHLRQPYLPPQMSPRWALVTLLGFSHRKQRCLPLPLLHILPLPSRAGFW
VHLSTGRCSQGVGAGGGVCGQDLGAWEFPELMSVTPKRHILMAEGDSIPVTVPIESQGDG
GPKHDSPGVTELEARGAVAALSILLPSERPAGGAVRLLAVLLVERQSLGLAAG

>gi568815582r:27998542_28281032|GENSCAN_predicted_CDS_4|3942_bp
atgttagatttgcagcatgcttttatagtggttcgtcagtttcatactcattcattacct
gatgtcatccaatgccagaatctgatcaataaaatgtggcttggggtcccatctcaggat
aagatggaaatccgtagctgtctgcccaaactccttttggctcaccataaaaccttacct
tactttatccggaacaagctctgcaaagttattgttgatattggacgtcaggattggccc
atgttctaccacgacttttttactaacattttacagttgatccagtcccctgtgacaacc
ccccttgggctgatcatgttgaagacaacttcagaagagctggcttgtccccgtgaggac
ctcagtgtggctcggaaggaggagttgcggaagctgctactggaccaggtgcagacagtg
cttgggctactgacaggtatcttggagactgtctgggacaaacacagtgttactgctgcc
actccaccaccatccccgacctcaggagaaagtggtgacttactgagtaacctgttgcag
agtcccagttcagccaaactgttgaatcagccaattcccatccttgatgtggagagtgag
tatatctgttccctggctttggagtgcctggcccatctcttcagttggattcctctgtct
gccagcatcaccccatccctccttaccaccatcttccactttgcacgatttggctgtgac
atccgggccagaaagatggcgtcagttaacggcagcagccagaactgtgtctcgggtcag
gagcgcggccggctgggggtcctggccatgtcctgcatcaatgaactcatgtccaagaac
tgtgtgcctatggaatttgaggagtatttactgcgtatgttccagcagactttctacctc
ctgcagaaaatcaccaaggataacaatgcccacacagtgaagagcaggctagaagagctc
gatgagaggtctgaggtggtgcagggactgagactgctgctcctgcgtagccaagaacag
gagaagagctatatcgagaagtttactgactttcttcggctctttgtgagtgttcaccta
agaagaatcgagtcttactcccagttccctgtggtggagtttttgacacttttgttcaag
tacacatttcatcagcctactcatgaaggttacttctcttgtttggatatctggacgctg
tttttggactatctgacaagtaaaattaaaagtcgtcttggagacaaggaagcagttctc
aacaggtacgaagatgccctggtgctcctgctcacagaggtgttgaatcgaatccagttc
agatacaaccaagcccagctggaggagttggatgatgagactctggatgacgatcagcag
acggagtggcagcggtacttacggcagagcttggaggtggtggccaaagtgatggagctc
ctgcccacgcacgccttctccacactgggaacgtttttaaaggcttatgatgaaaagctg
tgggggagcccagcctttagttcttgggtctcctctggagcctgtgtaaatgggcgccag
ccgcgattcttgtctactcctggtgctgtgaccgtgtatgacaatgggatgcacattttg
gccagcagacacaggttgaacatcacggcggagaacgactgccggcggctgcactgctcc
ctgagagacttgagctccctgctgcaggccgtgggccgcctggccgagtactttatcggg
gatgtgtttgctgcacggttcaatgatgccctcacagtcgtggaaaggttggtcaaagtc
actctgtacggatctcagataaaattgtacaacattgaaactgctgtgccatcagtattg
aaacctgacctcattgatgtgcatgctcagtccctggctgcgctgcaggcttactctcac
tggttagcacagtattgcagtgaagttcaccggcagaacacgcagcagttcgtgacactc
atctctactaccatggatgcaatcacacctctaatcagcaccaaggtccaagacaagctg
ctgctatctgcgtgccacttactggtctcactggccaccaccgtgcggcccgtctttctg
atcagcatccctgcagtgcagaaagtattcaacagaatcactgatgcctctgccctgcga
cttgtcgataaggcccaggtgttggtgtgccgagccctctctaacatcttgctgcttccg
tggccaaaccttccagagaatgagcagcagtggcccgtgcgctccatcaaccacgccagc
ctcatctctgcactctcccgggactatcgcaacctgaagcccagtgctgttgccccacag
agaaagatgccactggatgacaccaaactgattatccaccagacactcagcgtcttagaa
gatattgtggagaatatctcgggggagtccaccaagtctcgacagatttgctaccagtcg
ctgcaggaatctgttcaggtctccctggccctctttccagcttttatccatcagtcagat
gtgactgatgagatgctgagcttcttcctcactctgtttcgaggccttagagtacagatg
ggtgtgcctttcactgagcaaatcatacagactttcctcaacatgtttaccagagagcag
ttagccgagagcatcctccacgagggcagcacaggctgccgggtggtggagaagtttctg
aagatcctgcaggtggtggtccaggagccaggccaggtgttcaagcccttcctccccagc
atcatcgccctgtgcatggagcaagtgtatcccatcattgccgagcgtccctcccctgat
gtgaaggccgagctgtttgagctccttttccggacgctccatcacaactggaggtacttc
ttcaagtccaccgtgctggccagtgtccagagggggatcgctgaggagcagatggagaat
gagccccagttcagtgccatcatgcaggctttcggacagtcctttctccagcccgacatc
cacctttttaaacaaaatctcttctacttggagactctcaacaccaagcagaagctgtac
cacaagaagatcttccggactgccatgctgttccagtttgtgaacgtgctgctccaggtc
ctggtccacaagtcccatgatcttctgcaggaggagattggcatcgccatctacaacatg
gcctcagtcgactttgatggcttctttgccgccttcctcccagagttcctgaccagctgt
gatggtgtggatgccaaccagaaaagtgtgctggggcggaatttcaagatggatcggcta
tgcccctgccttccaggacctgccctcattcacccagaatgtgcacaggctggtcaacga
cctgcgctactacagactctgcaacgacagcctgccccctggcactgtgaagctctaggc
ctgctactgcctggggacacggacttctgctgctgccacctgcgccagccctaccttcca
ccacagatgtctcccagatgggccttggtcacactccttggcttctcccaccgcaagcaa
cgctgcctgcctctgccgctcctccacatcttgccgctgcccagcagagctggcttctgg
gtccacctgagcactggacggtgctcccagggcgttggagcaggcggaggggtgtgtggc
caggatttaggggcctgggaattccctgagctcatgtcagttactcctaaacggcacatt
ctgatggcggaaggagacagcatcccggtcactgttcccattgagtcacaaggagatgga
ggcccaaagcatgactcacctggggtcacagagctggaagccaggggcgccgtggctgct
ctgtccattttactgcctagtgaaaggcctgcggggggcgctgtcaggctccttgcggtg
ctgctggtggagcgccagagcctgggcctggctgcgggctga

>gi568815582r:27998542_28281032|GENSCAN_predicted_peptide_5|62_aa
MGLQTENKMRRSPAAALWGRPALATSGALGLLVGGGRAVLAGGSRAGARKDALGGGGSGR
VG

>gi568815582r:27998542_28281032|GENSCAN_predicted_CDS_5|189_bp
atggggctacagactgaaaataagatgcgccgcagcccggcggccgcgctgtggggccgc
ccggcgctcgccacttccggcgcgttggggctgttggtcgggggcggccgcgcggtacta
gcgggcggctccagggcgggcgcgcgcaaggatgctctagggggcggcggcagtggccgt
gtgggttga

>gi568815582r:27998542_28281032|GENSCAN_predicted_peptide_6|163_aa
MVYMFRYDCIRSKFHGTVKAENGEIPSSSSRSKIPPKSNEEMLNIIPASTGAAKAAGKVI
PELNGKLTCMAFSVPAANVSVVDLTCRLEKPVEYDDIKKGIWGYTEHQVVSSDFNRDTHS
STFDAGAGIALNDHFVKLVSWYENEFGYSNRVADLMAHMASKE

>gi568815582r:27998542_28281032|GENSCAN_predicted_CDS_6|492_bp
atggtctacatgttccggtatgattgcatccgtagcaaattccatggcactgtcaaggct
gagaacggggaaatcccatcatcatcttccagaagcaagatccctccaaaatcaaatgag
gagatgctgaacatcatccctgcctctactggtgctgccaaggctgcgggtaaggtcatc
cctgagctgaatgggaagctcacttgcatggccttcagtgtccccgctgccaacgtgtcg
gtcgtggacctgacctgccgcctggaaaaacctgtcgaatatgacgacatcaagaagggc
atctggggctacactgaacaccaggttgtctcctccgacttcaaccgtgacactcattct
tccaccttcgacgctggggctggcattgccctcaacgaccactttgtcaagctcgtttcc
tggtatgagaatgaatttggctacagcaacagggtggcggacctcatggcccacatggcc
tccaaggagtaa

>gi568815582r:27998542_28281032|GENSCAN_predicted_peptide_7|184_aa
MLPEALSPFYPRGAALSSQCPFPGPPNFLGVHVEGHLGIQVAGHRFARPSPVAGTPTGQD
RSPRQTEPPAPPPTEATGNLSEKAQVAGGQVQSPEADGLLTLERPGSGTPAQAGDDAAEA
TPGHPCPVLELPPAWPMGCGVDDVPAFCFVCFHREEEEELLEEVPLRSSSAQPSPGHIRS
RERD

>gi568815582r:27998542_28281032|GENSCAN_predicted_CDS_7|555_bp
atgctccctgaagccctgagccccttctatcccagaggagctgccctgagctcccagtgc
cccttcccagggccccccaacttcctgggggtacatgtggagggccacctcggaatccag
gtggctggacaccgcttcgcacggcccagccccgtggctggaacccccacgggtcaagac
aggagcccccgccagacagagcccccggctcctccacccaccgaggcgacgggcaacctg
agtgagaaggcacaggtggcgggcgggcaagtgcagagccctgaagccgacgggctgctg
accctggagcgccctggctcggggactcctgcccaggctggcgatgatgctgcggaggcc
acccctggccacccctgccctgtcctggagctgcctccggcctggcccatgggctgcgga
gtcgatgatgtgccggccttctgcttcgtctgcttccacagggaggaggaagaggagctg
ctggaagaagtcccattgcggagctcctccgcccagccctccccaggccacatccggtcc
cgggagagagactga