Result of FASTA (ccds) for
pF1KSDA1036
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1036, 365 aa
1>>>pF1KSDA1036 365 - 365 aa - 365 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2752+/-0.00068; mu= 14.1166+/- 0.042
mean_var=103.4338+/-20.479, 0's: 0 Z-trim(113.6): 10 B-trim: 0 in 0/51
Lambda= 0.126108
statistics sampled from 14203 (14210) to 14203 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.437), width: 16
Scan time: 3.180
The best scores are: opt bits E(32554)
CCDS9851.1 VASH1 gene_id:22846|Hs108|chr14 ( 365) 2465 458.2 5e-129
CCDS73026.1 VASH2 gene_id:79805|Hs108|chr1 ( 355) 1244 236.1 3.6e-62
CCDS44315.1 VASH2 gene_id:79805|Hs108|chr1 ( 290) 1122 213.8 1.5e-55
CCDS44316.1 VASH2 gene_id:79805|Hs108|chr1 ( 251) 998 191.2 8.2e-49
CCDS1511.1 VASH2 gene_id:79805|Hs108|chr1 ( 311) 688 134.9 9.3e-32
>>CCDS9851.1 VASH1 gene_id:22846|Hs108|chr14 (365 aa)
initn: 2465 init1: 2465 opt: 2465 Z-score: 2429.9 bits: 458.2 E(32554): 5e-129
Smith-Waterman score: 2465; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)
10 20 30 40 50 60
pF1KSD MPGGKKVAGGGSSGATPTSAAATAPSGVRRLETSEGTSAQRDEEPEEEGEEDLRDGGVPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MPGGKKVAGGGSSGATPTSAAATAPSGVRRLETSEGTSAQRDEEPEEEGEEDLRDGGVPF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FVNRGGLPVDEATWERMWKHVAKIHPDGEKVAQRIRGATDLPKIPIPSVPTFQPSTPVPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 FVNRGGLPVDEATWERMWKHVAKIHPDGEKVAQRIRGATDLPKIPIPSVPTFQPSTPVPE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RLEAVQRYIRELQYNHTGTQFFEIKKSRPLTGLMDLAKEMTKEALPIKCLEAVILGIYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 RLEAVQRYIRELQYNHTGTQFFEIKKSRPLTGLMDLAKEMTKEALPIKCLEAVILGIYLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD NSMPTLERFPISFKTYFSGNYFRHIVLGVNFAGRYGALGMSRREDLMYKPPAFRTLSELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 NSMPTLERFPISFKTYFSGNYFRHIVLGVNFAGRYGALGMSRREDLMYKPPAFRTLSELV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LDFEAAYGRCWHVLKKVKLGQSVSHDPHSVEQIEWKHSVLDVERLGRDDFRKELERHARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 LDFEAAYGRCWHVLKKVKLGQSVSHDPHSVEQIEWKHSVLDVERLGRDDFRKELERHARD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MRLKIGKGTGPPSPTKDRKKDVSSPQRAQSSPHRRNSRSERRPSGDKKTSEPKAMPDLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MRLKIGKGTGPPSPTKDRKKDVSSPQRAQSSPHRRNSRSERRPSGDKKTSEPKAMPDLNG
310 320 330 340 350 360
pF1KSD YQIRV
:::::
CCDS98 YQIRV
>>CCDS73026.1 VASH2 gene_id:79805|Hs108|chr1 (355 aa)
initn: 1284 init1: 1148 opt: 1244 Z-score: 1229.5 bits: 236.1 E(32554): 3.6e-62
Smith-Waterman score: 1244; 52.7% identity (77.5% similar) in 355 aa overlap (13-365:2-355)
10 20 30 40 50 60
pF1KSD MPGGKKVAGGGSSGATPTSAAATAPSGVRRLETSEGTSAQRDEEPEEEGEEDLRDGGVPF
.:.. . :.:.. .. . . . .::. .:::: :
CCDS73 MTGSAADTHRCPHPKGAKGTRSRSSHARPVSLATSGGSEEEDKDGGVLF
10 20 30 40
70 80 90 100 110 120
pF1KSD FVNRGGLPVDEATWERMWKHVAKIHPDGEKVAQRIRGATDLPKIPIPSVPTFQPSTPVPE
::..:.:.: :::::: ::::.:: : ... ::.:. : : ::.::... : .:.
CCDS73 HVNKSGFPIDSHTWERMWMHVAKVHPKGGEMVGAIRNAAFLAKPSIPQVPNYRLSMTIPD
50 60 70 80 90 100
130 140 150 160 170 180
pF1KSD RLEAVQRYIRELQYNHTGTQFFEIKKSRPLTGLMDLAKEMTKEALPIKCLEAVILGIYLT
:.:.: :.. :::::::::::::.: :::.:::. :::::.:.::::::::::::::::
CCDS73 WLQAIQNYMKTLQYNHTGTQFFEIRKMRPLSGLMETAKEMTRESLPIKCLEAVILGIYLT
110 120 130 140 150 160
190 200 210 220 230 240
pF1KSD NSMPTLERFPISFKTYFSGNYFRHIVLGVNFAGRYGALGMSRREDLMYKPPAFRTLSELV
:..:..::::::::::::::::.:.:::. ::::.:::::: .:: :: .:::::.:.
CCDS73 NGQPSIERFPISFKTYFSGNYFHHVVLGIYCNGRYGSLGMSRRAELMDKPLTFRTLSDLI
170 180 190 200 210 220
250 260 270 280 290 300
pF1KSD LDFEAAYGRCWHVLKKVKLGQSVSHDPHSVEQIEWKHSVLDVERLGRDDFRKELERHARD
.::: .: . :..::::.: : :.::: . ::::. ::.: .. : :.:::::..:::
CCDS73 FDFEDSYKKYLHTVKKVKIGLYVPHEPHSFQPIEWKQLVLNVSKMLRADIRKELEKYARD
230 240 250 260 270 280
310 320 330 340 350
pF1KSD MRLKIGKGTGPPSPTKDRKKDVS-SPQRAQSSPHRRNSRSERRPS-GDKKTSEPKAMPDL
::.:: : .. :::. :.. : ::.: :.:: :: .: :. :. .::... ... ..
CCDS73 MRMKILKPASAHSPTQVRSRGKSLSPRRRQASPPRRLGRREKSPALPEKKVADLSTLNEV
290 300 310 320 330 340
360
pF1KSD NGYQIRV
:::::.
CCDS73 -GYQIRI
350
>>CCDS44315.1 VASH2 gene_id:79805|Hs108|chr1 (290 aa)
initn: 1182 init1: 1027 opt: 1122 Z-score: 1110.8 bits: 213.8 E(32554): 1.5e-55
Smith-Waterman score: 1122; 57.7% identity (81.4% similar) in 291 aa overlap (77-365:1-290)
50 60 70 80 90 100
pF1KSD EEGEEDLRDGGVPFFVNRGGLPVDEATWERMWKHVAKIHPDGEKVAQRIRGATDLPKIPI
:: ::::.:: : ... ::.:. : : :
CCDS44 MWMHVAKVHPKGGEMVGAIRNAAFLAKPSI
10 20 30
110 120 130 140 150 160
pF1KSD PSVPTFQPSTPVPERLEAVQRYIRELQYNHTGTQFFEIKKSRPLTGLMDLAKEMTKEALP
:.::... : .:. :.:.: :.. :::::::::::::.: :::.:::. :::::.:.::
CCDS44 PQVPNYRLSMTIPDWLQAIQNYMKTLQYNHTGTQFFEIRKMRPLSGLMETAKEMTRESLP
40 50 60 70 80 90
170 180 190 200 210 220
pF1KSD IKCLEAVILGIYLTNSMPTLERFPISFKTYFSGNYFRHIVLGVNFAGRYGALGMSRREDL
:::::::::::::::..:..::::::::::::::::.:.:::. ::::.:::::: .:
CCDS44 IKCLEAVILGIYLTNGQPSIERFPISFKTYFSGNYFHHVVLGIYCNGRYGSLGMSRRAEL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KSD MYKPPAFRTLSELVLDFEAAYGRCWHVLKKVKLGQSVSHDPHSVEQIEWKHSVLDVERLG
: :: .:::::.:..::: .: . :..::::.: : :.::: . ::::. ::.: ..
CCDS44 MDKPLTFRTLSDLIFDFEDSYKKYLHTVKKVKIGLYVPHEPHSFQPIEWKQLVLNVSKML
160 170 180 190 200 210
290 300 310 320 330 340
pF1KSD RDDFRKELERHARDMRLKIGKGTGPPSPTKDRKKDVS-SPQRAQSSPHRRNSRSERRPS-
: :.:::::..:::::.:: : .. :::. :.. : ::.: :.:: :: .: :. :.
CCDS44 RADIRKELEKYARDMRMKILKPASAHSPTQVRSRGKSLSPRRRQASPPRRLGRREKSPAL
220 230 240 250 260 270
350 360
pF1KSD GDKKTSEPKAMPDLNGYQIRV
.::... ... .. :::::.
CCDS44 PEKKVADLSTLNEV-GYQIRI
280 290
>>CCDS44316.1 VASH2 gene_id:79805|Hs108|chr1 (251 aa)
initn: 992 init1: 856 opt: 998 Z-score: 989.8 bits: 191.2 E(32554): 8.2e-49
Smith-Waterman score: 998; 59.6% identity (83.2% similar) in 250 aa overlap (118-365:3-251)
90 100 110 120 130 140
pF1KSD GEKVAQRIRGATDLPKIPIPSVPTFQPSTPVPERLEAVQRYIRELQYNHTGTQFFEIKKS
.:. :.:.: :.. :::::::::::::.:
CCDS44 MTIPDWLQAIQNYMKTLQYNHTGTQFFEIRKM
10 20 30
150 160 170 180 190 200
pF1KSD RPLTGLMDLAKEMTKEALPIKCLEAVILGIYLTNSMPTLERFPISFKTYFSGNYFRHIVL
:::.:::. :::::.:.:::::::::::::::::..:..::::::::::::::::.:.::
CCDS44 RPLSGLMETAKEMTRESLPIKCLEAVILGIYLTNGQPSIERFPISFKTYFSGNYFHHVVL
40 50 60 70 80 90
210 220 230 240 250 260
pF1KSD GVNFAGRYGALGMSRREDLMYKPPAFRTLSELVLDFEAAYGRCWHVLKKVKLGQSVSHDP
:. ::::.:::::: .:: :: .:::::.:..::: .: . :..::::.: : :.:
CCDS44 GIYCNGRYGSLGMSRRAELMDKPLTFRTLSDLIFDFEDSYKKYLHTVKKVKIGLYVPHEP
100 110 120 130 140 150
270 280 290 300 310 320
pF1KSD HSVEQIEWKHSVLDVERLGRDDFRKELERHARDMRLKIGKGTGPPSPTKDRKKDVS-SPQ
:: . ::::. ::.: .. : :.:::::..:::::.:: : .. :::. :.. : ::.
CCDS44 HSFQPIEWKQLVLNVSKMLRADIRKELEKYARDMRMKILKPASAHSPTQVRSRGKSLSPR
160 170 180 190 200 210
330 340 350 360
pF1KSD RAQSSPHRRNSRSERRPS-GDKKTSEPKAMPDLNGYQIRV
: :.:: :: .: :. :. .::... ... .. :::::.
CCDS44 RRQASPPRRLGRREKSPALPEKKVADLSTLNEV-GYQIRI
220 230 240 250
>>CCDS1511.1 VASH2 gene_id:79805|Hs108|chr1 (311 aa)
initn: 1003 init1: 593 opt: 688 Z-score: 683.7 bits: 134.9 E(32554): 9.3e-32
Smith-Waterman score: 889; 42.0% identity (65.6% similar) in 355 aa overlap (13-365:2-311)
10 20 30 40 50 60
pF1KSD MPGGKKVAGGGSSGATPTSAAATAPSGVRRLETSEGTSAQRDEEPEEEGEEDLRDGGVPF
.:.. . :.:.. .. . . . .::. .:::: :
CCDS15 MTGSAADTHRCPHPKGAKGTRSRSSHARPVSLATSGGSEEEDKDGGVLF
10 20 30 40
70 80 90 100 110 120
pF1KSD FVNRGGLPVDEATWERMWKHVAKIHPDGEKVAQRIRGATDLPKIPIPSVPTFQPSTPVPE
::..:.:.: :::::: ::::.:: : ... ::.:. : : ::.::... : .:.
CCDS15 HVNKSGFPIDSHTWERMWMHVAKVHPKGGEMVGAIRNAAFLAKPSIPQVPNYRLSMTIPD
50 60 70 80 90 100
130 140 150 160 170 180
pF1KSD RLEAVQRYIRELQYNHTGTQFFEIKKSRPLTGLMDLAKEMTKEALPIKCLEAVILGIYLT
:.:.: :.. :.: ::
CCDS15 WLQAIQNYMKTLHY--------------------------------------------LT
110 120
190 200 210 220 230 240
pF1KSD NSMPTLERFPISFKTYFSGNYFRHIVLGVNFAGRYGALGMSRREDLMYKPPAFRTLSELV
:..:..::::::::::::::::.:.:::. ::::.:::::: .:: :: .:::::.:.
CCDS15 NGQPSIERFPISFKTYFSGNYFHHVVLGIYCNGRYGSLGMSRRAELMDKPLTFRTLSDLI
130 140 150 160 170 180
250 260 270 280 290 300
pF1KSD LDFEAAYGRCWHVLKKVKLGQSVSHDPHSVEQIEWKHSVLDVERLGRDDFRKELERHARD
.::: .: . :..::::.: : :.::: . ::::. ::.: .. : :.:::::..:::
CCDS15 FDFEDSYKKYLHTVKKVKIGLYVPHEPHSFQPIEWKQLVLNVSKMLRADIRKELEKYARD
190 200 210 220 230 240
310 320 330 340 350
pF1KSD MRLKIGKGTGPPSPTKDRKKDVS-SPQRAQSSPHRRNSRSERRPS-GDKKTSEPKAMPDL
::.:: : .. :::. :.. : ::.: :.:: :: .: :. :. .::... ... ..
CCDS15 MRMKILKPASAHSPTQVRSRGKSLSPRRRQASPPRRLGRREKSPALPEKKVADLSTLNEV
250 260 270 280 290 300
360
pF1KSD NGYQIRV
:::::.
CCDS15 -GYQIRI
310
365 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 04:41:48 2016 done: Thu Nov 3 04:41:49 2016
Total Scan time: 3.180 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]