Result of FASTA (ccds) for pF1KSDA1709
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1709, 1025 aa
  1>>>pF1KSDA1709 1025 - 1025 aa - 1025 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9270+/-0.000984; mu= 18.7541+/- 0.059
 mean_var=85.0197+/-17.195, 0's: 0 Z-trim(105.4): 16  B-trim: 0 in 0/51
 Lambda= 0.139096
 statistics sampled from 8385 (8394) to 8385 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.258), width:  16
 Scan time:  4.250

The best scores are:                                      opt bits E(32554)
CCDS7889.1 NAT10 gene_id:55226|Hs108|chr11         (1025) 6669 1349.1       0
CCDS44568.1 NAT10 gene_id:55226|Hs108|chr11        ( 953) 6194 1253.7       0


>>CCDS7889.1 NAT10 gene_id:55226|Hs108|chr11              (1025 aa)
 initn: 6669 init1: 6669 opt: 6669  Z-score: 7228.4  bits: 1349.1 E(32554):    0
Smith-Waterman score: 6669; 99.9% identity (100.0% similar) in 1025 aa overlap (1-1025:1-1025)

               10        20        30        40        50        60
pF1KSD MHRKKVDNRIRILIENGVAERQRSLFVVVGDRGKDQVVILHHMLSKATVKARPSVLWCYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MHRKKVDNRIRILIENGVAERQRSLFVVVGDRGKDQVVILHHMLSKATVKARPSVLWCYK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KELGFSSHRKKRMRQLQKKIKNGTLNIKQDDPFELFIAATNIRYCYYNETHKILGNTFGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KELGFSSHRKKRMRQLQKKIKNGTLNIKQDDPFELFIAATNIRYCYYNETHKILGNTFGM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD CVLQDFEALTPNLLARTVETVEGGGLVVILLRTMNSLKQLYTVTMDVHSRYRTEAHQDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 CVLQDFEALTPNLLARTVETVEGGGLVVILLRTMNSLKQLYTVTMDVHSRYRTEAHQDVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GRFNERFILSLASCKKCLVIDDQLNILPISSHVATMEALPPQTPDESLGPSDLELRELKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GRFNERFILSLASCKKCLVIDDQLNILPISSHVATMEALPPQTPDESLGPSDLELRELKE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SLQDTQPVGVLVDCCKTLDQAKAVLKFIEGISEKTLRSTVALTAARGRGKSAALGLAIAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SLQDTQPVGVLVDCCKTLDQAKAVLKFIEGISEKTLRSTVALTAARGRGKSAALGLAIAG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AVAFGYSNIFVTSPSPDNLHTLFEFVFKGFDALQYQEHLDYEIIQSLNPEFNKAVIRVNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AVAFGYSNIFVTSPSPDNLHTLFEFVFKGFDALQYQEHLDYEIIQSLNPEFNKAVIRVNV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD FREHRQTIQYIHPADAVKLGQAELVVIDEAAAIPLPLVKSLLGPYLVFMASTINGYEGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 FREHRQTIQYIHPADAVKLGQAELVVIDEAAAIPLPLVKSLLGPYLVFMASTINGYEGTG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RSLSLKLIQQLRQQSAQSQVSTTAENKTTTTARLASARTLHEVSLQESIRYAPGDAVEKW
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS78 RSLSLKLIQQLRQQSAQSQVSTTAENKTTTTARLASARTLYEVSLQESIRYAPGDAVEKW
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD LNDLLCLDCLNITRIVSGCPLPEACELYYVNRDTLFCYHKASEVFLQRLMALYVASHYKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LNDLLCLDCLNITRIVSGCPLPEACELYYVNRDTLFCYHKASEVFLQRLMALYVASHYKN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD SPNDLQMLSDAPAHHLFCLLPPVPPTQNALPEVLAVIQVCLEGEISRQSILNSLSRGKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SPNDLQMLSDAPAHHLFCLLPPVPPTQNALPEVLAVIQVCLEGEISRQSILNSLSRGKKA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD SGDLIPWTVSEQFQDPDFGGLSGGRVVRIAVHPDYQGMGYGSRALQLLQMYYEGRFPCLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SGDLIPWTVSEQFQDPDFGGLSGGRVVRIAVHPDYQGMGYGSRALQLLQMYYEGRFPCLE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD EKVLETPQEIHTVSSEAVSLLEEVITPRKDLPPLLLKLNERPAERLDYLGVSYGLTPRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EKVLETPQEIHTVSSEAVSLLEEVITPRKDLPPLLLKLNERPAERLDYLGVSYGLTPRLL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD KFWKRAGFVPVYLRQTPNDLTGEHSCIMLKTLTDEDEADQGGWLAAFWKDFRRRFLALLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KFWKRAGFVPVYLRQTPNDLTGEHSCIMLKTLTDEDEADQGGWLAAFWKDFRRRFLALLS
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD YQFSTFSPSLALNIIQNRNMGKPAQPALSREELEALFLPYDLKRLEMYSRNMVDYHLIMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 YQFSTFSPSLALNIIQNRNMGKPAQPALSREELEALFLPYDLKRLEMYSRNMVDYHLIMD
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD MIPAISRIYFLNQLGDLALSAAQSALLLGIGLQHKSVDQLEKEIELPSGQLMGLFNRIIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MIPAISRIYFLNQLGDLALSAAQSALLLGIGLQHKSVDQLEKEIELPSGQLMGLFNRIIR
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD KVVKLFNEVQEKAIEEQMVAAKDVVMEPTMKTLSDDLDEAAKEFQEKHKKEVGKLKSMDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KVVKLFNEVQEKAIEEQMVAAKDVVMEPTMKTLSDDLDEAAKEFQEKHKKEVGKLKSMDL
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD SEYIIRGDDEEWNEVLNKAGPNASIISLKSDKKRKLEAKQEPKQSKKLKNRETKNKKDMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SEYIIRGDDEEWNEVLNKAGPNASIISLKSDKKRKLEAKQEPKQSKKLKNRETKNKKDMK
              970       980       990      1000      1010      1020

            
pF1KSD LKRKK
       :::::
CCDS78 LKRKK
            

>>CCDS44568.1 NAT10 gene_id:55226|Hs108|chr11             (953 aa)
 initn: 6194 init1: 6194 opt: 6194  Z-score: 6713.7  bits: 1253.7 E(32554):    0
Smith-Waterman score: 6194; 99.9% identity (100.0% similar) in 953 aa overlap (73-1025:1-953)

             50        60        70        80        90       100  
pF1KSD MLSKATVKARPSVLWCYKKELGFSSHRKKRMRQLQKKIKNGTLNIKQDDPFELFIAATNI
                                     ::::::::::::::::::::::::::::::
CCDS44                               MRQLQKKIKNGTLNIKQDDPFELFIAATNI
                                             10        20        30

            110       120       130       140       150       160  
pF1KSD RYCYYNETHKILGNTFGMCVLQDFEALTPNLLARTVETVEGGGLVVILLRTMNSLKQLYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RYCYYNETHKILGNTFGMCVLQDFEALTPNLLARTVETVEGGGLVVILLRTMNSLKQLYT
               40        50        60        70        80        90

            170       180       190       200       210       220  
pF1KSD VTMDVHSRYRTEAHQDVVGRFNERFILSLASCKKCLVIDDQLNILPISSHVATMEALPPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VTMDVHSRYRTEAHQDVVGRFNERFILSLASCKKCLVIDDQLNILPISSHVATMEALPPQ
              100       110       120       130       140       150

            230       240       250       260       270       280  
pF1KSD TPDESLGPSDLELRELKESLQDTQPVGVLVDCCKTLDQAKAVLKFIEGISEKTLRSTVAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TPDESLGPSDLELRELKESLQDTQPVGVLVDCCKTLDQAKAVLKFIEGISEKTLRSTVAL
              160       170       180       190       200       210

            290       300       310       320       330       340  
pF1KSD TAARGRGKSAALGLAIAGAVAFGYSNIFVTSPSPDNLHTLFEFVFKGFDALQYQEHLDYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TAARGRGKSAALGLAIAGAVAFGYSNIFVTSPSPDNLHTLFEFVFKGFDALQYQEHLDYE
              220       230       240       250       260       270

            350       360       370       380       390       400  
pF1KSD IIQSLNPEFNKAVIRVNVFREHRQTIQYIHPADAVKLGQAELVVIDEAAAIPLPLVKSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IIQSLNPEFNKAVIRVNVFREHRQTIQYIHPADAVKLGQAELVVIDEAAAIPLPLVKSLL
              280       290       300       310       320       330

            410       420       430       440       450       460  
pF1KSD GPYLVFMASTINGYEGTGRSLSLKLIQQLRQQSAQSQVSTTAENKTTTTARLASARTLHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS44 GPYLVFMASTINGYEGTGRSLSLKLIQQLRQQSAQSQVSTTAENKTTTTARLASARTLYE
              340       350       360       370       380       390

            470       480       490       500       510       520  
pF1KSD VSLQESIRYAPGDAVEKWLNDLLCLDCLNITRIVSGCPLPEACELYYVNRDTLFCYHKAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VSLQESIRYAPGDAVEKWLNDLLCLDCLNITRIVSGCPLPEACELYYVNRDTLFCYHKAS
              400       410       420       430       440       450

            530       540       550       560       570       580  
pF1KSD EVFLQRLMALYVASHYKNSPNDLQMLSDAPAHHLFCLLPPVPPTQNALPEVLAVIQVCLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EVFLQRLMALYVASHYKNSPNDLQMLSDAPAHHLFCLLPPVPPTQNALPEVLAVIQVCLE
              460       470       480       490       500       510

            590       600       610       620       630       640  
pF1KSD GEISRQSILNSLSRGKKASGDLIPWTVSEQFQDPDFGGLSGGRVVRIAVHPDYQGMGYGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GEISRQSILNSLSRGKKASGDLIPWTVSEQFQDPDFGGLSGGRVVRIAVHPDYQGMGYGS
              520       530       540       550       560       570

            650       660       670       680       690       700  
pF1KSD RALQLLQMYYEGRFPCLEEKVLETPQEIHTVSSEAVSLLEEVITPRKDLPPLLLKLNERP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RALQLLQMYYEGRFPCLEEKVLETPQEIHTVSSEAVSLLEEVITPRKDLPPLLLKLNERP
              580       590       600       610       620       630

            710       720       730       740       750       760  
pF1KSD AERLDYLGVSYGLTPRLLKFWKRAGFVPVYLRQTPNDLTGEHSCIMLKTLTDEDEADQGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AERLDYLGVSYGLTPRLLKFWKRAGFVPVYLRQTPNDLTGEHSCIMLKTLTDEDEADQGG
              640       650       660       670       680       690

            770       780       790       800       810       820  
pF1KSD WLAAFWKDFRRRFLALLSYQFSTFSPSLALNIIQNRNMGKPAQPALSREELEALFLPYDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WLAAFWKDFRRRFLALLSYQFSTFSPSLALNIIQNRNMGKPAQPALSREELEALFLPYDL
              700       710       720       730       740       750

            830       840       850       860       870       880  
pF1KSD KRLEMYSRNMVDYHLIMDMIPAISRIYFLNQLGDLALSAAQSALLLGIGLQHKSVDQLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KRLEMYSRNMVDYHLIMDMIPAISRIYFLNQLGDLALSAAQSALLLGIGLQHKSVDQLEK
              760       770       780       790       800       810

            890       900       910       920       930       940  
pF1KSD EIELPSGQLMGLFNRIIRKVVKLFNEVQEKAIEEQMVAAKDVVMEPTMKTLSDDLDEAAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EIELPSGQLMGLFNRIIRKVVKLFNEVQEKAIEEQMVAAKDVVMEPTMKTLSDDLDEAAK
              820       830       840       850       860       870

            950       960       970       980       990      1000  
pF1KSD EFQEKHKKEVGKLKSMDLSEYIIRGDDEEWNEVLNKAGPNASIISLKSDKKRKLEAKQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EFQEKHKKEVGKLKSMDLSEYIIRGDDEEWNEVLNKAGPNASIISLKSDKKRKLEAKQEP
              880       890       900       910       920       930

           1010      1020     
pF1KSD KQSKKLKNRETKNKKDMKLKRKK
       :::::::::::::::::::::::
CCDS44 KQSKKLKNRETKNKKDMKLKRKK
              940       950   




1025 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:59:52 2016 done: Thu Nov  3 06:59:52 2016
 Total Scan time:  4.250 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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