Result of FASTA (ccds) for pF1KSDF0168
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDF0168, 567 aa
  1>>>pF1KSDF0168 567 - 567 aa - 567 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6646+/-0.000837; mu= 17.3022+/- 0.050
 mean_var=76.4387+/-15.755, 0's: 0 Z-trim(107.7): 23  B-trim: 0 in 0/50
 Lambda= 0.146696
 statistics sampled from 9735 (9754) to 9735 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.3), width:  16
 Scan time:  3.670

The best scores are:                                      opt bits E(32554)
CCDS12787.1 IL4I1 gene_id:259307|Hs108|chr19       ( 567) 3817 817.4       0
CCDS12786.1 IL4I1 gene_id:259307|Hs108|chr19       ( 589) 3793 812.4       0
CCDS14261.1 MAOB gene_id:4129|Hs108|chrX           ( 520)  400 94.2 4.1e-19
CCDS14260.1 MAOA gene_id:4128|Hs108|chrX           ( 527)  356 84.9 2.6e-16


>>CCDS12787.1 IL4I1 gene_id:259307|Hs108|chr19            (567 aa)
 initn: 3817 init1: 3817 opt: 3817  Z-score: 4364.3  bits: 817.4 E(32554):    0
Smith-Waterman score: 3817; 100.0% identity (100.0% similar) in 567 aa overlap (1-567:1-567)

               10        20        30        40        50        60
pF1KSD MAPLALHLLVLVPILLSLVASQDWKAERSQDPFEKCMQDPDYEQLLKVVTWGLNRTLKPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAPLALHLLVLVPILLSLVASQDWKAERSQDPFEKCMQDPDYEQLLKVVTWGLNRTLKPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD RVIVVGAGVAGLVAAKVLSDAGHKVTILEADNRIGGRIFTYRDQNTGWIGELGAMRMPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RVIVVGAGVAGLVAAKVLSDAGHKVTILEADNRIGGRIFTYRDQNTGWIGELGAMRMPSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD HRILHKLCQGLGLNLTKFTQYDKNTWTEVHEVKLRNYVVEKVPEKLGYALRPQEKGHSPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HRILHKLCQGLGLNLTKFTQYDKNTWTEVHEVKLRNYVVEKVPEKLGYALRPQEKGHSPE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DIYQMALNQALKDLKALGCRKAMKKFERHTLLEYLLGEGNLSRPAVQLLGDVMSEDGFFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DIYQMALNQALKDLKALGCRKAMKKFERHTLLEYLLGEGNLSRPAVQLLGDVMSEDGFFY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LSFAEALRAHSCLSDRLQYSRIVGGWDLLPRALLSSLSGLVLLNAPVVAMTQGPHDVHVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LSFAEALRAHSCLSDRLQYSRIVGGWDLLPRALLSSLSGLVLLNAPVVAMTQGPHDVHVQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IETSPPARNLKVLKADVVLLTASGPAVKRITFSPPLPRHMQEALRRLHYVPATKVFLSFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IETSPPARNLKVLKADVVLLTASGPAVKRITFSPPLPRHMQEALRRLHYVPATKVFLSFR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RPFWREEHIEGGHSNTDRPSRMIFYPPPREGALLLASYTWSDAAAAFAGLSREEALRLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RPFWREEHIEGGHSNTDRPSRMIFYPPPREGALLLASYTWSDAAAAFAGLSREEALRLAL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DDVAALHGPVVRQLWDGTGVVKRWAEDQHSQGGFVVQPPALWQTEKDDWTVPYGRIYFAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DDVAALHGPVVRQLWDGTGVVKRWAEDQHSQGGFVVQPPALWQTEKDDWTVPYGRIYFAG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD EHTAYPHGWVETAVKSALRAAIKINSRKGPASDTASPEGHASDMEGQGHVHGVASSPSHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EHTAYPHGWVETAVKSALRAAIKINSRKGPASDTASPEGHASDMEGQGHVHGVASSPSHD
              490       500       510       520       530       540

              550       560       
pF1KSD LAKEEGSHPPVQGQLSLQNTTHTRTSH
       :::::::::::::::::::::::::::
CCDS12 LAKEEGSHPPVQGQLSLQNTTHTRTSH
              550       560       

>>CCDS12786.1 IL4I1 gene_id:259307|Hs108|chr19            (589 aa)
 initn: 3793 init1: 3793 opt: 3793  Z-score: 4336.6  bits: 812.4 E(32554):    0
Smith-Waterman score: 3793; 99.6% identity (99.8% similar) in 565 aa overlap (3-567:25-589)

                                     10        20        30        
pF1KSD                       MAPLALHLLVLVPILLSLVASQDWKAERSQDPFEKCMQ
                               : .:::::::::::::::::::::::::::::::::
CCDS12 MPNDDFCPGLTIKAMGAERAPQRQPCTLHLLVLVPILLSLVASQDWKAERSQDPFEKCMQ
               10        20        30        40        50        60

       40        50        60        70        80        90        
pF1KSD DPDYEQLLKVVTWGLNRTLKPQRVIVVGAGVAGLVAAKVLSDAGHKVTILEADNRIGGRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DPDYEQLLKVVTWGLNRTLKPQRVIVVGAGVAGLVAAKVLSDAGHKVTILEADNRIGGRI
               70        80        90       100       110       120

      100       110       120       130       140       150        
pF1KSD FTYRDQNTGWIGELGAMRMPSSHRILHKLCQGLGLNLTKFTQYDKNTWTEVHEVKLRNYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FTYRDQNTGWIGELGAMRMPSSHRILHKLCQGLGLNLTKFTQYDKNTWTEVHEVKLRNYV
              130       140       150       160       170       180

      160       170       180       190       200       210        
pF1KSD VEKVPEKLGYALRPQEKGHSPEDIYQMALNQALKDLKALGCRKAMKKFERHTLLEYLLGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VEKVPEKLGYALRPQEKGHSPEDIYQMALNQALKDLKALGCRKAMKKFERHTLLEYLLGE
              190       200       210       220       230       240

      220       230       240       250       260       270        
pF1KSD GNLSRPAVQLLGDVMSEDGFFYLSFAEALRAHSCLSDRLQYSRIVGGWDLLPRALLSSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GNLSRPAVQLLGDVMSEDGFFYLSFAEALRAHSCLSDRLQYSRIVGGWDLLPRALLSSLS
              250       260       270       280       290       300

      280       290       300       310       320       330        
pF1KSD GLVLLNAPVVAMTQGPHDVHVQIETSPPARNLKVLKADVVLLTASGPAVKRITFSPPLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GLVLLNAPVVAMTQGPHDVHVQIETSPPARNLKVLKADVVLLTASGPAVKRITFSPPLPR
              310       320       330       340       350       360

      340       350       360       370       380       390        
pF1KSD HMQEALRRLHYVPATKVFLSFRRPFWREEHIEGGHSNTDRPSRMIFYPPPREGALLLASY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HMQEALRRLHYVPATKVFLSFRRPFWREEHIEGGHSNTDRPSRMIFYPPPREGALLLASY
              370       380       390       400       410       420

      400       410       420       430       440       450        
pF1KSD TWSDAAAAFAGLSREEALRLALDDVAALHGPVVRQLWDGTGVVKRWAEDQHSQGGFVVQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TWSDAAAAFAGLSREEALRLALDDVAALHGPVVRQLWDGTGVVKRWAEDQHSQGGFVVQP
              430       440       450       460       470       480

      460       470       480       490       500       510        
pF1KSD PALWQTEKDDWTVPYGRIYFAGEHTAYPHGWVETAVKSALRAAIKINSRKGPASDTASPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PALWQTEKDDWTVPYGRIYFAGEHTAYPHGWVETAVKSALRAAIKINSRKGPASDTASPE
              490       500       510       520       530       540

      520       530       540       550       560       
pF1KSD GHASDMEGQGHVHGVASSPSHDLAKEEGSHPPVQGQLSLQNTTHTRTSH
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GHASDMEGQGHVHGVASSPSHDLAKEEGSHPPVQGQLSLQNTTHTRTSH
              550       560       570       580         

>>CCDS14261.1 MAOB gene_id:4129|Hs108|chrX                (520 aa)
 initn: 350 init1: 197 opt: 400  Z-score: 456.6  bits: 94.2 E(32554): 4.1e-19
Smith-Waterman score: 415; 24.6% identity (55.3% similar) in 488 aa overlap (62-527:7-475)

              40        50        60        70        80        90 
pF1KSD PFEKCMQDPDYEQLLKVVTWGLNRTLKPQRVIVVGAGVAGLVAAKVLSDAGHKVTILEAD
                                     :.:::.:..:..:::.: :.: .:..::: 
CCDS14                         MSNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEAR
                                       10        20        30      

             100       110       120       130       140       150 
pF1KSD NRIGGRIFTYRDQNTGWIGELGAMRMPSSHRILHKLCQGLGLNLTKFTQYDKNTWTEVHE
       .:.::: .: :.:.. ..   :..  :...::: .: . :::.  : .. ..     .:.
CCDS14 DRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRIL-RLAKELGLETYKVNEVER----LIHH
         40        50        60         70        80            90 

             160       170       180       190       200           
pF1KSD VKLRNYVVEKVPEKLGYALRPQEKGHSPEDIYQMALNQALKDLKALGCRKA--MKKFERH
       :: ..:     : .  .    .   .  .. .  ....  ... . .  ::   ....  
CCDS14 VKGKSY-----PFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNM
                  100       110       120       130       140      

     210       220                230       240       250          
pF1KSD TLLEYLLGEGNLSRPAVQL---------LGDVMSEDGFFYLSFAEALRAHSCL---SDRL
       :. : :: .   .. : ::          ...   .....: ...   . . .   ..  
CCDS14 TMKE-LLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGG
        150        160       170       180       190       200     

       260       270       280       290       300       310       
pF1KSD QYSRIVGGWDLLPRALLSSLSGLVLLNAPVVAMTQGPHDVHVQIETSPPARNLKVLKADV
       :  ..:::   . . ... :.  : :. ::. . :  ..: :.      . : .. .:  
CCDS14 QERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVE------TLNHEMYEAKY
         210       220       230       240             250         

       320        330       340       350       360       370      
pF1KSD VLLTASGPAVK-RITFSPPLPRHMQEALRRLHYVPATKVFLSFRRPFWREEHIEGGH--S
       :. .:  :..  .: :.::::   .. . :.    . : .. ...::::..   :    .
CCDS14 VI-SAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIID
     260        270       280       290       300       310        

          380       390        400       410       420       430   
pF1KSD NTDRPSRMIFYPPPREGALL-LASYTWSDAAAAFAGLSREEALRLALDDVAALHGPVVRQ
       . . :  . .     ::    . ..  .  :  .: :..:: :.   .  : . : . . 
CCDS14 GEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSL-EA
      320       330       340       350       360       370        

           440       450        460       470       480        490 
pF1KSD LWDGTGVVKRWAEDQHSQGGFVVQ-PPALWQTEKDDWTVPYGRIYFAGEHTA-YPHGWVE
       :       : : :.:.: : ...  ::..          :  :::::: .:: .  :..:
CCDS14 LEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYME
       380       390       400       410       420       430       

             500         510       520       530       540         
pF1KSD TAVKSALRAAIKINSRKG--PASDTASPEGHASDMEGQGHVHGVASSPSHDLAKEEGSHP
        ::... ::: .:    :  : ..  . : .. :. .:                      
CCDS14 GAVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLIG
       440       450       460       470       480       490       

     550       560            
pF1KSD PVQGQLSLQNTTHTRTSH     
                              
CCDS14 LTTIFSATALGFLAHKRGLLVRV
       500       510       520

>>CCDS14260.1 MAOA gene_id:4128|Hs108|chrX                (527 aa)
 initn: 331 init1: 189 opt: 356  Z-score: 406.2  bits: 84.9 E(32554): 2.6e-16
Smith-Waterman score: 365; 25.3% identity (52.2% similar) in 490 aa overlap (62-513:16-468)

              40        50        60        70        80        90 
pF1KSD PFEKCMQDPDYEQLLKVVTWGLNRTLKPQRVIVVGAGVAGLVAAKVLSDAGHKVTILEAD
                                     :.:.:.:..:: :::.:.. : .: .::: 
CCDS14                MENQEKASIAGHMFDVVVIGGGISGLSAAKLLTEYGVSVLVLEAR
                              10        20        30        40     

             100       110       120       130             140     
pF1KSD NRIGGRIFTYRDQNTGWIGELGAMRMPSSHRILHKLCQGLGLNLTK------FTQYDKN-
       .:.::: .: :.... ..   ::.  :...::: .: . ::..  :      ..:: :. 
CCDS14 DRVGGRTYTIRNEHVDYVDVGGAYVGPTQNRIL-RLSKELGIETYKVNVSERLVQYVKGK
          50        60        70         80        90       100    

                    150       160       170          180       190 
pF1KSD ----------TWTEVHEVKLRNYVVEKVPEKLGYAL---RPQEKGHSPEDIYQMALNQAL
                 .:. .  .   :  . .. ...:  .    : :  :.  : ..   ....
CCDS14 TYPFRGAFPPVWNPIAYLDYNN--LWRTIDNMGKEIPTDAPWEAQHA--DKWD---KMTM
          110       120         130       140         150          

              200       210       220            230       240     
pF1KSD KDLKALGC-RKAMKKFERHTLLEYLLGEGNL-SRP----AVQLLGDVMSEDGFFYLSFAE
       :.:    :  :. ..:       ::. . :. :.:    :. .:  : .  :        
CCDS14 KELIDKICWTKTARRFA------YLFVNINVTSEPHEVSALWFLWYVKQCGG--------
       160       170             180       190       200           

         250       260       270       280       290       300     
pF1KSD ALRAHSCLSDRLQYSRIVGGWDLLPRALLSSLSGLVLLNAPVVAMTQGPHDVHVQIETSP
       . :  : ...  :  ..:::   . . ... :.  : :: ::. . :.  .. ..  .  
CCDS14 TTRIFS-VTNGGQERKFVGGSGQVSERIMDLLGDQVKLNHPVTHVDQSSDNIIIETLNHE
            210       220       230       240       250       260  

         310       320       330       340       350       360     
pF1KSD PARNLKVLKADVVLLTASGPAVKRITFSPPLPRHMQEALRRLHYVPATKVFLSFRRPFWR
         .   :..:    :::      .: : : :: . .. ..:: .  . : .. ... ::.
CCDS14 HYECKYVINAIPPTLTA------KIHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWK
            270             280       290       300       310      

         370         380       390        400       410            
pF1KSD EEHIEGGH--SNTDRPSRMIFYPPPREGAL-LLASYTWSDAAAAFAGLSRE-------EA
       ..   :     . : :  . .     .:.:  . ..  .  :  .: : .:       : 
CCDS14 KKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICEL
        320       330       340       350       360       370      

         420       430       440       450        460       470    
pF1KSD LRLALDDVAALHGPVVRQLWDGTGVVKRWAEDQHSQGGFVVQ-PPALWQTEKDDWTVPYG
          .: .  ::: ::  .        : : :.:.: : ...  ::..          : :
CCDS14 YAKVLGSQEALH-PVHYEE-------KNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVG
        380        390              400       410       420        

          480        490       500       510       520       530   
pF1KSD RIYFAGEHTAYP-HGWVETAVKSALRAAIKINSRKGPASDTASPEGHASDMEGQGHVHGV
       ::.::: .::    :..: ::... ::: .. .  : ...                    
CCDS14 RIFFAGTETATKWSGYMEGAVEAGERAAREVLNGLGKVTEKDIWVQEPESKDVPAVEITH
      430       440       450       460       470       480        

           540       550       560            
pF1KSD ASSPSHDLAKEEGSHPPVQGQLSLQNTTHTRTSH     
                                              
CCDS14 TFWERNLPSVSGLLKIIGFSTSVTALGFVLYKYKLLPRS
      490       500       510       520       




567 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:53:59 2016 done: Thu Nov  3 08:53:59 2016
 Total Scan time:  3.670 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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