Result of FASTA (omim) for pF1KSDA1709
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1709, 1025 aa
  1>>>pF1KSDA1709 1025 - 1025 aa - 1025 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7822+/-0.000413; mu= 19.9717+/- 0.026
 mean_var=92.5969+/-18.324, 0's: 0 Z-trim(112.5): 17  B-trim: 0 in 0/52
 Lambda= 0.133283
 statistics sampled from 21404 (21415) to 21404 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.251), width:  16
 Scan time: 13.430

The best scores are:                                      opt bits E(85289)
NP_078938 (OMIM: 609221) RNA cytidine acetyltransf (1025) 6677 1295.2       0
NP_001137502 (OMIM: 609221) RNA cytidine acetyltra ( 953) 6202 1203.8       0


>>NP_078938 (OMIM: 609221) RNA cytidine acetyltransferas  (1025 aa)
 initn: 6677 init1: 6677 opt: 6677  Z-score: 6937.1  bits: 1295.2 E(85289):    0
Smith-Waterman score: 6677; 100.0% identity (100.0% similar) in 1025 aa overlap (1-1025:1-1025)

               10        20        30        40        50        60
pF1KSD MHRKKVDNRIRILIENGVAERQRSLFVVVGDRGKDQVVILHHMLSKATVKARPSVLWCYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MHRKKVDNRIRILIENGVAERQRSLFVVVGDRGKDQVVILHHMLSKATVKARPSVLWCYK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KELGFSSHRKKRMRQLQKKIKNGTLNIKQDDPFELFIAATNIRYCYYNETHKILGNTFGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 KELGFSSHRKKRMRQLQKKIKNGTLNIKQDDPFELFIAATNIRYCYYNETHKILGNTFGM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD CVLQDFEALTPNLLARTVETVEGGGLVVILLRTMNSLKQLYTVTMDVHSRYRTEAHQDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 CVLQDFEALTPNLLARTVETVEGGGLVVILLRTMNSLKQLYTVTMDVHSRYRTEAHQDVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GRFNERFILSLASCKKCLVIDDQLNILPISSHVATMEALPPQTPDESLGPSDLELRELKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 GRFNERFILSLASCKKCLVIDDQLNILPISSHVATMEALPPQTPDESLGPSDLELRELKE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SLQDTQPVGVLVDCCKTLDQAKAVLKFIEGISEKTLRSTVALTAARGRGKSAALGLAIAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 SLQDTQPVGVLVDCCKTLDQAKAVLKFIEGISEKTLRSTVALTAARGRGKSAALGLAIAG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AVAFGYSNIFVTSPSPDNLHTLFEFVFKGFDALQYQEHLDYEIIQSLNPEFNKAVIRVNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 AVAFGYSNIFVTSPSPDNLHTLFEFVFKGFDALQYQEHLDYEIIQSLNPEFNKAVIRVNV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD FREHRQTIQYIHPADAVKLGQAELVVIDEAAAIPLPLVKSLLGPYLVFMASTINGYEGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 FREHRQTIQYIHPADAVKLGQAELVVIDEAAAIPLPLVKSLLGPYLVFMASTINGYEGTG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RSLSLKLIQQLRQQSAQSQVSTTAENKTTTTARLASARTLHEVSLQESIRYAPGDAVEKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 RSLSLKLIQQLRQQSAQSQVSTTAENKTTTTARLASARTLHEVSLQESIRYAPGDAVEKW
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD LNDLLCLDCLNITRIVSGCPLPEACELYYVNRDTLFCYHKASEVFLQRLMALYVASHYKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 LNDLLCLDCLNITRIVSGCPLPEACELYYVNRDTLFCYHKASEVFLQRLMALYVASHYKN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD SPNDLQMLSDAPAHHLFCLLPPVPPTQNALPEVLAVIQVCLEGEISRQSILNSLSRGKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 SPNDLQMLSDAPAHHLFCLLPPVPPTQNALPEVLAVIQVCLEGEISRQSILNSLSRGKKA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD SGDLIPWTVSEQFQDPDFGGLSGGRVVRIAVHPDYQGMGYGSRALQLLQMYYEGRFPCLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 SGDLIPWTVSEQFQDPDFGGLSGGRVVRIAVHPDYQGMGYGSRALQLLQMYYEGRFPCLE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD EKVLETPQEIHTVSSEAVSLLEEVITPRKDLPPLLLKLNERPAERLDYLGVSYGLTPRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 EKVLETPQEIHTVSSEAVSLLEEVITPRKDLPPLLLKLNERPAERLDYLGVSYGLTPRLL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD KFWKRAGFVPVYLRQTPNDLTGEHSCIMLKTLTDEDEADQGGWLAAFWKDFRRRFLALLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 KFWKRAGFVPVYLRQTPNDLTGEHSCIMLKTLTDEDEADQGGWLAAFWKDFRRRFLALLS
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD YQFSTFSPSLALNIIQNRNMGKPAQPALSREELEALFLPYDLKRLEMYSRNMVDYHLIMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 YQFSTFSPSLALNIIQNRNMGKPAQPALSREELEALFLPYDLKRLEMYSRNMVDYHLIMD
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD MIPAISRIYFLNQLGDLALSAAQSALLLGIGLQHKSVDQLEKEIELPSGQLMGLFNRIIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MIPAISRIYFLNQLGDLALSAAQSALLLGIGLQHKSVDQLEKEIELPSGQLMGLFNRIIR
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD KVVKLFNEVQEKAIEEQMVAAKDVVMEPTMKTLSDDLDEAAKEFQEKHKKEVGKLKSMDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 KVVKLFNEVQEKAIEEQMVAAKDVVMEPTMKTLSDDLDEAAKEFQEKHKKEVGKLKSMDL
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD SEYIIRGDDEEWNEVLNKAGPNASIISLKSDKKRKLEAKQEPKQSKKLKNRETKNKKDMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 SEYIIRGDDEEWNEVLNKAGPNASIISLKSDKKRKLEAKQEPKQSKKLKNRETKNKKDMK
              970       980       990      1000      1010      1020

            
pF1KSD LKRKK
       :::::
NP_078 LKRKK
            

>>NP_001137502 (OMIM: 609221) RNA cytidine acetyltransfe  (953 aa)
 initn: 6202 init1: 6202 opt: 6202  Z-score: 6444.0  bits: 1203.8 E(85289):    0
Smith-Waterman score: 6202; 100.0% identity (100.0% similar) in 953 aa overlap (73-1025:1-953)

             50        60        70        80        90       100  
pF1KSD MLSKATVKARPSVLWCYKKELGFSSHRKKRMRQLQKKIKNGTLNIKQDDPFELFIAATNI
                                     ::::::::::::::::::::::::::::::
NP_001                               MRQLQKKIKNGTLNIKQDDPFELFIAATNI
                                             10        20        30

            110       120       130       140       150       160  
pF1KSD RYCYYNETHKILGNTFGMCVLQDFEALTPNLLARTVETVEGGGLVVILLRTMNSLKQLYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYCYYNETHKILGNTFGMCVLQDFEALTPNLLARTVETVEGGGLVVILLRTMNSLKQLYT
               40        50        60        70        80        90

            170       180       190       200       210       220  
pF1KSD VTMDVHSRYRTEAHQDVVGRFNERFILSLASCKKCLVIDDQLNILPISSHVATMEALPPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTMDVHSRYRTEAHQDVVGRFNERFILSLASCKKCLVIDDQLNILPISSHVATMEALPPQ
              100       110       120       130       140       150

            230       240       250       260       270       280  
pF1KSD TPDESLGPSDLELRELKESLQDTQPVGVLVDCCKTLDQAKAVLKFIEGISEKTLRSTVAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPDESLGPSDLELRELKESLQDTQPVGVLVDCCKTLDQAKAVLKFIEGISEKTLRSTVAL
              160       170       180       190       200       210

            290       300       310       320       330       340  
pF1KSD TAARGRGKSAALGLAIAGAVAFGYSNIFVTSPSPDNLHTLFEFVFKGFDALQYQEHLDYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAARGRGKSAALGLAIAGAVAFGYSNIFVTSPSPDNLHTLFEFVFKGFDALQYQEHLDYE
              220       230       240       250       260       270

            350       360       370       380       390       400  
pF1KSD IIQSLNPEFNKAVIRVNVFREHRQTIQYIHPADAVKLGQAELVVIDEAAAIPLPLVKSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIQSLNPEFNKAVIRVNVFREHRQTIQYIHPADAVKLGQAELVVIDEAAAIPLPLVKSLL
              280       290       300       310       320       330

            410       420       430       440       450       460  
pF1KSD GPYLVFMASTINGYEGTGRSLSLKLIQQLRQQSAQSQVSTTAENKTTTTARLASARTLHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPYLVFMASTINGYEGTGRSLSLKLIQQLRQQSAQSQVSTTAENKTTTTARLASARTLHE
              340       350       360       370       380       390

            470       480       490       500       510       520  
pF1KSD VSLQESIRYAPGDAVEKWLNDLLCLDCLNITRIVSGCPLPEACELYYVNRDTLFCYHKAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSLQESIRYAPGDAVEKWLNDLLCLDCLNITRIVSGCPLPEACELYYVNRDTLFCYHKAS
              400       410       420       430       440       450

            530       540       550       560       570       580  
pF1KSD EVFLQRLMALYVASHYKNSPNDLQMLSDAPAHHLFCLLPPVPPTQNALPEVLAVIQVCLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVFLQRLMALYVASHYKNSPNDLQMLSDAPAHHLFCLLPPVPPTQNALPEVLAVIQVCLE
              460       470       480       490       500       510

            590       600       610       620       630       640  
pF1KSD GEISRQSILNSLSRGKKASGDLIPWTVSEQFQDPDFGGLSGGRVVRIAVHPDYQGMGYGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEISRQSILNSLSRGKKASGDLIPWTVSEQFQDPDFGGLSGGRVVRIAVHPDYQGMGYGS
              520       530       540       550       560       570

            650       660       670       680       690       700  
pF1KSD RALQLLQMYYEGRFPCLEEKVLETPQEIHTVSSEAVSLLEEVITPRKDLPPLLLKLNERP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RALQLLQMYYEGRFPCLEEKVLETPQEIHTVSSEAVSLLEEVITPRKDLPPLLLKLNERP
              580       590       600       610       620       630

            710       720       730       740       750       760  
pF1KSD AERLDYLGVSYGLTPRLLKFWKRAGFVPVYLRQTPNDLTGEHSCIMLKTLTDEDEADQGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AERLDYLGVSYGLTPRLLKFWKRAGFVPVYLRQTPNDLTGEHSCIMLKTLTDEDEADQGG
              640       650       660       670       680       690

            770       780       790       800       810       820  
pF1KSD WLAAFWKDFRRRFLALLSYQFSTFSPSLALNIIQNRNMGKPAQPALSREELEALFLPYDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WLAAFWKDFRRRFLALLSYQFSTFSPSLALNIIQNRNMGKPAQPALSREELEALFLPYDL
              700       710       720       730       740       750

            830       840       850       860       870       880  
pF1KSD KRLEMYSRNMVDYHLIMDMIPAISRIYFLNQLGDLALSAAQSALLLGIGLQHKSVDQLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRLEMYSRNMVDYHLIMDMIPAISRIYFLNQLGDLALSAAQSALLLGIGLQHKSVDQLEK
              760       770       780       790       800       810

            890       900       910       920       930       940  
pF1KSD EIELPSGQLMGLFNRIIRKVVKLFNEVQEKAIEEQMVAAKDVVMEPTMKTLSDDLDEAAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIELPSGQLMGLFNRIIRKVVKLFNEVQEKAIEEQMVAAKDVVMEPTMKTLSDDLDEAAK
              820       830       840       850       860       870

            950       960       970       980       990      1000  
pF1KSD EFQEKHKKEVGKLKSMDLSEYIIRGDDEEWNEVLNKAGPNASIISLKSDKKRKLEAKQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFQEKHKKEVGKLKSMDLSEYIIRGDDEEWNEVLNKAGPNASIISLKSDKKRKLEAKQEP
              880       890       900       910       920       930

           1010      1020     
pF1KSD KQSKKLKNRETKNKKDMKLKRKK
       :::::::::::::::::::::::
NP_001 KQSKKLKNRETKNKKDMKLKRKK
              940       950   




1025 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:59:53 2016 done: Thu Nov  3 06:59:55 2016
 Total Scan time: 13.430 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com