GENSCAN 1.0	Date run:  3-Nov-116	Time: 05:32:51

Sequence gi568815592r:40291946_40533113 : 241168 bp : 47.26% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   2754   2782   29  2  2   98   76    38 0.169   2.70
 1.02 Term +  28165  28285  121  1  1   99   49    57 0.047   0.85
 1.03 PlyA +  34366  34371    6                               1.05

 2.11 PlyA -  39398  39393    6                               1.05
 2.10 Term -  40926  40811  116  1  2  101   49    99 0.924   6.03
 2.09 Intr -  47827  47582  246  2  0   39   49   127 0.070   1.33
 2.08 Intr -  48814  48774   41  0  2   53  111    51 0.133   1.77
 2.07 Intr -  51062  50956  107  2  2   92   24    63 0.186  -0.69
 2.06 Intr -  54726  54630   97  2  1   67   77    63 0.135   3.11
 2.05 Intr -  61584  61494   91  1  1   99   91     4 0.154   0.85
 2.04 Intr -  78160  78091   70  1  1   39   77    81 0.159   0.85
 2.03 Intr -  85135  85032  104  2  2  104   48    26 0.077   0.09
 2.02 Intr -  86623  86560   64  1  1    4  111    78 0.337  -0.01
 2.01 Init -  86788  86645  144  1  0   64   16   132 0.393   3.72
 2.00 Prom -  95491  95452   40                              -5.26

 3.12 PlyA -  96900  96895    6                               1.05
 3.11 Term - 100967  99998  970  1  1  112   43  1336 0.491 123.03
 3.10 Intr - 111049 110916  134  1  2  115    4    36 0.014  -2.66
 3.09 Intr - 116472 116417   56  1  2  120   24    78 0.231   3.30
 3.08 Intr - 118811 118772   40  2  1   75   90    12 0.031  -2.10
 3.07 Intr - 125403 125269  135  0  0   69   41    96 0.263   3.76
 3.06 Intr - 139662 139621   42  0  0  108  110     3 0.255   2.94
 3.05 Intr - 141186 139783 1404  0  0  140   69  2081 0.683 200.88
 3.04 Intr - 149561 149460  102  2  0  103   56    21 0.214   0.77
 3.03 Intr - 167423 167313  111  2  0   30   98   114 0.748   7.18
 3.02 Intr - 173961 173874   88  2  1  117   58     7 0.110   0.57
 3.01 Init - 176895 176837   59  0  2   93   74    20 0.142   1.88
 3.00 Prom - 177169 177130   40                             -10.84

 4.00 Prom + 177360 177399   40                              -5.56
 4.01 Init + 178263 178317   55  2  1   94   90    -1 0.448   2.15
 4.02 Intr + 180297 180355   59  1  2  110   75    19 0.615   1.40
 4.03 Intr + 185833 185880   48  0  0   89   89    66 0.790   5.68
 4.04 Intr + 191709 191813  105  2  0   97   16    63 0.460   0.41
 4.05 Intr + 193555 193690  136  0  1   65    7   122 0.670   1.94
 4.06 Intr + 195521 195617   97  0  1  101   80    72 0.910   6.77
 4.07 Term + 202698 202809  112  0  1   59   38    94 0.112  -0.47
 4.08 PlyA + 203402 203407    6                               1.05

 5.07 PlyA - 206505 206500    6                               1.05
 5.06 Term - 207684 207622   63  0  0  104   35    57 0.043  -0.11
 5.05 Intr - 211608 211477  132  0  0   57   55   123 0.130   6.74
 5.04 Intr - 225411 225359   53  1  2  103   97     6 0.239   1.63
 5.03 Intr - 226808 226690  119  1  2   73   73    21 0.072  -0.79
 5.02 Intr - 232016 231887  130  0  1  103   77    11 0.277   1.25
 5.01 Init - 234621 234525   97  0  1   93  110    41 0.328   7.27

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 217489 217395   95  1  2   70   56   127 0.814   7.55


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592r:40291946_40533113|GENSCAN_predicted_peptide_1|49_aa
MRVVSLKVHTFCFSILGGKRHSGDESGSCSEEKMAVIVECCIPGESTVL

>gi568815592r:40291946_40533113|GENSCAN_predicted_CDS_1|150_bp
atgagggtggtgtccctgaaggtgcacactttctgttttagcattttgggaggaaaaagg
cattctggtgatgaaagtgggtcctgctcggaggagaagatggctgtcattgtagagtgc
tgcatccctggggaatccacagtcctctga

>gi568815592r:40291946_40533113|GENSCAN_predicted_peptide_2|359_aa
MEFFFRERENTEVKKSRMGEYQTAAAAKPGKRLKRVLGGSRRTFPPQPARTGSSGPGKAS
VETSKTTLPGSAFSPFAFYHDWKCPEASPEAETAMYAFCTACGTDGYYQKNQSVEEDVEK
LESLYIVGNQHKRPGPGGGDAGAPTQRLYFLFAVFQARLHRKHDPVSAPGEASGSFYSWW
KMKQEQVRHMFKLVIVMLLPYHPLTFKSQLFLNKERIGLSLRHGEGKPTDDKHYVGPGAV
LHSSLAKGGLKVGKCQGYISPAYQRGSAVPGFSHLILNACLHPAWIQKPPAPHKGDNMPS
MAAASDIDTSTSTTINAVLQAGATFLNLVSETGSGSELGKQAASIMEIKKAVNGCVFIS

>gi568815592r:40291946_40533113|GENSCAN_predicted_CDS_2|1080_bp
atggaattcttcttccgtgagagagaaaatacggaggtgaagaagagcagaatgggcgag
taccagactgcagctgcagccaagccagggaagaggctaaagagggtcctcggcggctcc
cgcaggacattccctccccagccggcgaggacgggcagcagcggccctgggaaggcttcc
gtggaaacttccaaaaccaccttgccaggaagtgctttctccccctttgccttctaccat
gactggaagtgtcctgaggcctccccagaagcagaaactgctatgtatgctttctgtaca
gcctgtggaactgatggctattatcagaaaaaccaaagtgttgaagaggatgtggaaaaa
ctggaatccttgtacattgttggcaaccaacacaaaaggcctggaccaggtggtggagat
gctggggctcctacacagaggctctattttctgtttgcagtcttccaggccaggctacac
aggaagcacgacccagtatctgctcctggtgaggcctcagggagcttttactcttggtgg
aagatgaagcaggaacaggtgcgacacatgtttaagctggtaattgtcatgctgctcccg
tatcatccactgacatttaagtcccagctctttctaaataaggagcggattggcctcagc
ttgcgccatggggagggcaagcccacagatgacaagcattacgtgggaccaggagcagtt
ctgcacagttccctggcaaaaggtgggctgaaggtgggaaaatgccaagggtatatctca
cctgcttaccaacggggctctgctgtgcctggattcagccacctcatcctcaatgcctgc
cttcaccctgcctggatacagaagcccccagctccccacaagggagacaacatgccctcc
atggcagctgccagtgatatagacacctccacatccaccaccattaatgcagtcctacag
gcaggtgctacattcttaaatcttgtatcagaaactggttcaggcagtgagcttggcaaa
caagcagcttccatcatggagatcaagaaagcagtaaatggctgtgtcttcatcagttag

>gi568815592r:40291946_40533113|GENSCAN_predicted_peptide_3|1046_aa
MIPILQMKPERRRDMHEEMGLKPPFPSRNLPEGSSGKLEVTAVLLWVDSRDQGNTSSLTI
EVPLAYYSYDFSIIDFVHFVENVVAKADSLTSRPPLVKSSPPLPTQPSIKRHTRSLTSIH
ALSDQTMETLLGGLLAFGMAFAVVDACPKYCVCQNLSESLGTLCPSKGLLFVPPDIDRRT
VELRLGGNFIIHISRQDFANMTGLVDLTLSRNTISHIQPFSFLDLESLRSLHLDSNRLPS
LGEDTLRGLVNLQHLIVNNNQLGGIADEAFEDFLLTLEDLDLSYNNLHGLPWDSVRRMVN
LHQLSLDHNLLDHIAEGTFADLQKLARLDLTSNRLQKLPPDPIFARSQASALTATPFAPP
LSFSFGGNPLHCNCELLWLRRLERDDDLETCGSPGGLKGRYFWHVREEEFVCEPPLITQH
THKLLVLEGQAATLKCKAIGDPSPLIHWVAPDDRLVGNSSRTAVYDNGTLDIFITTSQDS
GAFTCIAANAAGEATAMVEVSIVQLPHLSNSTSRTAPPKSRLSDITGSSKTSRGGGGSGG
GEPPKSPPERAVLVSEVTTTSALVKWSVSKSAPRVKMYQLQYNCSDDEVSVGILGQTVPF
VQVCVDRSGGCRGTEHGDRILEAEMVAAAAAGTEHQIFLPPVKMPPRAAHLLPPGGVLLR
DLTGPPKPIDNRTKKPLPRPHRPPHCFYLKAFALAPPSCLETLPMDIHVVPSLPSEFPGA
CVPKMIPASNKAFVVNNLVSGTGYDLCVLAMWDDTATTLTATNIVGCAQFFTKADYPQCQ
SMHSQILGGTMILVIGGIIVATLLVFIVILMVRYKVCNHEAPSKMAAAVSNVYSQTNGAQ
PPPPSSAPAGAPPQGPPKVVVRNELLDFTASLARASDSSSSSSLGSGEAAGLGRAPWRIP
PSAPRPKPSLDRLMGAFASLDLKSQRKEELLDSRTPAGRGAGTSARGHHSDREPLLGPPA
ARARSLLPLPLEGKAKRSHSFDMGDFAAAAAGGVVPGGYSPPRKVSNIWTKRSLSVNGML
LPFEESDLVGARGTFGSSEWVMESTV

>gi568815592r:40291946_40533113|GENSCAN_predicted_CDS_3|3141_bp
atgattcccattttacaaatgaagccagaaaggagaagagacatgcatgaggagatgggg
ttaaagcctcccttcccctccaggaacttacctgagggcagcagtggcaagttagaggtc
actgctgttcttctctgggtggacagtagagaccaggggaacacatcgtccctcacaatt
gaagttcctctggcctattactcttatgacttctccatcatagactttgttcactttgtt
gaaaatgtggtggccaaggcagactcactcacatccaggcccccactggtgaaatccagc
cctcctttacccacacagccctccatcaagagacacacccgttcactcacctccattcat
gcgctgagtgaccagaccatggagaccctgcttggtggcctgctagcgtttggcatggcg
tttgccgtggtcgacgcctgccccaagtactgtgtctgccagaatctgtctgagtcactg
gggaccctgtgcccctccaaggggctgctctttgtaccccctgatattgaccggcggaca
gtggagctgcgcctgggcggcaacttcatcatccacatcagccgccaggactttgccaac
atgacggggctggtggacctgaccctgtccaggaacaccatcagccacatccagcccttt
tcctttctggacctcgagagcctccgctccctgcatcttgacagcaatcggctgccaagc
cttggggaggacaccctccggggcctggtcaacctgcagcaccttatcgtgaacaacaac
cagctgggcggcatcgcagatgaggcttttgaggacttcctgctgacattggaggatctg
gacctctcctacaacaacctccatggcctgccgtgggactccgtgcgacgcatggtcaac
ctccaccagctgagcctggaccacaacctgctggatcacatcgccgagggcacctttgca
gacctgcagaaactggcccgcctggatctcacctccaatcggctgcagaagctgccccct
gatcccatctttgcccgctcccaggcttcggctttgacagccacaccctttgccccaccc
ttgtcctttagttttgggggtaacccacttcactgcaattgtgagcttctctggctgcgg
aggctcgagcgggacgatgacctggaaacctgtggctccccagggggcctcaagggtcgc
tacttctggcatgtgcgtgaggaggagtttgtgtgcgagccgcctctcatcacccagcac
acacacaagttgctggttctggagggccaggcggccacactcaagtgcaaagccattggg
gaccccagcccccttatccactgggtagcccccgatgaccgcctggtagggaactcctca
aggaccgctgtctatgacaatggcaccctggacatcttcatcaccacatctcaggacagt
ggtgccttcacctgcattgctgccaatgctgccggagaggccacggccatggtggaggtc
tccatcgtccagctgccacacctcagcaacagcaccagccgcactgcaccccccaagtcc
cgcctctcagacatcactggctccagcaagaccagccggggaggtggaggcagtgggggc
ggagagcctcccaaaagccccccggaacgggctgtgcttgtgtctgaagtgaccaccacc
tcggccctggtcaagtggtctgtcagcaagtcagcaccccgggtgaagatgtaccagctg
cagtacaactgctctgacgatgaggtgtctgtggggattctggggcaaactgtgccattc
gtgcaggtgtgcgtggacaggtcgggaggctgccgaggcactgagcatggagacaggatc
ttggaagctgagatggtggcagcagcggcagccggcactgaacaccagatatttttacca
cccgtcaaaatgccaccgcgtgcggctcatcttctgccaccaggaggggtcctgctgcga
gatctgacaggaccacccaagcccatagacaatagaaccaagaagcccctgccgaggcct
caccgtcctcctcactgtttctacctcaaggcctttgcactggcacctccttcctgcctg
gaaactctgcccatggatatccacgtggttccctcacttccctcagaattcccaggagca
tgcgtcccgaagatgatcccagcctccaacaaggccttcgtggtcaacaacctggtgtca
gggactggctacgacttgtgtgtgctggccatgtgggatgacacagccacgacactcacg
gccaccaacatcgtgggctgcgcccagttcttcaccaaggctgactacccgcagtgccag
tccatgcacagccagattctgggcggcaccatgatcctggtcatcgggggcatcatcgtg
gccacgctgctggtcttcatcgtcatcctcatggtgcgctacaaggtctgcaaccacgag
gcccccagcaagatggcagcggccgtgagcaatgtgtactcgcagaccaacggcgcccag
ccaccgcctccaagcagcgcaccagccggggccccgccgcagggcccgccgaaggtggtg
gtgcgcaacgagctcctggacttcaccgccagcctggcccgcgccagtgactcctcttcc
tccagctccctgggcagtggggaggctgcggggctgggacgggccccctggaggatccca
ccctccgccccgcgccccaagcccagccttgaccgcctgatgggggccttcgcctccctg
gacctcaagagtcagagaaaggaggagctgctggactccaggactccagccgggagaggg
gctgggacgtcggcccggggccaccactcggaccgagagccactgctggggccccctgcg
gcccgggccaggagcctgctccccttgccgttggagggcaaggccaaacgcagccactcc
ttcgacatgggggactttgctgctgcggcggcgggaggggtcgtgccgggcggctacagt
cctcctcggaaggtctcgaacatctggacgaagcgcagcctctctgtcaacggcatgctc
ttgccctttgaggagagtgacctggtgggggcccgggggacttttggcagctccgaatgg
gtgatggagagcacggtctag

>gi568815592r:40291946_40533113|GENSCAN_predicted_peptide_4|203_aa
MGWVHLRKHNAHSFHTCSELDRCFQVKTIGRFHQNPQQSVLLKELQAKLFSAMVGNKGSE
VAGNEEQQFHDVGMRRGKEDYLAASRRKQLGPTPLDRDKSADNAASDKINSSNIDSKALK
CPLIEKNSLAQCPRAFLISLNGNSMEPILASLQNAHIPKKSADGKGSTKDLILLFNIPSQ
GHNLDLIIIHNTSPLKALFQAAP

>gi568815592r:40291946_40533113|GENSCAN_predicted_CDS_4|612_bp
atgggctgggtgcatctgagaaaacacaatgcccactccttccacacctgctcagagctg
gataggtgtttccaggtcaagacaattggtcgattccatcaaaacccacagcagagtgtt
ttgctgaaagagctgcaggcaaagctctttagcgccatggtgggaaacaaaggctcagaa
gtggcaggaaatgaggagcagcaattccatgatgtgggcatgagaagggggaaggaagat
tacctggcagcttccagacggaagcagctgggccccactcccctggacagagataaatca
gcagacaatgcagctagtgacaagataaactcctccaacatcgacagcaaggctctgaaa
tgccctctcatagagaagaattctctggctcagtgcccccgagccttcctcatctcacta
aatggcaactccatggagcctatccttgcatctctgcaaaatgcacacatcccgaaaaag
tcggcagatgggaaagggagcaccaaggacctcatccttctcttcaacatcccctcacaa
ggccacaatctagacctcatcatcatccataacacctcacctctgaaagctttatttcaa
gcagccccatga

>gi568815592r:40291946_40533113|GENSCAN_predicted_peptide_5|197_aa
MVEPPELQGRGENVMQVWRTGVLKTGTHSQDPDTVGWQLEEYWPWEDPALSLRLCLIISL
SLGQSTHLFVLPQRQSAWNTVGTQYVYWLNDNEWMTKCILNDLYWLKEGLCGSHQSRPGP
PPRNHTFIPHTHKDLFLDVLKVPKRYLSTIELVGFSSNGGLLAWLCVPEDRPPSAAPLGK
REKPRTHCNLKRSPAKP

>gi568815592r:40291946_40533113|GENSCAN_predicted_CDS_5|594_bp
atggtggaacccccagagctccagggcaggggagagaacgtcatgcaggtgtggagaact
ggtgtgctaaagacaggtactcattcacaagatccagacacagttggatggcaattggaa
gagtactggccctgggaagacccagctttgagcctcaggttgtgtctaatcatctctctg
tccttgggccagtcaactcacctgttcgtgctgccacagagacagagtgcttggaataca
gtaggcactcaatatgtgtattggttgaatgacaatgaatggatgactaagtgtatcctg
aatgatctgtactggctcaaggaggggttgtgtgggagccatcaatcacgacctggccct
ccacctaggaatcataccttcatcccccatactcataaggatctcttcttggatgtctta
aaagtccccaaacgctacctgtctacaatagagcttgtgggcttctccagcaatggtggt
cttcttgcatggctctgtgtcccagaggaccgccctccatcggctgcaccactggggaaa
agagagaaaccacgaacacattgcaacctgaagaggagccctgcgaagccctaa