Result of FASTA (ccds) for pF1KSDF0106
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDF0106, 366 aa
  1>>>pF1KSDF0106 366 - 366 aa - 366 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0953+/-0.000818; mu= -4.4872+/- 0.049
 mean_var=226.7463+/-45.291, 0's: 0 Z-trim(115.8): 44  B-trim: 0 in 0/51
 Lambda= 0.085173
 statistics sampled from 16353 (16396) to 16353 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.504), width:  16
 Scan time:  3.590

The best scores are:                                      opt bits E(32554)
CCDS34860.1 PDLIM2 gene_id:64236|Hs108|chr8        ( 366) 2442 312.2 4.7e-85
CCDS6032.2 PDLIM2 gene_id:64236|Hs108|chr8         ( 602) 2175 279.4 5.4e-75
CCDS34861.1 PDLIM2 gene_id:64236|Hs108|chr8        ( 278) 1660 216.0 3.1e-56


>>CCDS34860.1 PDLIM2 gene_id:64236|Hs108|chr8             (366 aa)
 initn: 2442 init1: 2442 opt: 2442  Z-score: 1640.5  bits: 312.2 E(32554): 4.7e-85
Smith-Waterman score: 2442; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366)

               10        20        30        40        50        60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD QEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAKRRDRRKTRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAKRRDRRKTRR
              310       320       330       340       350       360

             
pF1KSD PIQPSW
       ::::::
CCDS34 PIQPSW
             

>>CCDS6032.2 PDLIM2 gene_id:64236|Hs108|chr8              (602 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 1459.8  bits: 279.4 E(32554): 5.4e-75
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:251-577)

                                             10        20        30
pF1KSD                               MALTVDVAGPAPWGFRITGGRDFHTPIMVT
                                     ::::::::::::::::::::::::::::::
CCDS60 GGSRTGRAGPSGWAPPRGARSAESTDRLKGMALTVDVAGPAPWGFRITGGRDFHTPIMVT
              230       240       250       260       270       280

               40        50        60        70        80        90
pF1KSD KVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRSQATSPGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRSQATSPGQ
              290       300       310       320       330       340

              100       110       120       130       140       150
pF1KSD TNGDSSLEVLATRFQGSVRTYTESQSSLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TNGDSSLEVLATRFQGSVRTYTESQSSLRSSYSSPTSLSPRAGSPFSPPPSSSSLTGEAA
              350       360       370       380       390       400

              160       170       180       190       200       210
pF1KSD ISRSFQSLACSPGLPAADRLSYSGRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ISRSFQSLACSPGLPAADRLSYSGRPGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSE
              410       420       430       440       450       460

              220       230       240       250       260       270
pF1KSD GGSLLLDEDSEVFKMLQENREGRAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GGSLLLDEDSEVFKMLQENREGRAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSS
              470       480       490       500       510       520

              280       290       300       310       320       330
pF1KSD LPASRALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWEDA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS60 LPASRALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWVGD
              530       540       550       560       570       580

              340       350       360      
pF1KSD CAMEGMRLSLEALEGMVEGAKRRDRRKTRRPIQPSW
                                           
CCDS60 ELYCEKHARQRYSAPATLSSRA              
              590       600                

>>CCDS34861.1 PDLIM2 gene_id:64236|Hs108|chr8             (278 aa)
 initn: 1658 init1: 1658 opt: 1660  Z-score: 1123.0  bits: 216.0 E(32554): 3.1e-56
Smith-Waterman score: 1660; 93.2% identity (95.0% similar) in 279 aa overlap (1-279:1-276)

               10        20        30        40        50        60
pF1KSD MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRI
       :::::::::::::::     : .:    .. ::.  . :                     
CCDS34 SFRLLQEALEAEERGTR---LCASRRAGTATPAATPVPTVG                   
              250          260       270                           

              310       320       330       340       350       360
pF1KSD QEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEALEGMVEGAKRRDRRKTRR




366 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:51:43 2016 done: Thu Nov  3 08:51:43 2016
 Total Scan time:  3.590 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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