Result of FASTA (omim) for pF1KSDA1293
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1293, 419 aa
  1>>>pF1KSDA1293 419 - 419 aa - 419 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0915+/-0.00041; mu= 18.1477+/- 0.025
 mean_var=63.5599+/-12.830, 0's: 0 Z-trim(111.5): 12  B-trim: 28 in 1/48
 Lambda= 0.160873
 statistics sampled from 20145 (20153) to 20145 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.236), width:  16
 Scan time:  8.680

The best scores are:                                      opt bits E(85289)
NP_001995 (OMIM: 134629,616631) farnesyl pyrophosp ( 419) 2841 668.4 9.5e-192
NP_001129293 (OMIM: 134629,616631) farnesyl pyroph ( 419) 2841 668.4 9.5e-192
XP_005245019 (OMIM: 134629,616631) PREDICTED: farn ( 353) 2339 551.8 9.8e-157
XP_005245020 (OMIM: 134629,616631) PREDICTED: farn ( 353) 2339 551.8 9.8e-157
NP_001229753 (OMIM: 134629,616631) farnesyl pyroph ( 353) 2339 551.8 9.8e-157
NP_001129294 (OMIM: 134629,616631) farnesyl pyroph ( 353) 2339 551.8 9.8e-157
NP_001229754 (OMIM: 134629,616631) farnesyl pyroph ( 248) 1641 389.7 4.3e-108


>>NP_001995 (OMIM: 134629,616631) farnesyl pyrophosphate  (419 aa)
 initn: 2841 init1: 2841 opt: 2841  Z-score: 3563.4  bits: 668.4 E(85289): 9.5e-192
Smith-Waterman score: 2841; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KSD MPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD MGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKE
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KSD AEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
              370       380       390       400       410         

>>NP_001129293 (OMIM: 134629,616631) farnesyl pyrophosph  (419 aa)
 initn: 2841 init1: 2841 opt: 2841  Z-score: 3563.4  bits: 668.4 E(85289): 9.5e-192
Smith-Waterman score: 2841; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KSD MPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPLSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVLAWHSARCWCQAWTEEPRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD MGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKE
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KSD AEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
              370       380       390       400       410         

>>XP_005245019 (OMIM: 134629,616631) PREDICTED: farnesyl  (353 aa)
 initn: 2339 init1: 2339 opt: 2339  Z-score: 2934.9  bits: 551.8 E(85289): 9.8e-157
Smith-Waterman score: 2339; 100.0% identity (100.0% similar) in 353 aa overlap (67-419:1-353)

         40        50        60        70        80        90      
pF1KSD HGYPVLAWHSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
                                     ::::::::::::::::::::::::::::::
XP_005                               MNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
                                             10        20        30

        100       110       120       130       140       150      
pF1KSD DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
               40        50        60        70        80        90

        160       170       180       190       200       210      
pF1KSD CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
              100       110       120       130       140       150

        220       230       240       250       260       270      
pF1KSD PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
              160       170       180       190       200       210

        280       290       300       310       320       330      
pF1KSD AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
              220       230       240       250       260       270

        340       350       360       370       380       390      
pF1KSD VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
              280       290       300       310       320       330

        400       410         
pF1KSD QYAAPLPPAVFLGLARKIYKRRK
       :::::::::::::::::::::::
XP_005 QYAAPLPPAVFLGLARKIYKRRK
              340       350   

>>XP_005245020 (OMIM: 134629,616631) PREDICTED: farnesyl  (353 aa)
 initn: 2339 init1: 2339 opt: 2339  Z-score: 2934.9  bits: 551.8 E(85289): 9.8e-157
Smith-Waterman score: 2339; 100.0% identity (100.0% similar) in 353 aa overlap (67-419:1-353)

         40        50        60        70        80        90      
pF1KSD HGYPVLAWHSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
                                     ::::::::::::::::::::::::::::::
XP_005                               MNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
                                             10        20        30

        100       110       120       130       140       150      
pF1KSD DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
               40        50        60        70        80        90

        160       170       180       190       200       210      
pF1KSD CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
              100       110       120       130       140       150

        220       230       240       250       260       270      
pF1KSD PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
              160       170       180       190       200       210

        280       290       300       310       320       330      
pF1KSD AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
              220       230       240       250       260       270

        340       350       360       370       380       390      
pF1KSD VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
              280       290       300       310       320       330

        400       410         
pF1KSD QYAAPLPPAVFLGLARKIYKRRK
       :::::::::::::::::::::::
XP_005 QYAAPLPPAVFLGLARKIYKRRK
              340       350   

>>NP_001229753 (OMIM: 134629,616631) farnesyl pyrophosph  (353 aa)
 initn: 2339 init1: 2339 opt: 2339  Z-score: 2934.9  bits: 551.8 E(85289): 9.8e-157
Smith-Waterman score: 2339; 100.0% identity (100.0% similar) in 353 aa overlap (67-419:1-353)

         40        50        60        70        80        90      
pF1KSD HGYPVLAWHSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
                                     ::::::::::::::::::::::::::::::
NP_001                               MNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
                                             10        20        30

        100       110       120       130       140       150      
pF1KSD DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
               40        50        60        70        80        90

        160       170       180       190       200       210      
pF1KSD CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
              100       110       120       130       140       150

        220       230       240       250       260       270      
pF1KSD PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
              160       170       180       190       200       210

        280       290       300       310       320       330      
pF1KSD AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
              220       230       240       250       260       270

        340       350       360       370       380       390      
pF1KSD VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
              280       290       300       310       320       330

        400       410         
pF1KSD QYAAPLPPAVFLGLARKIYKRRK
       :::::::::::::::::::::::
NP_001 QYAAPLPPAVFLGLARKIYKRRK
              340       350   

>>NP_001129294 (OMIM: 134629,616631) farnesyl pyrophosph  (353 aa)
 initn: 2339 init1: 2339 opt: 2339  Z-score: 2934.9  bits: 551.8 E(85289): 9.8e-157
Smith-Waterman score: 2339; 100.0% identity (100.0% similar) in 353 aa overlap (67-419:1-353)

         40        50        60        70        80        90      
pF1KSD HGYPVLAWHSARCWCQAWTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
                                     ::::::::::::::::::::::::::::::
NP_001                               MNGDQNSDVYAQEKQDFVQHFSQIVRVLTE
                                             10        20        30

        100       110       120       130       140       150      
pF1KSD DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW
               40        50        60        70        80        90

        160       170       180       190       200       210      
pF1KSD CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ
              100       110       120       130       140       150

        220       230       240       250       260       270      
pF1KSD PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPI
              160       170       180       190       200       210

        280       290       300       310       320       330      
pF1KSD AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWL
              220       230       240       250       260       270

        340       350       360       370       380       390      
pF1KSD VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE
              280       290       300       310       320       330

        400       410         
pF1KSD QYAAPLPPAVFLGLARKIYKRRK
       :::::::::::::::::::::::
NP_001 QYAAPLPPAVFLGLARKIYKRRK
              340       350   

>>NP_001229754 (OMIM: 134629,616631) farnesyl pyrophosph  (248 aa)
 initn: 1641 init1: 1641 opt: 1641  Z-score: 2061.6  bits: 389.7 E(85289): 4.3e-108
Smith-Waterman score: 1641; 100.0% identity (100.0% similar) in 248 aa overlap (172-419:1-248)

             150       160       170       180       190       200 
pF1KSD KQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLL
                                     ::::::::::::::::::::::::::::::
NP_001                               MDSSLTRRGQICWYQKPGVGLDAINDANLL
                                             10        20        30

             210       220       230       240       250       260 
pF1KSD EACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKS
               40        50        60        70        80        90

             270       280       290       300       310       320 
pF1KSD IVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVT
              100       110       120       130       140       150

             330       340       350       360       370       380 
pF1KSD GKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFL
              160       170       180       190       200       210

             390       400       410         
pF1KSD QYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
       ::::::::::::::::::::::::::::::::::::::
NP_001 QYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK
              220       230       240        




419 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:47:10 2016 done: Thu Nov  3 05:47:11 2016
 Total Scan time:  8.680 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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