Result of FASTA (ccds) for pF1KSDA1994
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1994, 1073 aa
  1>>>pF1KSDA1994 1073 - 1073 aa - 1073 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.4050+/-0.00111; mu= -8.3442+/- 0.067
 mean_var=431.0705+/-89.727, 0's: 0 Z-trim(114.9): 76  B-trim: 3 in 1/53
 Lambda= 0.061773
 statistics sampled from 15406 (15473) to 15406 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.475), width:  16
 Scan time:  6.020

The best scores are:                                      opt bits E(32554)
CCDS31966.1 TSC22D1 gene_id:8848|Hs108|chr13       (1073) 6910 630.9 4.5e-180
CCDS58291.1 TSC22D1 gene_id:8848|Hs108|chr13       ( 570) 3592 335.0 2.9e-91
CCDS9392.1 TSC22D1 gene_id:8848|Hs108|chr13        ( 144)  653 72.6 7.1e-13
CCDS3149.1 TSC22D2 gene_id:9819|Hs108|chr3         ( 780)  613 69.6 3.1e-11


>>CCDS31966.1 TSC22D1 gene_id:8848|Hs108|chr13            (1073 aa)
 initn: 6910 init1: 6910 opt: 6910  Z-score: 3346.3  bits: 630.9 E(32554): 4.5e-180
Smith-Waterman score: 6910; 99.9% identity (100.0% similar) in 1073 aa overlap (1-1073:1-1073)

               10        20        30        40        50        60
pF1KSD MHQPPESTAAAAAAADISARKMAHPAMFPRRGSGSGSASALNAAGTGVGSNATSSEDFPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MHQPPESTAAAAAAADISARKMAHPAMFPRRGSGSGSASALNAAGTGVGSNATSSEDFPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PSLLQPPPPAASSTSGPQPPPPQSLNLLSQAQLQAQPLAPGGTQMKKKSGFQITSVTPAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PSLLQPPPPAASSTSGPQPPPPQSLNLLSQAQLQAQPLAPGGTQMKKKSGFQITSVTPAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ISASISSNNSIAEDTESYDDLDESHTEDLSSSEILDVSLSRATDLGEPERSSSEETLNNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ISASISSNNSIAEDTESYDDLDESHTEDLSSSEILDVSLSRATDLGEPERSSSEETLNNF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QEAETPGAVSPNQPHLPQPHLPHLPQQNVVINGNAHPHHLHHHHQIHHGHHLQHGHHHPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QEAETPGAVSPNQPHLPQPHLPHLPQQNVVINGNAHPHHLHHHHQIHHGHHLQHGHHHPS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD HVAVASASITGGPPSSPVSRKLSTTGSSDSITPVAPTSAVSSSGSPASVMTNMRAPSTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HVAVASASITGGPPSSPVSRKLSTTGSSDSITPVAPTSAVSSSGSPASVMTNMRAPSTTG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD GIGINSVTGTSTVNNVNITAVGSFNPNVTSSILGNVNISTSNIPSAAGVSVGPGVTSGVN
       :::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS31 GIGINSVTGTSTVNNVNITAVGSFNPNVTSSMLGNVNISTSNIPSAAGVSVGPGVTSGVN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD VNILSGMGNGTISSSAAVSSVPNAAAGMTGGSVSSQQQQPTVNTSRFRVVKLDSSSEPFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VNILSGMGNGTISSSAAVSSVPNAAAGMTGGSVSSQQQQPTVNTSRFRVVKLDSSSEPFK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KGRWTCTEFYEKENAVPATEGVLINKVVETVKQNPIEVTSERESTSGSSVSSSVSTLSHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KGRWTCTEFYEKENAVPATEGVLINKVVETVKQNPIEVTSERESTSGSSVSSSVSTLSHY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD TESVGSGEMGAPTVVVQQQQQQQQQQQQQPALQGVTLQQMDFGSTGPQSIPAVSIPQSIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TESVGSGEMGAPTVVVQQQQQQQQQQQQQPALQGVTLQQMDFGSTGPQSIPAVSIPQSIS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD QSQISQVQLQSQELSYQQKQGLQPVPLQATMSAATGIQPSPVNVVGVTSALGQQPSISSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QSQISQVQLQSQELSYQQKQGLQPVPLQATMSAATGIQPSPVNVVGVTSALGQQPSISSL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AQPQLPYSQAAPPVQTPLPGAPPPQQLQYGQQQPMVSTQMAPGHVKSVTQNPASEYVQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AQPQLPYSQAAPPVQTPLPGAPPPQQLQYGQQQPMVSTQMAPGHVKSVTQNPASEYVQQQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD PILQTAMSSGQPSSAGVGAGTTVIPVAQPQGIQLPVQPTAVPAQPAGASVQPVGQAPAAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PILQTAMSSGQPSSAGVGAGTTVIPVAQPQGIQLPVQPTAVPAQPAGASVQPVGQAPAAV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD SAVPTGSQIANIGQQANIPTAVQQPSTQVPPSVIQQGAPPSSQVVPPAQTGIIHQGVQTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SAVPTGSQIANIGQQANIPTAVQQPSTQVPPSVIQQGAPPSSQVVPPAQTGIIHQGVQTS
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD APSLPQQLVIASQSSLLTVPPQPQGVEPVAQGIVSQQLPAVSSLPSASSISVTSQVSSTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 APSLPQQLVIASQSSLLTVPPQPQGVEPVAQGIVSQQLPAVSSLPSASSISVTSQVSSTG
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD PSGMPSAPTNLVPPQNIAQTPATQNGNLVQSVSQPPLIATNTNLPLAQQIPLSSTQFSAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PSGMPSAPTNLVPPQNIAQTPATQNGNLVQSVSQPPLIATNTNLPLAQQIPLSSTQFSAQ
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD SLAQAIGSQIEDARRAAEPSLVGLPQTISGDSGGMSAVSDGSSSSLAASASLFPLKVLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SLAQAIGSQIEDARRAAEPSLVGLPQTISGDSGGMSAVSDGSSSSLAASASLFPLKVLPL
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD TTPLVDGEDESSSGASVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TTPLVDGEDESSSGASVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQL
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070   
pF1KSD EQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGTTQPPAQPASQGSGPTA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGTTQPPAQPASQGSGPTA
             1030      1040      1050      1060      1070   

>>CCDS58291.1 TSC22D1 gene_id:8848|Hs108|chr13            (570 aa)
 initn: 3592 init1: 3592 opt: 3592  Z-score: 1752.0  bits: 335.0 E(32554): 2.9e-91
Smith-Waterman score: 3592; 99.8% identity (100.0% similar) in 556 aa overlap (1-556:1-556)

               10        20        30        40        50        60
pF1KSD MHQPPESTAAAAAAADISARKMAHPAMFPRRGSGSGSASALNAAGTGVGSNATSSEDFPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MHQPPESTAAAAAAADISARKMAHPAMFPRRGSGSGSASALNAAGTGVGSNATSSEDFPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PSLLQPPPPAASSTSGPQPPPPQSLNLLSQAQLQAQPLAPGGTQMKKKSGFQITSVTPAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PSLLQPPPPAASSTSGPQPPPPQSLNLLSQAQLQAQPLAPGGTQMKKKSGFQITSVTPAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ISASISSNNSIAEDTESYDDLDESHTEDLSSSEILDVSLSRATDLGEPERSSSEETLNNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ISASISSNNSIAEDTESYDDLDESHTEDLSSSEILDVSLSRATDLGEPERSSSEETLNNF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QEAETPGAVSPNQPHLPQPHLPHLPQQNVVINGNAHPHHLHHHHQIHHGHHLQHGHHHPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QEAETPGAVSPNQPHLPQPHLPHLPQQNVVINGNAHPHHLHHHHQIHHGHHLQHGHHHPS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD HVAVASASITGGPPSSPVSRKLSTTGSSDSITPVAPTSAVSSSGSPASVMTNMRAPSTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 HVAVASASITGGPPSSPVSRKLSTTGSSDSITPVAPTSAVSSSGSPASVMTNMRAPSTTG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD GIGINSVTGTSTVNNVNITAVGSFNPNVTSSILGNVNISTSNIPSAAGVSVGPGVTSGVN
       :::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS58 GIGINSVTGTSTVNNVNITAVGSFNPNVTSSMLGNVNISTSNIPSAAGVSVGPGVTSGVN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD VNILSGMGNGTISSSAAVSSVPNAAAGMTGGSVSSQQQQPTVNTSRFRVVKLDSSSEPFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VNILSGMGNGTISSSAAVSSVPNAAAGMTGGSVSSQQQQPTVNTSRFRVVKLDSSSEPFK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KGRWTCTEFYEKENAVPATEGVLINKVVETVKQNPIEVTSERESTSGSSVSSSVSTLSHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KGRWTCTEFYEKENAVPATEGVLINKVVETVKQNPIEVTSERESTSGSSVSSSVSTLSHY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD TESVGSGEMGAPTVVVQQQQQQQQQQQQQPALQGVTLQQMDFGSTGPQSIPAVSIPQSIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TESVGSGEMGAPTVVVQQQQQQQQQQQQQPALQGVTLQQMDFGSTGPQSIPAVSIPQSIS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD QSQISQVQLQSQELSYQQKQGLQPVPLQATMSAATGIQPSPVNVVGVTSALGQQPSISSL
       ::::::::::::::::                                            
CCDS58 QSQISQVQLQSQELSYLTMKVVLLIVYLCM                              
              550       560       570                              

>>CCDS9392.1 TSC22D1 gene_id:8848|Hs108|chr13             (144 aa)
 initn: 653 init1: 653 opt: 653  Z-score: 344.6  bits: 72.6 E(32554): 7.1e-13
Smith-Waterman score: 653; 99.0% identity (100.0% similar) in 105 aa overlap (969-1073:40-144)

      940       950       960       970       980       990        
pF1KSD SDGSSSSLAASASLFPLKVLPLTTPLVDGEDESSSGASVVAIDNKIEQAMDLVKSHLMYA
                                     :.::::::::::::::::::::::::::::
CCDS93 AMDLGVYQLRHFSISFLSSLLGTENASVRLDNSSSGASVVAIDNKIEQAMDLVKSHLMYA
      10        20        30        40        50        60         

     1000      1010      1020      1030      1040      1050        
pF1KSD VREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 VREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGTT
      70        80        90       100       110       120         

     1060      1070   
pF1KSD QPPAQPASQGSGPTA
       :::::::::::::::
CCDS93 QPPAQPASQGSGPTA
     130       140    

>>CCDS3149.1 TSC22D2 gene_id:9819|Hs108|chr3              (780 aa)
 initn: 794 init1: 337 opt: 613  Z-score: 315.3  bits: 69.6 E(32554): 3.1e-11
Smith-Waterman score: 1027; 32.2% identity (53.7% similar) in 1007 aa overlap (106-1071:7-775)

          80        90       100       110       120       130     
pF1KSD GPQPPPPQSLNLLSQAQLQAQPLAPGGTQMKKKSGFQITSVTPAQISASISSNNSIAEDT
                                     :::: ::::::: ::...::.      :::
CCDS31                         MSKMPAKKKSCFQITSVTTAQVATSIT------EDT
                                       10        20              30

         140       150       160          170       180       190  
pF1KSD ESYDDLDESHTEDLSSSEILDVSLSRATDLGEPE---RSSSEETLNNFQEAETPGAVSPN
       :: :: :::.:::.:: ::.::  ::::: :  :   ::::::::::  .:::::.::::
CCDS31 ESLDDPDESRTEDVSS-EIFDV--SRATDYGPEEVCERSSSEETLNNVGDAETPGTVSPN
               40         50          60        70        80       

            200       210       220       230       240       250  
pF1KSD QPHLPQPHLPHLPQQNVVINGNAHPHHLHHHHQIHHGHHLQHGHHHPSHVAVASASITGG
                       ....:           :.               .:.:.:  .::
CCDS31 ----------------LLLDG-----------QL---------------AAAAAAPANGG
                        90                                 100     

            260       270       280       290       300       310  
pF1KSD PPSSPVSRKLSTTGSSDSITPVAPTSAVSSSGSPASVMTNMRAPSTTGGIGINSVTGTST
          . :: . :..:.      .: : :......::        :.. ::           
CCDS31 ---GVVSAR-SVSGA------LASTLAAAATSAPA--------PGAPGG-----------
            110              120       130                         

            320       330       340       350       360       370  
pF1KSD VNNVNITAVGSFNPNVTSSILGNVNISTSNIPSAAGVSVGPGVTSGVNVNILSGMGNGTI
                                      :. :: :.::                   
CCDS31 -------------------------------PQLAGSSAGP-------------------
                                       140                         

            380       390       400       410        420       430 
pF1KSD SSSAAVSSVPNAAAGMTGGSVSSQQQQPTVNTSRFRVVKLD-SSSEPFKKGRWTCTEFYE
            :...:.              : ::. .:::::.::: .:.::...::::: :.::
CCDS31 -----VTAAPS--------------QPPTTCSSRFRVIKLDHGSGEPYRRGRWTCMEYYE
             150                     160       170       180       

             440       450        460       470       480       490
pF1KSD KENAVPATEGVLINKVVETVKQNP-IEVTSERESTSGSSVSSSVSTLSHYTESVGSGEMG
       ..     ... ....  . ....  .. :.::.:  :.. .: : ... .  . :  : :
CCDS31 RD-----SDSSVLTRSGDCIRHSSTFDQTAERDSGLGATGGSVVVVVASMQGAHGP-ESG
            190       200       210       220       230        240 

              500       510       520       530       540       550
pF1KSD APTVVVQQQQQQQQQQQQQPALQGVTLQQMDFGSTGPQSIPAVSIPQSISQSQISQVQLQ
       . . ..  .:   .....::.      : ..:.   ::  :   .  ...::        
CCDS31 TDSSLTAVSQLPPSEKMSQPT----PAQPQSFSVGQPQP-PPPPVGGAVAQS--------
             250       260           270        280                

              560       570       580       590       600       610
pF1KSD SQELSYQQKQGLQPVPLQATMSAATGIQPSPVNVVGVTSALGQQPSISSLAQPQLPYSQA
       :  :      .  : :.   :.::   ::. ..  : :      :.  .:::: .    .
CCDS31 SAPLPPFPGAATGPQPM---MAAAQPSQPQGAGPGGQT----LPPTNVTLAQPAM----S
      290       300          310       320           330           

              620        630       640       650       660         
pF1KSD APPVQTPLPGAPPPQQ-LQYGQQQPMVSTQMAPGHVKSVTQNPASEYVQQQPILQTAMSS
        ::   :  :::  ::  :..  ::    :. :::.  :  .  :::.::.       : 
CCDS31 LPPQPGPAVGAPAAQQPQQFAYPQP----QIPPGHLLPVQPSGQSEYLQQHVAGLQPPSP
       340       350       360           370       380       390   

     670       680          690       700       710       720      
pF1KSD GQPSSAGVGAG---TTVIPVAQPQGIQLPVQPTAVPAQPAGASVQPVGQAPAAVSAVPTG
       .::::.:..:.   ....::.  :.       ..: ::  ::: :: ..: :  ..   :
CCDS31 AQPSSTGAAASPATAATLPVGTGQNA------SSVGAQLMGASSQP-SEAMAPRTGPAQG
           400       410             420       430        440      

        730       740       750       760       770       780      
pF1KSD SQIANIGQQANIPTAVQQPSTQVPPSVIQQGAPPSSQVVPPAQTGIIHQGVQTSAPSLPQ
       .:.:        :    :: : :::...  :.     :: :   :    :   :.:  : 
CCDS31 GQVA--------PC---QP-TGVPPATV--GG-----VVQPC-LGPAGAGQPQSVP--PP
        450                   460               470       480      

        790       800       810       820       830       840      
pF1KSD QLVIASQSSLLTVPPQPQGVEPVAQGIVSQQLPAVSSLPSASSISVTSQVSSTGPSGMPS
       :.  .... : .::  :..: :   :.   ..::.   ::. :.:.:: .       ::.
CCDS31 QM--GGSGPLSAVPGGPHAVVP---GV--PNVPAAVPAPSVPSVSTTSVT-------MPN
            490       500            510       520              530

        850        860       870       880       890        900    
pF1KSD APTNLVPPQNIA-QTPATQNGNLVQSVSQPPLIATNTNLPLAQQIPLSS-TQFSAQSLAQ
       .:. :.  :... .::........: :. : :   . . : .  .: :. .::..:.  :
CCDS31 VPAPLAQSQQLSSHTPVSRSSSIIQHVGLP-LAPGTHSAPTS--LPQSDLSQFQTQT--Q
              540       550       560        570         580       

          910       920        930       940       950             
pF1KSD AIGSQIEDARRAAEPSLVGLPQT-ISGDSGGMSAVSDGSSSSLAASASLFPLK-----VL
        . .:..:.:: .::    :::  .:  . .  .:.   ..:::   .: :..     :.
CCDS31 PLVGQVDDTRRKSEP----LPQPPLSLIAENKPVVKPPVADSLANPLQLTPMNSLATSVF
         590       600           610       620       630       640 

      960       970                               980       990    
pF1KSD PLTTPLVDGEDE------------------------SSSGASVVAIDNKIEQAMDLVKSH
        .. : :::...                        :.::..::::::::::::::::::
CCDS31 SIAIP-VDGDEDRNPSTAFYQAFHLNTLKESKSLWDSASGGGVVAIDNKIEQAMDLVKSH
              650       660       670       680       690       700

         1000      1010      1020      1030      1040      1050    
pF1KSD LMYAVREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQP
       :::::::::::::::::::.:.:: ::.:: :::.:.: .::.:. .  : ..: .:.: 
CCDS31 LMYAVREEVEVLKEQIKELVERNSLLERENALLKSLSSNDQLSQLPT--QQANPGSTSQQ
              710       720       730       740         750        

         1060      1070      
pF1KSD QGTTQPPAQPASQGSGPTA   
       :..   : ::..  . :     
CCDS31 QAVIAQPPQPTQPPQQPNVSSA
      760       770       780




1073 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:57:13 2016 done: Thu Nov  3 07:57:14 2016
 Total Scan time:  6.020 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
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