Result of FASTA (ccds) for pF1KSDA1882
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1882, 1148 aa
  1>>>pF1KSDA1882 1148 - 1148 aa - 1148 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9150+/-0.000947; mu= 18.8686+/- 0.057
 mean_var=70.1530+/-13.774, 0's: 0 Z-trim(104.7): 21  B-trim: 0 in 0/50
 Lambda= 0.153127
 statistics sampled from 8052 (8056) to 8052 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.247), width:  16
 Scan time:  3.830

The best scores are:                                      opt bits E(32554)
CCDS55278.1 TRAPPC9 gene_id:83696|Hs108|chr8       (1148) 7665 1703.1       0
CCDS34946.1 TRAPPC9 gene_id:83696|Hs108|chr8       (1246) 7665 1703.1       0


>>CCDS55278.1 TRAPPC9 gene_id:83696|Hs108|chr8            (1148 aa)
 initn: 7665 init1: 7665 opt: 7665  Z-score: 9140.0  bits: 1703.1 E(32554):    0
Smith-Waterman score: 7665; 100.0% identity (100.0% similar) in 1148 aa overlap (1-1148:1-1148)

               10        20        30        40        50        60
pF1KSD MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH
             1090      1100      1110      1120      1130      1140

               
pF1KSD VCALEAQA
       ::::::::
CCDS55 VCALEAQA
               

>>CCDS34946.1 TRAPPC9 gene_id:83696|Hs108|chr8            (1246 aa)
 initn: 7665 init1: 7665 opt: 7665  Z-score: 9139.5  bits: 1703.1 E(32554):    0
Smith-Waterman score: 7665; 100.0% identity (100.0% similar) in 1148 aa overlap (1-1148:99-1246)

                                             10        20        30
pF1KSD                               MSVPDYMQCAEDHQTLLVVVQPVGIVSEEN
                                     ::::::::::::::::::::::::::::::
CCDS34 PQWASAGPPPLSFTEEVKFELRALKDWDFKMSVPDYMQCAEDHQTLLVVVQPVGIVSEEN
       70        80        90       100       110       120        

               40        50        60        70        80        90
pF1KSD FFRIYKRICSVSQISVRDSQRVLYIRYRHHYPPENNEWGDFQTHRKVVGLITITDCFSAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FFRIYKRICSVSQISVRDSQRVLYIRYRHHYPPENNEWGDFQTHRKVVGLITITDCFSAK
      130       140       150       160       170       180        

              100       110       120       130       140       150
pF1KSD DWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGEIVEQPRTDVAFYPNYEDCQTVEKRIED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGEIVEQPRTDVAFYPNYEDCQTVEKRIED
      190       200       210       220       230       240        

              160       170       180       190       200       210
pF1KSD FIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVG
      250       260       270       280       290       300        

              220       230       240       250       260       270
pF1KSD DLCLQAGMLQDSLVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGTGGKSGARR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DLCLQAGMLQDSLVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGTGGKSGARR
      310       320       330       340       350       360        

              280       290       300       310       320       330
pF1KSD FQGSTLPAEAANRHRPGAQEVLIDPGALTTNGINPDTSTEIGRAKNCLSPEDIIDKYKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FQGSTLPAEAANRHRPGAQEVLIDPGALTTNGINPDTSTEIGRAKNCLSPEDIIDKYKEA
      370       380       390       400       410       420        

              340       350       360       370       380       390
pF1KSD ISYYSKYKNAGVIELEACIKAVRVLAIQKRSMEASEFLQNAVYINLRQLSEEEKIQRYSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ISYYSKYKNAGVIELEACIKAVRVLAIQKRSMEASEFLQNAVYINLRQLSEEEKIQRYSI
      430       440       450       460       470       480        

              400       410       420       430       440       450
pF1KSD LSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLSLDPKDFSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLSLDPKDFSR
      490       500       510       520       530       540        

              460       470       480       490       500       510
pF1KSD GTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVAQSLENY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVAQSLENY
      550       560       570       580       590       600        

              520       530       540       550       560       570
pF1KSD TSKCPGTMEPIALPGGLTLPPVPFTKLPIVRHVKLLNLPASLRPHKMKSLLGQNVSTKSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TSKCPGTMEPIALPGGLTLPPVPFTKLPIVRHVKLLNLPASLRPHKMKSLLGQNVSTKSP
      610       620       630       640       650       660        

              580       590       600       610       620       630
pF1KSD FIYSPIIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FIYSPIIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESL
      670       680       690       700       710       720        

              640       650       660       670       680       690
pF1KSD PAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTVEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTVEV
      730       740       750       760       770       780        

              700       710       720       730       740       750
pF1KSD IPALPRLQISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IPALPRLQISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLE
      790       800       810       820       830       840        

              760       770       780       790       800       810
pF1KSD VTSKVLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKVKLDFSCQENLLQDLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VTSKVLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKVKLDFSCQENLLQDLSD
      850       860       870       880       890       900        

              820       830       840       850       860       870
pF1KSD DGISVSGFPLSSPFRQVVRPRVEGKPVNPPESNKAGDYSHVKTLEAVLNFKYSGGPGHTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DGISVSGFPLSSPFRQVVRPRVEGKPVNPPESNKAGDYSHVKTLEAVLNFKYSGGPGHTE
      910       920       930       940       950       960        

              880       890       900       910       920       930
pF1KSD GYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTVSTRSSEALIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTVSTRSSEALIL
      970       980       990      1000      1010      1020        

              940       950       960       970       980       990
pF1KSD HAGECQRMAIQVDKFNFESFPESPGEKGQFANPKQLEEERREARGLEIHSKLGICWRIPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HAGECQRMAIQVDKFNFESFPESPGEKGQFANPKQLEEERREARGLEIHSKLGICWRIPS
     1030      1040      1050      1060      1070      1080        

             1000      1010      1020      1030      1040      1050
pF1KSD LKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDREAVAACQVGDPVRLEVRLTNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDREAVAACQVGDPVRLEVRLTNR
     1090      1100      1110      1120      1130      1140        

             1060      1070      1080      1090      1100      1110
pF1KSD SPRSVGPFALTVVPFQDHQNGVHNYDLHDTVSFVGSSTFYLDAVQPSGQSACLGALLFLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SPRSVGPFALTVVPFQDHQNGVHNYDLHDTVSFVGSSTFYLDAVQPSGQSACLGALLFLY
     1150      1160      1170      1180      1190      1200        

             1120      1130      1140        
pF1KSD TGDFFLHIRFHEDSTSKELPPSWFCLPSVHVCALEAQA
       ::::::::::::::::::::::::::::::::::::::
CCDS34 TGDFFLHIRFHEDSTSKELPPSWFCLPSVHVCALEAQA
     1210      1220      1230      1240      




1148 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:35:47 2016 done: Thu Nov  3 07:35:48 2016
 Total Scan time:  3.830 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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