Result of FASTA (omim) for pF1KSDF0106
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDF0106, 366 aa
  1>>>pF1KSDF0106 366 - 366 aa - 366 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.5436+/-0.000338; mu= -7.0717+/- 0.021
 mean_var=258.2186+/-53.309, 0's: 0 Z-trim(123.7): 96  B-trim: 1125 in 1/53
 Lambda= 0.079814
 statistics sampled from 44013 (44130) to 44013 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.517), width:  16
 Scan time: 10.790

The best scores are:                                      opt bits E(85289)
NP_789847 (OMIM: 609722) PDZ and LIM domain protei ( 366) 2442 293.7 4.6e-79
NP_067643 (OMIM: 609722) PDZ and LIM domain protei ( 602) 2175 263.0 1.2e-69
NP_932159 (OMIM: 609722) PDZ and LIM domain protei ( 278) 1660 203.5 4.6e-52
NP_055291 (OMIM: 605889) PDZ and LIM domain protei ( 364)  423 61.2 4.4e-09
XP_011538632 (OMIM: 605900) PREDICTED: PDZ and LIM ( 226)  358 53.6 5.3e-07
NP_001124499 (OMIM: 166710,603422) PDZ and LIM dom ( 246)  351 52.8 9.9e-07
NP_003678 (OMIM: 166710,603422) PDZ and LIM domain ( 330)  350 52.7 1.4e-06
NP_001073584 (OMIM: 605906,609452) LIM domain-bind ( 330)  306 47.7 4.6e-05
XP_016871097 (OMIM: 605906,609452) PREDICTED: LIM  ( 330)  306 47.7 4.6e-05
XP_005269525 (OMIM: 605906,609452) PREDICTED: LIM  ( 330)  306 47.7 4.6e-05
NP_005442 (OMIM: 605903) PDZ and LIM domain protei ( 457)  309 48.1 4.7e-05
NP_001165082 (OMIM: 605906,609452) LIM domain-bind ( 398)  306 47.7 5.4e-05
XP_011537497 (OMIM: 605906,609452) PREDICTED: LIM  ( 398)  306 47.7 5.4e-05
XP_016863146 (OMIM: 605904) PREDICTED: PDZ and LIM ( 602)  310 48.3 5.5e-05
NP_001244891 (OMIM: 605889) PDZ and LIM domain pro ( 276)  301 47.1 5.9e-05
XP_005262750 (OMIM: 605904) PREDICTED: PDZ and LIM ( 734)  310 48.3 6.5e-05
NP_006448 (OMIM: 605904) PDZ and LIM domain protei ( 596)  307 47.9   7e-05
XP_006714132 (OMIM: 605904) PREDICTED: PDZ and LIM ( 607)  307 47.9 7.1e-05
XP_005262752 (OMIM: 605904) PREDICTED: PDZ and LIM ( 728)  307 48.0 8.2e-05
XP_005269523 (OMIM: 605906,609452) PREDICTED: LIM  ( 664)  306 47.8 8.3e-05
XP_006714129 (OMIM: 605904) PREDICTED: PDZ and LIM ( 739)  307 48.0 8.3e-05
XP_005269521 (OMIM: 605906,609452) PREDICTED: LIM  ( 727)  306 47.9 8.9e-05
NP_009009 (OMIM: 605906,609452) LIM domain-binding ( 727)  306 47.9 8.9e-05
NP_001165081 (OMIM: 605906,609452) LIM domain-bind ( 732)  306 47.9   9e-05
XP_011537490 (OMIM: 605906,609452) PREDICTED: LIM  ( 743)  306 47.9 9.1e-05
XP_016871095 (OMIM: 605906,609452) PREDICTED: LIM  ( 743)  306 47.9 9.1e-05
XP_011537489 (OMIM: 605906,609452) PREDICTED: LIM  ( 748)  306 47.9 9.1e-05
XP_011537488 (OMIM: 605906,609452) PREDICTED: LIM  ( 795)  306 47.9 9.6e-05
XP_011537487 (OMIM: 605906,609452) PREDICTED: LIM  ( 811)  306 47.9 9.8e-05
XP_011537486 (OMIM: 605906,609452) PREDICTED: LIM  ( 811)  306 47.9 9.8e-05
XP_011537492 (OMIM: 605906,609452) PREDICTED: LIM  ( 680)  297 46.8 0.00017
XP_011537491 (OMIM: 605906,609452) PREDICTED: LIM  ( 696)  297 46.8 0.00018
XP_006714133 (OMIM: 605904) PREDICTED: PDZ and LIM ( 605)  295 46.5 0.00018
XP_011529845 (OMIM: 605904) PREDICTED: PDZ and LIM ( 600)  294 46.4  0.0002
NP_001011516 (OMIM: 605904) PDZ and LIM domain pro ( 214)  280 44.6 0.00025
NP_001011515 (OMIM: 605904) PDZ and LIM domain pro ( 234)  280 44.6 0.00027
NP_001107579 (OMIM: 605889) PDZ and LIM domain pro ( 316)  283 45.0 0.00028
XP_016871098 (OMIM: 605906,609452) PREDICTED: LIM  ( 283)  279 44.5 0.00035
NP_001073585 (OMIM: 605906,609452) LIM domain-bind ( 283)  279 44.5 0.00035
NP_001243356 (OMIM: 605904) PDZ and LIM domain pro ( 483)  280 44.8  0.0005
NP_001011513 (OMIM: 605904) PDZ and LIM domain pro ( 487)  280 44.8 0.00051
XP_005262755 (OMIM: 605904) PREDICTED: PDZ and LIM ( 493)  280 44.8 0.00051
XP_016863147 (OMIM: 605904) PREDICTED: PDZ and LIM ( 498)  280 44.8 0.00052
XP_005262753 (OMIM: 605904) PREDICTED: PDZ and LIM ( 619)  280 44.8 0.00062
NP_001243355 (OMIM: 605904) PDZ and LIM domain pro ( 625)  280 44.8 0.00063
XP_006714131 (OMIM: 605904) PREDICTED: PDZ and LIM ( 630)  280 44.8 0.00063
NP_001073583 (OMIM: 605906,609452) LIM domain-bind ( 617)  279 44.7 0.00067
NP_001244892 (OMIM: 605889) PDZ and LIM domain pro ( 197)  266 43.0 0.00072
NP_066272 (OMIM: 605900) PDZ and LIM domain protei ( 329)  265 43.0  0.0012
NP_998801 (OMIM: 605903) PDZ and LIM domain protei ( 222)  260 42.3  0.0013


>>NP_789847 (OMIM: 609722) PDZ and LIM domain protein 2   (366 aa)
 initn: 2442 init1: 2442 opt: 2442  Z-score: 1540.5  bits: 293.7 E(85289): 4.6e-79
Smith-Waterman score: 2442; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366)

               10        20        30        40        50        60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_789 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_789 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_789 SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_789 AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_789 SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD QEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAKRRDRRKTRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_789 QEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAKRRDRRKTRR
              310       320       330       340       350       360

             
pF1KSD PIQPSW
       ::::::
NP_789 PIQPSW
             

>>NP_067643 (OMIM: 609722) PDZ and LIM domain protein 2   (602 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 1371.1  bits: 263.0 E(85289): 1.2e-69
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:251-577)

                                             10        20        30
pF1KSD                               MALTVDVAGPAPWGFRITGGRDFHTPIMVT
                                     ::::::::::::::::::::::::::::::
NP_067 GGSRTGRAGPSGWAPPRGARSAESTDRLKGMALTVDVAGPAPWGFRITGGRDFHTPIMVT
              230       240       250       260       270       280

               40        50        60        70        80        90
pF1KSD KVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRSQATSPGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 KVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRSQATSPGQ
              290       300       310       320       330       340

              100       110       120       130       140       150
pF1KSD TNGDSSLEVLATRFQGSVRTYTESQSSLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 TNGDSSLEVLATRFQGSVRTYTESQSSLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAA
              350       360       370       380       390       400

              160       170       180       190       200       210
pF1KSD ISRSFQSLACSPGLPAADRLSYSGRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 ISRSFQSLACSPGLPAADRLSYSGRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSE
              410       420       430       440       450       460

              220       230       240       250       260       270
pF1KSD GGSLLLDEDSEVFKMLQENREGRAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 GGSLLLDEDSEVFKMLQENREGRAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSS
              470       480       490       500       510       520

              280       290       300       310       320       330
pF1KSD LPASRALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWEDA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
NP_067 LPASRALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWVGD
              530       540       550       560       570       580

              340       350       360      
pF1KSD CAMEGMRLSLEALEGMVEGAKRRDRRKTRRPIQPSW
                                           
NP_067 ELYCEKHARQRYSAPATLSSRA              
              590       600                

>>NP_932159 (OMIM: 609722) PDZ and LIM domain protein 2   (278 aa)
 initn: 1658 init1: 1658 opt: 1660  Z-score: 1055.6  bits: 203.5 E(85289): 4.6e-52
Smith-Waterman score: 1660; 93.2% identity (95.0% similar) in 279 aa overlap (1-279:1-276)

               10        20        30        40        50        60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRI
       :::::::::::::::     : .:    .. ::.  . :                     
NP_932 SFRLLQEALEAEERGTR---LCASRRAGTATPAATPVPTVG                   
              250          260       270                           

              310       320       330       340       350       360
pF1KSD QEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAKRRDRRKTRR

>>NP_055291 (OMIM: 605889) PDZ and LIM domain protein 3   (364 aa)
 initn: 498 init1: 283 opt: 423  Z-score: 284.1  bits: 61.2 E(85289): 4.4e-09
Smith-Waterman score: 519; 31.3% identity (61.2% similar) in 345 aa overlap (1-327:1-334)

               10        20        30        40        50        60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
       :  :: . ::::::::..:: ::. :...:...  .::  :.: :::.:.::.: ..:.:
NP_055 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
               10        20        30        40        50        60

               70        80          90       100         110      
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQAT--SPGQTNGDSSLEVLATRFQGSVR--TYTESQS
        ::.::..:. .   : :..::...   :: :.. :.. . .   ...  .  .: : . 
NP_055 THADAQDRIKAAAHQLCLKIDRGETHLWSP-QVSEDGKAHPFKINLESEPQDGNYFEHKH
               70        80        90        100       110         

        120       130       140       150        160       170     
pF1KSD SLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISR-SFQSLACSPGLPAADRLSYS--
       ..:    .:  .  :. :  : : . .  .:... :  :  :  :   : .: .:. .  
NP_055 NIR---PKPFVIPGRS-SGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIP
     120          130        140       150       160       170     

                  180       190       200           210       220  
pF1KSD ---GRPGSR----QAGLGRAGDSAVLVLPPSPGPRSS----RPSMDSEGGSLLLDEDSEV
            :: .    : .      :   ..    :  :.     : :.   .:.    .:.:
NP_055 LEMELPGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASV--PPESDV
         180       190       200       210       220         230   

            230       240       250       260       270       280  
pF1KSD FKMLQENREGRAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPK
       ..::..::.  . ::::.:::.::  .. .     ::   :  .: ... .. . :   .
NP_055 YRMLHDNRNEPTQPRQSGSFRVLQGMVD-DGSDDRPAGTRSVRAPVTKVHGGSGGA--QR
           240       250       260        270       280         290

            290       300       310       320       330       340  
pF1KSD LHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEA
       .  :.::...:.. .:. .. .:::: :..::::.::::..:.:.               
NP_055 MPLCDKCGSGIVGAVVKARD-KYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARART
              300       310        320       330       340         

            350       360      
pF1KSD LEGMVEGAKRRDRRKTRRPIQPSW
                               
NP_055 KPPEGYDTVTLYPKA         
     350       360             

>>XP_011538632 (OMIM: 605900) PREDICTED: PDZ and LIM dom  (226 aa)
 initn: 341 init1: 194 opt: 358  Z-score: 246.8  bits: 53.6 E(85289): 5.3e-07
Smith-Waterman score: 375; 36.9% identity (67.0% similar) in 203 aa overlap (131-329:19-200)

              110       120       130       140       150       160
pF1KSD ATRFQGSVRTYTESQSSLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLAC
                                     :.. ::.  :.::  :   .:. .... : 
XP_011             MNLASEPQEVLHIGSAHNRSAMPFTASPASS--TTARVITNQYNNPA-
                           10        20        30          40      

              170        180       190       200       210         
pF1KSD SPGLPAADRLS-YSGRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDED
         :: ... .: ...   :. :. :  ..:        :  ... ::      ::..:..
XP_011 --GLYSSENISNFNNALESKTAASGVEANS-------RPLDHAQPPS------SLVIDKE
            50        60        70               80              90

     220       230       240       250         260       270       
pF1KSD SEVFKMLQENREGRAAPRQSSSFRLLQEALEAEERG--GTPAFLPSSLSPQSSLPASRAL
       :::.:::::..:    :.::.:: .::: ::.::.:  . :. . :  .: ... ::  .
XP_011 SEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVAAS--I
              100       110       120       130       140          

       280       290       300       310       320        330      
pF1KSD ATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFW-EDACAMEGM
       ..  ::  :.::.:.:..  :.... :.::: ::.:.::: :::..:::. ::       
XP_011 GNAQKLPMCDKCGTGIVGVFVKLRD-RHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKH
      150       160       170        180       190       200       

        340       350       360      
pF1KSD RLSLEALEGMVEGAKRRDRRKTRRPIQPSW
                                     
XP_011 ARERVTPPEGYEVVTVFPK           
       210       220                 

>>NP_001124499 (OMIM: 166710,603422) PDZ and LIM domain   (246 aa)
 initn: 451 init1: 275 opt: 351  Z-score: 241.8  bits: 52.8 E(85289): 9.9e-07
Smith-Waterman score: 405; 33.5% identity (56.7% similar) in 284 aa overlap (1-279:1-244)

               10        20        30        40        50        60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
       :  .: . ::.:::::..::::: .:. ...:   .::  : : :::.: ::::::.: :
NP_001 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
        : :::..:.   . : :...: .. :  ..  ::. ..   ...  ..  . . :   :
NP_001 THLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPS
               70        80        90       100       110       120

               130       140          150       160       170      
pF1KSD -SYSSPTSLSPRAGSPFSPPPS---SSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRP
        . ..: .  :  :::.. ::      . ..::..  ....:  ::  :.::       :
NP_001 GTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPP-PSAD-------P
              130       140       150       160        170         

        180       190       200       210       220       230      
pF1KSD GSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAA-
       .    :: :. :  :                         :  :::..::.:  :  :: 
NP_001 AR---GLPRSRDCRV-------------------------DLGSEVYRMLREPAEPVAAE
               180                                190       200    

         240       250       260       270       280       290     
pF1KSD PRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIAN
       :.::.::: ::  ::: : ::.:.   :  . .:..:..   .:                
NP_001 PKQSGSFRYLQGMLEAGE-GGAPS---SRHGTSSTIPSASCAVTAA              
          210       220           230       240                    

         300       310       320       330       340       350     
pF1KSD QAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAKRRDR

>>NP_003678 (OMIM: 166710,603422) PDZ and LIM domain pro  (330 aa)
 initn: 517 init1: 275 opt: 350  Z-score: 239.3  bits: 52.7 E(85289): 1.4e-06
Smith-Waterman score: 548; 34.3% identity (57.7% similar) in 338 aa overlap (1-329:1-297)

               10        20        30        40        50        60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
       :  .: . ::.:::::..::::: .:. ...:   .::  : : :::.: ::::::.: :
NP_003 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
        : :::..:.   . : :...: .. :  ..  ::. ..   ...  ..  . . :   :
NP_003 THLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPS
               70        80        90       100       110       120

               130       140          150       160       170      
pF1KSD -SYSSPTSLSPRAGSPFSPPPS---SSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRP
        . ..: .  :  :::.. ::      . ..::..  ....:  ::  :.::       :
NP_003 GTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPP-PSAD-------P
              130       140       150       160        170         

        180       190       200       210       220       230      
pF1KSD GSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAA-
       .    :: :. :  :                         :  :::..::.:  :  :: 
NP_003 AR---GLPRSRDCRV-------------------------DLGSEVYRMLREPAEPVAAE
               180                                190       200    

         240       250       260       270       280           290 
pF1KSD PRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATP----PKLHTCEKCST
       :.::.::: ::  ::: : :  :.  :..  :..  :..  :..:      :  : .:. 
NP_003 PKQSGSFRYLQGMLEAGEGGDWPG--PGG--PRNLKPTASKLGAPLSGLQGLPECTRCGH
          210       220         230         240       250       260

             300       310       320       330       340       350 
pF1KSD SIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAK
       .:..  :. ..  : :: :. :.:::::::.::.:. :                      
NP_003 GIVGTIVKARDKLY-HPECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKPPEGYDVV
              270        280       290       300       310         

             360      
pF1KSD RRDRRKTRRPIQPSW
                      
NP_003 AVYPNAKVELV    
     320       330    

>>NP_001073584 (OMIM: 605906,609452) LIM domain-binding   (330 aa)
 initn: 291 init1: 266 opt: 306  Z-score: 211.9  bits: 47.7 E(85289): 4.6e-05
Smith-Waterman score: 317; 30.5% identity (59.7% similar) in 243 aa overlap (1-235:1-223)

               10        20        30        40        50        60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
       :. .: ..::.:::::. ::.::. :. .....  .:: ...:  ::..:::.: ... :
NP_001 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM
               10        20        30        40        50        60

               70        80        90          100       110       
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNG---DSSLEVLATRFQGSVRTYTESQSS
        : :::.::...   : : :..:.   : .:..   .. : :.  . . ..    ....:
NP_001 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKDPAL----DTNGS
               70        80        90       100       110          

       120       130       140       150           160       170   
pF1KSD LRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISR--SFQSLA--CSPGLPAADRLSYS
       : .   :: .   :: :: .:       :   :.::  .:.:::   .:: : :.  . .
NP_001 LVAPSPSPEA---RA-SPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKT
        120           130       140       150       160       170  

           180       190       200       210        220       230  
pF1KSD GRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDED-SEVFKMLQENREG
       .  :.:.            .: :.  : ::.: . ..  .:   :   :. .: : . .:
NP_001 SPEGARD------------LLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG
                        180       190       200       210       220

            240       250       260       270       280       290  
pF1KSD RAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTS
       .:.                                                         
NP_001 KASGVGLPGGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQ
              230       240       250       260       270       280

>>XP_016871097 (OMIM: 605906,609452) PREDICTED: LIM doma  (330 aa)
 initn: 291 init1: 266 opt: 306  Z-score: 211.9  bits: 47.7 E(85289): 4.6e-05
Smith-Waterman score: 317; 30.5% identity (59.7% similar) in 243 aa overlap (1-235:1-223)

               10        20        30        40        50        60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
       :. .: ..::.:::::. ::.::. :. .....  .:: ...:  ::..:::.: ... :
XP_016 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM
               10        20        30        40        50        60

               70        80        90          100       110       
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNG---DSSLEVLATRFQGSVRTYTESQSS
        : :::.::...   : : :..:.   : .:..   .. : :.  . . ..    ....:
XP_016 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKDPAL----DTNGS
               70        80        90       100       110          

       120       130       140       150           160       170   
pF1KSD LRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISR--SFQSLA--CSPGLPAADRLSYS
       : .   :: .   :: :: .:       :   :.::  .:.:::   .:: : :.  . .
XP_016 LVAPSPSPEA---RA-SPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKT
        120           130       140       150       160       170  

           180       190       200       210        220       230  
pF1KSD GRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDED-SEVFKMLQENREG
       .  :.:.            .: :.  : ::.: . ..  .:   :   :. .: : . .:
XP_016 SPEGARD------------LLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG
                        180       190       200       210       220

            240       250       260       270       280       290  
pF1KSD RAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTS
       .:.                                                         
XP_016 KASGVGLPGGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQ
              230       240       250       260       270       280

>>XP_005269525 (OMIM: 605906,609452) PREDICTED: LIM doma  (330 aa)
 initn: 291 init1: 266 opt: 306  Z-score: 211.9  bits: 47.7 E(85289): 4.6e-05
Smith-Waterman score: 317; 30.5% identity (59.7% similar) in 243 aa overlap (1-235:1-223)

               10        20        30        40        50        60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
       :. .: ..::.:::::. ::.::. :. .....  .:: ...:  ::..:::.: ... :
XP_005 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM
               10        20        30        40        50        60

               70        80        90          100       110       
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNG---DSSLEVLATRFQGSVRTYTESQSS
        : :::.::...   : : :..:.   : .:..   .. : :.  . . ..    ....:
XP_005 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKDPAL----DTNGS
               70        80        90       100       110          

       120       130       140       150           160       170   
pF1KSD LRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISR--SFQSLA--CSPGLPAADRLSYS
       : .   :: .   :: :: .:       :   :.::  .:.:::   .:: : :.  . .
XP_005 LVAPSPSPEA---RA-SPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKT
        120           130       140       150       160       170  

           180       190       200       210        220       230  
pF1KSD GRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDED-SEVFKMLQENREG
       .  :.:.            .: :.  : ::.: . ..  .:   :   :. .: : . .:
XP_005 SPEGARD------------LLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG
                        180       190       200       210       220

            240       250       260       270       280       290  
pF1KSD RAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTS
       .:.                                                         
XP_005 KASGVGLPGGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQ
              230       240       250       260       270       280




366 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:51:44 2016 done: Thu Nov  3 08:51:45 2016
 Total Scan time: 10.790 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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