Result of FASTA (omim) for pF1KSDA1499
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1499, 617 aa
  1>>>pF1KSDA1499 617 - 617 aa - 617 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2327+/-0.000376; mu= 21.0789+/- 0.024
 mean_var=90.6310+/-18.131, 0's: 0 Z-trim(114.7): 37  B-trim: 0 in 0/53
 Lambda= 0.134721
 statistics sampled from 24621 (24640) to 24621 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.289), width:  16
 Scan time: 10.090

The best scores are:                                      opt bits E(85289)
XP_011523281 (OMIM: 606590) PREDICTED: nuclear pro ( 617) 4214 829.6       0
NP_060391 (OMIM: 606590) nuclear protein localizat ( 608) 3773 743.9 3.8e-214
XP_011523283 (OMIM: 606590) PREDICTED: nuclear pro ( 613) 3753 740.0 5.7e-213
XP_011523282 (OMIM: 606590) PREDICTED: nuclear pro ( 616) 3741 737.6 2.9e-212
XP_011523284 (OMIM: 606590) PREDICTED: nuclear pro ( 576) 3740 737.4 3.1e-212
XP_016880319 (OMIM: 606590) PREDICTED: nuclear pro ( 390) 2200 437.9  3e-122


>>XP_011523281 (OMIM: 606590) PREDICTED: nuclear protein  (617 aa)
 initn: 4214 init1: 4214 opt: 4214  Z-score: 4428.7  bits: 829.6 E(85289):    0
Smith-Waterman score: 4214; 100.0% identity (100.0% similar) in 617 aa overlap (1-617:1-617)

               10        20        30        40        50        60
pF1KSD MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD GHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD ETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD QTWKRSEQWATIEQLCSEYPHPLPRHPVAGAGEQPTLHSSPLPVVPWIPHPAASWQVPSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QTWKRSEQWATIEQLCSEYPHPLPRHPVAGAGEQPTLHSSPLPVVPWIPHPAASWQVPSA
              550       560       570       580       590       600

              610       
pF1KSD MQRVETRPPCQARGRLR
       :::::::::::::::::
XP_011 MQRVETRPPCQARGRLR
              610       

>>NP_060391 (OMIM: 606590) nuclear protein localization   (608 aa)
 initn: 3772 init1: 3772 opt: 3773  Z-score: 3965.5  bits: 743.9 E(85289): 3.8e-214
Smith-Waterman score: 3773; 97.9% identity (98.4% similar) in 573 aa overlap (1-572:1-573)

               10        20        30        40        50        60
pF1KSD MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD GHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD ETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELA
              490       500       510       520       530       540

              550       560        570       580       590         
pF1KSD QTWKRSEQWATIEQLCSEYPHPLPR-HPVAGAGEQPTLHSSPLPVVPWIPHPAASWQVPS
       :::::::::::::::::     ::  :  ...:                           
NP_060 QTWKRSEQWATIEQLCSTVGGQLPGLHEYGAVGGSTHTATAAMWACQHCTFMNQPGTGHC
              550       560       570       580       590       600

     600       610       
pF1KSD AMQRVETRPPCQARGRLR
                         
NP_060 EMCSLPRT          
                         

>>XP_011523283 (OMIM: 606590) PREDICTED: nuclear protein  (613 aa)
 initn: 2545 init1: 2545 opt: 3753  Z-score: 3944.5  bits: 740.0 E(85289): 5.7e-213
Smith-Waterman score: 3753; 97.1% identity (97.6% similar) in 578 aa overlap (1-572:1-578)

               10        20        30        40        50        60
pF1KSD MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
              310       320       330       340       350       360

              370            380       390       400       410     
pF1KSD GHFGSKFVTAVATG-----GPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKES
       ::::::::::::::     :::::::::::::::::::::::::::::::::::::::::
XP_011 GHFGSKFVTAVATGLSLAGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKES
              370       380       390       400       410       420

         420       430       440       450       460       470     
pF1KSD SSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIEN
              430       440       450       460       470       480

         480       490       500       510       520       530     
pF1KSD RDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTR
              490       500       510       520       530       540

         540       550       560        570       580       590    
pF1KSD NEELAQTWKRSEQWATIEQLCSEYPHPLPR-HPVAGAGEQPTLHSSPLPVVPWIPHPAAS
       ::::::::::::::::::::::     ::  :  ...:                      
XP_011 NEELAQTWKRSEQWATIEQLCSTVGGQLPGLHEYGAVGGSTHTATAAMWACQHCTFMNQP
              550       560       570       580       590       600

          600       610       
pF1KSD WQVPSAMQRVETRPPCQARGRLR
                              
XP_011 GTGHCEMCSLPRT          
              610             

>>XP_011523282 (OMIM: 606590) PREDICTED: nuclear protein  (616 aa)
 initn: 3755 init1: 2545 opt: 3741  Z-score: 3931.8  bits: 737.6 E(85289): 2.9e-212
Smith-Waterman score: 3741; 98.9% identity (99.1% similar) in 562 aa overlap (1-557:1-562)

               10        20        30        40        50        60
pF1KSD MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
              310       320       330       340       350       360

              370            380       390       400       410     
pF1KSD GHFGSKFVTAVATG-----GPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKES
       ::::::::::::::     :::::::::::::::::::::::::::::::::::::::::
XP_011 GHFGSKFVTAVATGLSLAGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKES
              370       380       390       400       410       420

         420       430       440       450       460       470     
pF1KSD SSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIEN
              430       440       450       460       470       480

         480       490       500       510       520       530     
pF1KSD RDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTR
              490       500       510       520       530       540

         540       550       560       570       580       590     
pF1KSD NEELAQTWKRSEQWATIEQLCSEYPHPLPRHPVAGAGEQPTLHSSPLPVVPWIPHPAASW
       :::::::::::::::::::::.                                      
XP_011 NEELAQTWKRSEQWATIEQLCTSRVAGITDVYHHTWRCHLYAQLAGSSQVSMSTAPSGAP
              550       560       570       580       590       600

>>XP_011523284 (OMIM: 606590) PREDICTED: nuclear protein  (576 aa)
 initn: 3754 init1: 2545 opt: 3740  Z-score: 3931.2  bits: 737.4 E(85289): 3.1e-212
Smith-Waterman score: 3740; 98.9% identity (99.1% similar) in 562 aa overlap (1-557:1-562)

               10        20        30        40        50        60
pF1KSD MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
              310       320       330       340       350       360

              370            380       390       400       410     
pF1KSD GHFGSKFVTAVATG-----GPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKES
       ::::::::::::::     :::::::::::::::::::::::::::::::::::::::::
XP_011 GHFGSKFVTAVATGLSLAGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKES
              370       380       390       400       410       420

         420       430       440       450       460       470     
pF1KSD SSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIEN
              430       440       450       460       470       480

         480       490       500       510       520       530     
pF1KSD RDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTR
              490       500       510       520       530       540

         540       550       560       570       580       590     
pF1KSD NEELAQTWKRSEQWATIEQLCSEYPHPLPRHPVAGAGEQPTLHSSPLPVVPWIPHPAASW
       :::::::::::::::::::::.                                      
XP_011 NEELAQTWKRSEQWATIEQLCNSQGTCAGLSPGYIA                        
              550       560       570                              

>>XP_016880319 (OMIM: 606590) PREDICTED: nuclear protein  (390 aa)
 initn: 2214 init1: 1224 opt: 2200  Z-score: 2315.7  bits: 437.9 E(85289): 3e-122
Smith-Waterman score: 2200; 98.2% identity (98.5% similar) in 336 aa overlap (227-557:1-336)

        200       210       220       230       240       250      
pF1KSD HLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDFWRKTGNQHFGYLYGRY
                                     ::::::::::::::::::::::::::::::
XP_016                               MFENHTVADRFLDFWRKTGNQHFGYLYGRY
                                             10        20        30

        260       270       280       290       300       310      
pF1KSD TEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIAAKLGLRKVGWIFTDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIAAKLGLRKVGWIFTDLV
               40        50        60        70        80        90

        320       330       340       350       360       370      
pF1KSD SEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPDGHFGSKFVTAVATG--
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
XP_016 SEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPDGHFGSKFVTAVATGLS
              100       110       120       130       140       150

             380       390       400       410       420       430 
pF1KSD ---GPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQYVPDVFYKDVDK
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LAGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQYVPDVFYKDVDK
              160       170       180       190       200       210

             440       450       460       470       480       490 
pF1KSD FGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLGETQDFHSLATY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLGETQDFHSLATY
              220       230       240       250       260       270

             500       510       520       530       540       550 
pF1KSD LSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELAQTWKRSEQWAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELAQTWKRSEQWAT
              280       290       300       310       320       330

             560       570       580       590       600       610 
pF1KSD IEQLCSEYPHPLPRHPVAGAGEQPTLHSSPLPVVPWIPHPAASWQVPSAMQRVETRPPCQ
       :::::.                                                      
XP_016 IEQLCTSRVAGITDVYHHTWRCHLYAQLAGSSQVSMSTAPSGAPHTRPLQPCGPVSTARS
              340       350       360       370       380       390




617 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:30:53 2016 done: Thu Nov  3 06:30:54 2016
 Total Scan time: 10.090 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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