Result of FASTA (omim) for pF1KSDB0234
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDB0234, 1203 aa
  1>>>pF1KSDB0234 1203 - 1203 aa - 1203 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7867+/-0.000474; mu= 10.0890+/- 0.030
 mean_var=119.5162+/-23.960, 0's: 0 Z-trim(112.7): 409  B-trim: 122 in 1/51
 Lambda= 0.117317
 statistics sampled from 21265 (21686) to 21265 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.254), width:  16
 Scan time: 14.710

The best scores are:                                      opt bits E(85289)
NP_065136 (OMIM: 603581) protocadherin-9 isoform 2 (1203) 7902 1349.7       0
NP_001305301 (OMIM: 603581) protocadherin-9 isofor (1195) 7589 1296.7       0
XP_011533401 (OMIM: 603581) PREDICTED: protocadher (1054) 6564 1123.2       0
NP_001305302 (OMIM: 603581) protocadherin-9 isofor (1161) 6560 1122.5       0
XP_016876109 (OMIM: 603581) PREDICTED: protocadher (1066) 6551 1121.0       0
NP_982354 (OMIM: 603581) protocadherin-9 isoform 1 (1237) 6551 1121.0       0
XP_016876108 (OMIM: 603581) PREDICTED: protocadher (1237) 6551 1121.0       0
XP_005266465 (OMIM: 603581) PREDICTED: protocadher (1019) 6543 1119.6       0
XP_016876110 (OMIM: 603581) PREDICTED: protocadher (1019) 6543 1119.6       0
NP_001305303 (OMIM: 603581) protocadherin-9 isofor (1032) 6543 1119.6       0
XP_016884908 (OMIM: 300246) PREDICTED: protocadher (1308) 4379 753.4 2.2e-216
XP_016885570 (OMIM: 400022) PREDICTED: protocadher (1329) 4356 749.5 3.3e-215
XP_016885569 (OMIM: 400022) PREDICTED: protocadher (1329) 4356 749.5 3.3e-215
XP_016885568 (OMIM: 400022) PREDICTED: protocadher (1329) 4356 749.5 3.3e-215
NP_116755 (OMIM: 400022) protocadherin-11 Y-linked (1340) 4356 749.5 3.3e-215
NP_001161834 (OMIM: 300246) protocadherin-11 X-lin (1310) 4294 739.0 4.6e-212
XP_016884909 (OMIM: 300246) PREDICTED: protocadher (1339) 4294 739.0 4.7e-212
XP_016884911 (OMIM: 300246) PREDICTED: protocadher (1025) 3967 683.6 1.7e-195
XP_011529217 (OMIM: 300246) PREDICTED: protocadher (1054) 3967 683.6 1.7e-195
XP_011529218 (OMIM: 300246) PREDICTED: protocadher (1054) 3967 683.6 1.7e-195
NP_001161833 (OMIM: 300246) protocadherin-11 X-lin (1065) 3964 683.1 2.5e-195
XP_016884910 (OMIM: 300246) PREDICTED: protocadher (1076) 3964 683.1 2.5e-195
NP_001161835 (OMIM: 300246) protocadherin-11 X-lin (1329) 3964 683.1 3.1e-195
NP_116751 (OMIM: 300246) protocadherin-11 X-linked (1337) 3964 683.1 3.1e-195
NP_001161832 (OMIM: 300246) protocadherin-11 X-lin (1339) 3964 683.1 3.1e-195
XP_016884905 (OMIM: 300246) PREDICTED: protocadher (1345) 3964 683.1 3.1e-195
XP_011529216 (OMIM: 300246) PREDICTED: protocadher (1347) 3964 683.1 3.1e-195
NP_116750 (OMIM: 300246) protocadherin-11 X-linked (1347) 3964 683.1 3.1e-195
XP_011529215 (OMIM: 300246) PREDICTED: protocadher (1358) 3964 683.2 3.1e-195
XP_016884907 (OMIM: 300246) PREDICTED: protocadher (1366) 3964 683.2 3.1e-195
XP_011529214 (OMIM: 300246) PREDICTED: protocadher (1368) 3964 683.2 3.1e-195
XP_011529212 (OMIM: 300246) PREDICTED: protocadher (1376) 3964 683.2 3.2e-195
XP_011529213 (OMIM: 300246) PREDICTED: protocadher (1376) 3964 683.2 3.2e-195
XP_016884906 (OMIM: 300246) PREDICTED: protocadher (1376) 3964 683.2 3.2e-195
NP_001265548 (OMIM: 400022) protocadherin-11 Y-lin (1037) 3942 679.4 3.2e-194
XP_016885571 (OMIM: 400022) PREDICTED: protocadher (1037) 3942 679.4 3.2e-194
NP_116753 (OMIM: 400022) protocadherin-11 Y-linked (1037) 3942 679.4 3.2e-194
NP_116754 (OMIM: 400022) protocadherin-11 Y-linked (1048) 3942 679.4 3.3e-194
XP_016885572 (OMIM: 400022) PREDICTED: protocadher ( 956) 3795 654.5 9.3e-187
XP_016876197 (OMIM: 614449) PREDICTED: protocadher ( 951) 2086 365.2 1.1e-99
NP_073754 (OMIM: 614449) protocadherin-20 precurso ( 951) 2086 365.2 1.1e-99
XP_005248220 (OMIM: 602988) PREDICTED: protocadher (1275) 1687 297.8   3e-79
XP_016863751 (OMIM: 602988) PREDICTED: protocadher (1277) 1681 296.7 6.2e-79
XP_005248221 (OMIM: 602988) PREDICTED: protocadher (1267) 1678 296.2 8.7e-79
XP_011512145 (OMIM: 602988) PREDICTED: protocadher (1276) 1594 282.0 1.7e-74
XP_011512144 (OMIM: 602988) PREDICTED: protocadher (1296) 1510 267.8 3.2e-70
XP_016863757 (OMIM: 602988) PREDICTED: protocadher (1182) 1509 267.6 3.3e-70
XP_016863758 (OMIM: 602988) PREDICTED: protocadher (1182) 1509 267.6 3.3e-70
XP_016863752 (OMIM: 602988) PREDICTED: protocadher (1200) 1508 267.5 3.8e-70
XP_016863753 (OMIM: 602988) PREDICTED: protocadher (1200) 1508 267.5 3.8e-70


>>NP_065136 (OMIM: 603581) protocadherin-9 isoform 2 pre  (1203 aa)
 initn: 7902 init1: 7902 opt: 7902  Z-score: 7229.0  bits: 1349.7 E(85289):    0
Smith-Waterman score: 7902; 100.0% identity (100.0% similar) in 1203 aa overlap (1-1203:1-1203)

               10        20        30        40        50        60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD LPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSD
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD GPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 GPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLV
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KSD NGHTLTRAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESPKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 NGHTLTRAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESPKE
             1150      1160      1170      1180      1190      1200

          
pF1KSD HQL
       :::
NP_065 HQL
          

>>NP_001305301 (OMIM: 603581) protocadherin-9 isoform 3   (1195 aa)
 initn: 7598 init1: 6543 opt: 7589  Z-score: 6942.8  bits: 1296.7 E(85289):    0
Smith-Waterman score: 7589; 97.0% identity (98.1% similar) in 1204 aa overlap (1-1203:1-1195)

               10        20        30        40        50        60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
              910       920       930       940       950       960

              970       980       990      1000      1010          
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQ-SQRRVTF
       :::::::::::::::::::::::::::::::::::::::::::::::::::: ...  . 
NP_001 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSD
              970       980       990      1000      1010      1020

    1020      1030      1040      1050      1060      1070         
pF1KSD HLPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNS
       ..:   :.  :..:.  .:     .  ::     .:::::::::::::::::::::::::
NP_001 NIPVTPQKCPSSTGFHIQE-----NEESH----YEPQDEFYDQASPDKRTEADGNSDPNS
             1030           1040          1050      1060      1070 

    1080      1090      1100      1110      1120      1130         
pF1KSD DGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKL
            1080      1090      1100      1110      1120      1130 

    1140      1150      1160      1170      1180      1190         
pF1KSD VNGHTLTRAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNGHTLTRAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESPK
            1140      1150      1160      1170      1180      1190 

    1200   
pF1KSD EHQL
       ::::
NP_001 EHQL
           

>>XP_011533401 (OMIM: 603581) PREDICTED: protocadherin-9  (1054 aa)
 initn: 7060 init1: 6553 opt: 6564  Z-score: 6006.1  bits: 1123.2 E(85289):    0
Smith-Waterman score: 6564; 98.4% identity (99.4% similar) in 1032 aa overlap (1-1031:1-1030)

               10        20        30        40        50        60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::... . : 
XP_011 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQGKQTLIF-
              970       980       990      1000      1010          

              1030      1040      1050      1060      1070         
pF1KSD LPDGSQE-SCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNS
        :.:... .: .                                                
XP_011 -PSGAEDFQCHNVRIIFPNFPILFVMSHEYVSEKST                        
     1020      1030      1040      1050                            

>>NP_001305302 (OMIM: 603581) protocadherin-9 isoform 4   (1161 aa)
 initn: 7014 init1: 6549 opt: 6560  Z-score: 6001.7  bits: 1122.5 E(85289):    0
Smith-Waterman score: 7516; 96.5% identity (96.5% similar) in 1203 aa overlap (1-1203:1-1161)

               10        20        30        40        50        60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
NP_001 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQ--------
              970       980       990      1000      1010          

             1030      1040      1050      1060      1070      1080
pF1KSD LPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSD
                                         ::::::::::::::::::::::::::
NP_001 ----------------------------------PQDEFYDQASPDKRTEADGNSDPNSD
                                             1020      1030        

             1090      1100      1110      1120      1130      1140
pF1KSD GPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLV
     1040      1050      1060      1070      1080      1090        

             1150      1160      1170      1180      1190      1200
pF1KSD NGHTLTRAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESPKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGHTLTRAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESPKE
     1100      1110      1120      1130      1140      1150        

          
pF1KSD HQL
       :::
NP_001 HQL
     1160 

>>XP_016876109 (OMIM: 603581) PREDICTED: protocadherin-9  (1066 aa)
 initn: 6543 init1: 6543 opt: 6551  Z-score: 5994.1  bits: 1121.0 E(85289):    0
Smith-Waterman score: 6551; 97.9% identity (98.9% similar) in 1039 aa overlap (1-1038:1-1039)

               10        20        30        40        50        60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
              910       920       930       940       950       960

              970       980       990      1000      1010          
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQ-SQRRVTF
       :::::::::::::::::::::::::::::::::::::::::::::::::::: ...  . 
XP_016 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSD
              970       980       990      1000      1010      1020

    1020      1030      1040      1050      1060      1070         
pF1KSD HLPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNS
       ..:   :.  :..:.  .:                                         
XP_016 NIPVTPQKCPSSTGFHIQENEESHYEILQSKGVYSYQHVTIKCKQC              
             1030      1040      1050      1060                    

>>NP_982354 (OMIM: 603581) protocadherin-9 isoform 1 pre  (1237 aa)
 initn: 6543 init1: 6543 opt: 6551  Z-score: 5993.0  bits: 1121.0 E(85289):    0
Smith-Waterman score: 7812; 97.2% identity (97.2% similar) in 1235 aa overlap (1-1201:1-1235)

               10        20        30        40        50        60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
              910       920       930       940       950       960

              970       980       990      1000      1010          
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQ--------
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
NP_982 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSD
              970       980       990      1000      1010      1020

                                     1020      1030      1040      
pF1KSD --------------------------SQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
                                 ::::::::::::::::::::::::::::::::::
NP_982 NIPVTPQKCPSSTGFHIQENEESHYESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
             1030      1040      1050      1060      1070      1080

       1050      1060      1070      1080      1090      1100      
pF1KSD SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
             1090      1100      1110      1120      1130      1140

       1110      1120      1130      1140      1150      1160      
pF1KSD NCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 NCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYGS
             1150      1160      1170      1180      1190      1200

       1170      1180      1190      1200   
pF1KSD NEGHFNNGSHMTDIPLANLKSYKQAGGATESPKEHQL
       :::::::::::::::::::::::::::::::::::  
NP_982 NEGHFNNGSHMTDIPLANLKSYKQAGGATESPKEHQL
             1210      1220      1230       

>>XP_016876108 (OMIM: 603581) PREDICTED: protocadherin-9  (1237 aa)
 initn: 6543 init1: 6543 opt: 6551  Z-score: 5993.0  bits: 1121.0 E(85289):    0
Smith-Waterman score: 7812; 97.2% identity (97.2% similar) in 1235 aa overlap (1-1201:1-1235)

               10        20        30        40        50        60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
              910       920       930       940       950       960

              970       980       990      1000      1010          
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQ--------
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
XP_016 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSD
              970       980       990      1000      1010      1020

                                     1020      1030      1040      
pF1KSD --------------------------SQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
                                 ::::::::::::::::::::::::::::::::::
XP_016 NIPVTPQKCPSSTGFHIQENEESHYESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
             1030      1040      1050      1060      1070      1080

       1050      1060      1070      1080      1090      1100      
pF1KSD SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
             1090      1100      1110      1120      1130      1140

       1110      1120      1130      1140      1150      1160      
pF1KSD NCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYGS
             1150      1160      1170      1180      1190      1200

       1170      1180      1190      1200   
pF1KSD NEGHFNNGSHMTDIPLANLKSYKQAGGATESPKEHQL
       :::::::::::::::::::::::::::::::::::  
XP_016 NEGHFNNGSHMTDIPLANLKSYKQAGGATESPKEHQL
             1210      1220      1230       

>>XP_005266465 (OMIM: 603581) PREDICTED: protocadherin-9  (1019 aa)
 initn: 6543 init1: 6543 opt: 6543  Z-score: 5987.1  bits: 1119.6 E(85289):    0
Smith-Waterman score: 6543; 100.0% identity (100.0% similar) in 1012 aa overlap (1-1012:1-1012)

               10        20        30        40        50        60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
XP_005 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQFPSNGKR 
              970       980       990      1000      1010          

             1030      1040      1050      1060      1070      1080
pF1KSD LPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSD

>>XP_016876110 (OMIM: 603581) PREDICTED: protocadherin-9  (1019 aa)
 initn: 6543 init1: 6543 opt: 6543  Z-score: 5987.1  bits: 1119.6 E(85289):    0
Smith-Waterman score: 6543; 100.0% identity (100.0% similar) in 1012 aa overlap (1-1012:1-1012)

               10        20        30        40        50        60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
XP_016 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQFPSNGKR 
              970       980       990      1000      1010          

             1030      1040      1050      1060      1070      1080
pF1KSD LPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSD

>>NP_001305303 (OMIM: 603581) protocadherin-9 isoform 5   (1032 aa)
 initn: 6543 init1: 6543 opt: 6543  Z-score: 5987.0  bits: 1119.6 E(85289):    0
Smith-Waterman score: 6543; 100.0% identity (100.0% similar) in 1012 aa overlap (1-1012:1-1012)

               10        20        30        40        50        60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
NP_001 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQVNEHFYWS
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD LPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSD
                                                                   
NP_001 ISTAYKCPVNQY                                                
             1030                                                  




1203 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:31:33 2016 done: Thu Nov  3 08:31:35 2016
 Total Scan time: 14.710 Total Display time:  0.510

Function used was FASTA [36.3.4 Apr, 2011]
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