Result of FASTA (omim) for pF1KSDA1014
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1014, 1017 aa
  1>>>pF1KSDA1014 1017 - 1017 aa - 1017 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.9034+/-0.000448; mu= -15.3822+/- 0.028
 mean_var=585.5475+/-119.306, 0's: 0 Z-trim(124.7): 20  B-trim: 0 in 0/62
 Lambda= 0.053002
 statistics sampled from 46790 (46824) to 46790 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.549), width:  16
 Scan time: 17.970

The best scores are:                                      opt bits E(85289)
NP_001305268 (OMIM: 615265) formin-binding protein (1019) 6721 529.4 3.8e-149
NP_056123 (OMIM: 615265) formin-binding protein 4  (1017) 6693 527.3 1.7e-148


>>NP_001305268 (OMIM: 615265) formin-binding protein 4 i  (1019 aa)
 initn: 6391 init1: 6391 opt: 6721  Z-score: 2798.7  bits: 529.4 E(85289): 3.8e-149
Smith-Waterman score: 6721; 99.8% identity (99.8% similar) in 1019 aa overlap (1-1017:1-1019)

               10        20        30        40        50          
pF1KSD MGKKSRAVPGRRPILQLSPPGPRGSTPGRDPEPEPDTEPDSTAAVPSQPAPSAATTT--A
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::  :
NP_001 MGKKSRAVPGRRPILQLSPPGPRGSTPGRDPEPEPDTEPDSTAAVPSQPAPSAATTTTTA
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KSD VTAAAASDDSPSEGKDEQEAVQEVPRVVQNPPKPVMTTRPTAVKATGGLCLLGAYADSDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTAAAASDDSPSEGKDEQEAVQEVPRVVQNPPKPVMTTRPTAVKATGGLCLLGAYADSDD
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KSD DDNDVSEKLAQSKETNGNQSTDIDSTLANFLAEIDAITAPQPAAPVGASAPPPTPPRPEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDNDVSEKLAQSKETNGNQSTDIDSTLANFLAEIDAITAPQPAAPVGASAPPPTPPRPEP
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KSD KEAATSTLSSSTSNGTDSTQTSGWQYDTQCSLAGVGIEMGDWQEVWDENTGCYYYWNTQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEAATSTLSSSTSNGTDSTQTSGWQYDTQCSLAGVGIEMGDWQEVWDENTGCYYYWNTQT
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KSD NEVTWELPQYLATQVQGLQHYQPSSVPGAETSFVVNTDIYSKEKTISVSSSKSGPVIAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NEVTWELPQYLATQVQGLQHYQPSSVPGAETSFVVNTDIYSKEKTISVSSSKSGPVIAKR
              250       260       270       280       290       300

      300       310       320       330       340       350        
pF1KSD EVKKEVNEGIQALSNSEEEKKGVAASLLAPLLPEGIKEEEERWRRKVICKEEPVSEVKET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVKKEVNEGIQALSNSEEEKKGVAASLLAPLLPEGIKEEEERWRRKVICKEEPVSEVKET
              310       320       330       340       350       360

      360       370       380       390       400       410        
pF1KSD STTVEEATTIVKPQEIMLDNIEDPSQEDLCSVVQSGESEEEEEQDTLELELVLERKKAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STTVEEATTIVKPQEIMLDNIEDPSQEDLCSVVQSGESEEEEEQDTLELELVLERKKAEL
              370       380       390       400       410       420

      420       430       440       450       460       470        
pF1KSD RALEEGDGSVSGSSPRSDISQPASQDGMRRLMSKRGKWKMFVRATSPESTSRSSSKTGRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RALEEGDGSVSGSSPRSDISQPASQDGMRRLMSKRGKWKMFVRATSPESTSRSSSKTGRD
              430       440       450       460       470       480

      480       490       500       510       520       530        
pF1KSD TPENGETAIGAENSEKIDENSDKEMEVEESPEKIKVQTTPKVEEEQDLKFQIGELANTLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPENGETAIGAENSEKIDENSDKEMEVEESPEKIKVQTTPKVEEEQDLKFQIGELANTLT
              490       500       510       520       530       540

      540       550       560       570       580       590        
pF1KSD SKFEFLGINRQSISNFHVLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKFEFLGINRQSISNFHVLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATP
              550       560       570       580       590       600

      600       610       620       630       640       650        
pF1KSD KGWSCHWDRDHRRYFYVNEQSGESQWEFPDGEEEEEESQAQENRDETLAKQTLKDKTGTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGWSCHWDRDHRRYFYVNEQSGESQWEFPDGEEEEEESQAQENRDETLAKQTLKDKTGTD
              610       620       630       640       650       660

      660       670       680       690       700       710        
pF1KSD SNSTESSETSTGSLCKESFSGQVSSSSLMPLTPFWTLLQSNVPVLQPPLPLEMPPPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNSTESSETSTGSLCKESFSGQVSSSSLMPLTPFWTLLQSNVPVLQPPLPLEMPPPPPPP
              670       680       690       700       710       720

      720       730       740       750       760       770        
pF1KSD PESPPPPPPPPPPAEDGEIQEVEMEDEGSEEPPAPGTEEDTPLKPSAQTTVVTSQSSVDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PESPPPPPPPPPPAEDGEIQEVEMEDEGSEEPPAPGTEEDTPLKPSAQTTVVTSQSSVDS
              730       740       750       760       770       780

      780       790       800       810       820       830        
pF1KSD TISSSSSTKGIKRKATEISTAVVQRSATIGSSPVLYSQSAIATGHQAAGIGNQATGIGHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TISSSSSTKGIKRKATEISTAVVQRSATIGSSPVLYSQSAIATGHQAAGIGNQATGIGHQ
              790       800       810       820       830       840

      840       850       860       870       880       890        
pF1KSD TIPVSLPAAGMGHQARGMSLQSNYLGLAAAPAIMSYAECSVPIGVTAPSLQPVQARGAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIPVSLPAAGMGHQARGMSLQSNYLGLAAAPAIMSYAECSVPIGVTAPSLQPVQARGAVP
              850       860       870       880       890       900

      900       910       920       930       940       950        
pF1KSD TATIIEPPPPPPPPPPPPPPAPKMPPPEKTKKGRKDKAKKSKTKMPSLVKKWQSIQRELD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TATIIEPPPPPPPPPPPPPPAPKMPPPEKTKKGRKDKAKKSKTKMPSLVKKWQSIQRELD
              910       920       930       940       950       960

      960       970       980       990      1000      1010       
pF1KSD EEDNSSSSEEDRESTAQKRIEEWKQQQLVSGMAERNANFEALPEDWRARLKRRKMAPNT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEDNSSSSEEDRESTAQKRIEEWKQQQLVSGMAERNANFEALPEDWRARLKRRKMAPNT
              970       980       990      1000      1010         

>>NP_056123 (OMIM: 615265) formin-binding protein 4 isof  (1017 aa)
 initn: 6652 init1: 6652 opt: 6693  Z-score: 2787.2  bits: 527.3 E(85289): 1.7e-148
Smith-Waterman score: 6693; 99.6% identity (99.6% similar) in 1019 aa overlap (1-1017:1-1017)

               10        20        30        40        50          
pF1KSD MGKKSRAVPGRRPILQLSPPGPRGSTPGRDPEPEPDTEPDSTAAVPSQPAPSAATTT--A
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::  :
NP_056 MGKKSRAVPGRRPILQLSPPGPRGSTPGRDPEPEPDTEPDSTAAVPSQPAPSAATTTTTA
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KSD VTAAAASDDSPSEGKDEQEAVQEVPRVVQNPPKPVMTTRPTAVKATGGLCLLGAYADSDD
       :::::::::::::  :::::::::::::::::::::::::::::::::::::::::::::
NP_056 VTAAAASDDSPSE--DEQEAVQEVPRVVQNPPKPVMTTRPTAVKATGGLCLLGAYADSDD
               70          80        90       100       110        

      120       130       140       150       160       170        
pF1KSD DDNDVSEKLAQSKETNGNQSTDIDSTLANFLAEIDAITAPQPAAPVGASAPPPTPPRPEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DDNDVSEKLAQSKETNGNQSTDIDSTLANFLAEIDAITAPQPAAPVGASAPPPTPPRPEP
      120       130       140       150       160       170        

      180       190       200       210       220       230        
pF1KSD KEAATSTLSSSTSNGTDSTQTSGWQYDTQCSLAGVGIEMGDWQEVWDENTGCYYYWNTQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KEAATSTLSSSTSNGTDSTQTSGWQYDTQCSLAGVGIEMGDWQEVWDENTGCYYYWNTQT
      180       190       200       210       220       230        

      240       250       260       270       280       290        
pF1KSD NEVTWELPQYLATQVQGLQHYQPSSVPGAETSFVVNTDIYSKEKTISVSSSKSGPVIAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NEVTWELPQYLATQVQGLQHYQPSSVPGAETSFVVNTDIYSKEKTISVSSSKSGPVIAKR
      240       250       260       270       280       290        

      300       310       320       330       340       350        
pF1KSD EVKKEVNEGIQALSNSEEEKKGVAASLLAPLLPEGIKEEEERWRRKVICKEEPVSEVKET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EVKKEVNEGIQALSNSEEEKKGVAASLLAPLLPEGIKEEEERWRRKVICKEEPVSEVKET
      300       310       320       330       340       350        

      360       370       380       390       400       410        
pF1KSD STTVEEATTIVKPQEIMLDNIEDPSQEDLCSVVQSGESEEEEEQDTLELELVLERKKAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 STTVEEATTIVKPQEIMLDNIEDPSQEDLCSVVQSGESEEEEEQDTLELELVLERKKAEL
      360       370       380       390       400       410        

      420       430       440       450       460       470        
pF1KSD RALEEGDGSVSGSSPRSDISQPASQDGMRRLMSKRGKWKMFVRATSPESTSRSSSKTGRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RALEEGDGSVSGSSPRSDISQPASQDGMRRLMSKRGKWKMFVRATSPESTSRSSSKTGRD
      420       430       440       450       460       470        

      480       490       500       510       520       530        
pF1KSD TPENGETAIGAENSEKIDENSDKEMEVEESPEKIKVQTTPKVEEEQDLKFQIGELANTLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TPENGETAIGAENSEKIDENSDKEMEVEESPEKIKVQTTPKVEEEQDLKFQIGELANTLT
      480       490       500       510       520       530        

      540       550       560       570       580       590        
pF1KSD SKFEFLGINRQSISNFHVLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SKFEFLGINRQSISNFHVLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATP
      540       550       560       570       580       590        

      600       610       620       630       640       650        
pF1KSD KGWSCHWDRDHRRYFYVNEQSGESQWEFPDGEEEEEESQAQENRDETLAKQTLKDKTGTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KGWSCHWDRDHRRYFYVNEQSGESQWEFPDGEEEEEESQAQENRDETLAKQTLKDKTGTD
      600       610       620       630       640       650        

      660       670       680       690       700       710        
pF1KSD SNSTESSETSTGSLCKESFSGQVSSSSLMPLTPFWTLLQSNVPVLQPPLPLEMPPPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SNSTESSETSTGSLCKESFSGQVSSSSLMPLTPFWTLLQSNVPVLQPPLPLEMPPPPPPP
      660       670       680       690       700       710        

      720       730       740       750       760       770        
pF1KSD PESPPPPPPPPPPAEDGEIQEVEMEDEGSEEPPAPGTEEDTPLKPSAQTTVVTSQSSVDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PESPPPPPPPPPPAEDGEIQEVEMEDEGSEEPPAPGTEEDTPLKPSAQTTVVTSQSSVDS
      720       730       740       750       760       770        

      780       790       800       810       820       830        
pF1KSD TISSSSSTKGIKRKATEISTAVVQRSATIGSSPVLYSQSAIATGHQAAGIGNQATGIGHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TISSSSSTKGIKRKATEISTAVVQRSATIGSSPVLYSQSAIATGHQAAGIGNQATGIGHQ
      780       790       800       810       820       830        

      840       850       860       870       880       890        
pF1KSD TIPVSLPAAGMGHQARGMSLQSNYLGLAAAPAIMSYAECSVPIGVTAPSLQPVQARGAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TIPVSLPAAGMGHQARGMSLQSNYLGLAAAPAIMSYAECSVPIGVTAPSLQPVQARGAVP
      840       850       860       870       880       890        

      900       910       920       930       940       950        
pF1KSD TATIIEPPPPPPPPPPPPPPAPKMPPPEKTKKGRKDKAKKSKTKMPSLVKKWQSIQRELD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TATIIEPPPPPPPPPPPPPPAPKMPPPEKTKKGRKDKAKKSKTKMPSLVKKWQSIQRELD
      900       910       920       930       940       950        

      960       970       980       990      1000      1010       
pF1KSD EEDNSSSSEEDRESTAQKRIEEWKQQQLVSGMAERNANFEALPEDWRARLKRRKMAPNT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EEDNSSSSEEDRESTAQKRIEEWKQQQLVSGMAERNANFEALPEDWRARLKRRKMAPNT
      960       970       980       990      1000      1010       




1017 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:37:12 2016 done: Thu Nov  3 04:37:14 2016
 Total Scan time: 17.970 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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