Result of FASTA (ccds) for pF1KSDA1195
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1195, 709 aa
  1>>>pF1KSDA1195 709 - 709 aa - 709 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8400+/-0.00096; mu= 17.6346+/- 0.058
 mean_var=83.1706+/-16.413, 0's: 0 Z-trim(105.9): 25  B-trim: 41 in 1/51
 Lambda= 0.140634
 statistics sampled from 8667 (8675) to 8667 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.266), width:  16
 Scan time:  3.840

The best scores are:                                      opt bits E(32554)
CCDS33835.1 FBXO40 gene_id:51725|Hs108|chr3        ( 709) 4838 991.9       0
CCDS5208.1 FBXO30 gene_id:84085|Hs108|chr6         ( 745)  601 132.3 2.6e-30


>>CCDS33835.1 FBXO40 gene_id:51725|Hs108|chr3             (709 aa)
 initn: 4838 init1: 4838 opt: 4838  Z-score: 5303.9  bits: 991.9 E(32554):    0
Smith-Waterman score: 4838; 100.0% identity (100.0% similar) in 709 aa overlap (1-709:1-709)

               10        20        30        40        50        60
pF1KSD MGKARRSPPGHHRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGKARRSPPGHHRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EQVPCLNSEYGCPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKETP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EQVPCLNSEYGCPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKETP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SEECLDTALALQDQKVLFRSLKMVELFPETREATEEEPTMNGETSVEEMGGAVGGVDIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SEECLDTALALQDQKVLFRSLKMVELFPETREATEEEPTMNGETSVEEMGGAVGGVDIGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD VPHGLSATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENIFSKEHAASALTNSSASCES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VPHGLSATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENIFSKEHAASALTNSSASCES
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDVRTAMETTGLAPWQDGVLERLKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDVRTAMETTGLAPWQDGVLERLKT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AVDAKDYNMYLVHNGRMLIHFGQMPACTPKERDFVYGKLEAQEVKTVYTFKVPVSYCGKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AVDAKDYNMYLVHNGRMLIHFGQMPACTPKERDFVYGKLEAQEVKTVYTFKVPVSYCGKR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD ARLGDAMLSCKPSEHKAVDTSDLGITVEDLPKSDLIKTTLQCALERELKGHVISESRSID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ARLGDAMLSCKPSEHKAVDTSDLGITVEDLPKSDLIKTTLQCALERELKGHVISESRSID
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD GLFMDFATQTYNFEPEQFSSGTVLADLTAATPGGLHVELHSECVTRRHNKSSSAFTFTCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GLFMDFATQTYNFEPEQFSSGTVLADLTAATPGGLHVELHSECVTRRHNKSSSAFTFTCN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD KFFRRDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KFFRRDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQEL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD KTFAIKPEVAPELSEGRKNNHLLGHGGKSQNSLTSLPLEILKYIAGFLDSVSLAQLSQVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KTFAIKPEVAPELSEGRKNNHLLGHGGKSQNSLTSLPLEILKYIAGFLDSVSLAQLSQVS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD VLMRNICATLLQERGMVLLQWKKKRYSHGGTSWRVHREIWQFSSLFSKIKSWEFNEVTSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VLMRNICATLLQERGMVLLQWKKKRYSHGGTSWRVHREIWQFSSLFSKIKSWEFNEVTSM
              610       620       630       640       650       660

              670       680       690       700         
pF1KSD SEHLKSCPFNIVEHKTDPILLTSMCQPREQARESLVSTFRIRPRGRYVS
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SEHLKSCPFNIVEHKTDPILLTSMCQPREQARESLVSTFRIRPRGRYVS
              670       680       690       700         

>>CCDS5208.1 FBXO30 gene_id:84085|Hs108|chr6              (745 aa)
 initn: 1544 init1: 578 opt: 601  Z-score: 657.6  bits: 132.3 E(32554): 2.6e-30
Smith-Waterman score: 1462; 35.6% identity (65.4% similar) in 739 aa overlap (11-693:6-733)

               10        20        30        40        50        60
pF1KSD MGKARRSPPGHHRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPL
                 .: :: .: .:.:    ::. :: .:.: :.:::.:: ::  ::.::::.
CCDS52      MEEELQHSHCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVFHSCKADEHRLLCPF
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KSD EQVPCLNSEYGCPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKETP
       :.::::::..:::..:.:.:.:.::..::::::::.:::::::   ..   .::. ... 
CCDS52 ERVPCLNSDFGCPFTMARNKVAEHLEMCPASVVCCTMEWNRWPVSYADRKSYENLSRDVD
          60        70        80        90       100       110     

              130       140        150       160       170         
pF1KSD SEECLDTALALQDQKVLFRSLKMVELFPE-TREATEEEPTMNGETSVEEMGGAVGGVDI-
           :: :::::::..:..:::.. .. . : .... .  .. ..:: :.  : : :.. 
CCDS52 EVAQLDMALALQDQRMLLESLKVATMMSKATDKVSKPREQISVKSSVPEIPHANGLVSVD
         120       130       140       150       160       170     

          180       190           200                    210       
pF1KSD ----GLVPHGLSATNGEMAE----LSQEEREV-------------LAKTKEGMDLVKFGQ
           : . ..   :.  .:     :.   :..               ...:...  .. .
CCDS52 EESYGALYQATVETTRSLAAALDILNTATRDIGMLNTSVPNDMDEQQNARESLEDQNLKD
         180       190       200       210       220       230     

       220       230            240       250        260           
pF1KSD WENIFSKEHAASAL-----TNSSASCESKNKNDSEKEQISSGHNMVE-GEGAPKK----K
        .... .: .: .      ::..:. :.....:   .  .:...     .: : .    .
CCDS52 QDHLYEEEIGAVGGIDYNDTNQNAQSEQNGSSDLLCDLNTSSYDTSALCNGFPLENICTQ
         240       250       260       270       280       290     

       270        280        290       300        310          320 
pF1KSD EPQENQKQQ-DVRTAMETTG-LAPWQDGVLERLKT-AVDAKDYNMY---LVHNGRMLIHF
         ..::. . : . .  :.:  .  .::. .  .. :: :.  ..     . ::   .. 
CCDS52 VIDQNQNLHGDSKQSNLTNGDCVASSDGTSKPSSSLAVAAQLREIIPSSALPNGT--VQH
         300       310       320       330       340       350     

             330       340       350       360       370       380 
pF1KSD GQMPACTPKERDFVYGKLEAQEVKTVYTFKVPVSYCGKRARLGDAMLSCKPSEHKAVDTS
         ::     : .. . :..  .::.: ...   :.  .   :...  : ::.: ::::::
CCDS52 ILMPD-DEGEGELCWKKVDLGDVKNVDVLS--FSHAPSFNFLSNSCWS-KPKEDKAVDTS
            360       370       380         390        400         

                390       400       410       420       430        
pF1KSD DLGITVED---LPKSDLIKTTLQCALERELKGHVISESRSIDGLFMDFATQTYNFEPEQF
       :: .. ::   :   ::: ..:   :     :. ::.::  :   .: .:::...    .
CCDS52 DLEVA-EDPMGLQGIDLITAALLFCLGDSPGGRGISDSRMADIYHIDVGTQTFSLPSAIL
     410        420       430       440       450       460        

      440       450                     460       470       480    
pF1KSD SSGTVLADLTAAT-----------PGG---LHVELHSECVTRRHNKSSSAFTFTCNKFFR
       ...:.......:.           :.    : ..:  :::.: . :. : :::.:...::
CCDS52 ATSTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQRSMFTFVCGQLFR
      470       480       490       500       510       520        

          490       500       510       520       530       540    
pF1KSD RDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQELKTFA
       : ::  :::::: ::.. ::::...:::::: :::. : .: :  : ::.:....:..:.
CCDS52 RKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSIQGAKIIHDRHLRSFG
      530       540       550       560       570       580        

          550       560       570       580       590       600    
pF1KSD IKPEVAPELSEGRKNNHLLGHGGKSQNSLTSLPLEILKYIAGFLDSVSLAQLSQVSVLMR
       ..: :.  : :  .:  :    :  .. :.:::.:.:..::::::. :: ::: :: :::
CCDS52 VQPCVSTVLVEPARNCVL----GLHNDHLSSLPFEVLQHIAGFLDGFSLCQLSCVSKLMR
      590       600           610       620       630       640    

          610       620       630       640       650       660    
pF1KSD NICATLLQERGMVLLQWKKKRYSHGGTSWRVHREIWQFSSLFSKIKSWEFNEVTSMSEHL
       ..:..::: ::::.::: :..: .:..::......:.::. : ... :.: .. ::..::
CCDS52 DVCGSLLQSRGMVILQWGKRKYPEGNSSWQIKEKVWRFSTAFCSVNEWKFADILSMADHL
          650       660       670       680       690       700    

          670       680       690       700         
pF1KSD KSCPFNIVEHKTDPILLTSMCQPREQARESLVSTFRIRPRGRYVS
       :.: .:.::.. . : :  ::  :: ..:                
CCDS52 KKCSYNVVEKREEAIPLPCMCVTRELTKEGRSLRSVLKPVL    
          710       720       730       740         




709 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:18:34 2016 done: Thu Nov  3 05:18:35 2016
 Total Scan time:  3.840 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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