GENSCAN 1.0	Date run:  3-Nov-116	Time: 04:15:11

Sequence gi568815581r:49198416_49417725 : 219310 bp : 46.75% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    489    484    6                               1.05
 1.02 Term -   8467   8342  126  1  0   91   45   138 0.798   8.08
 1.01 Init -   9007   8924   84  1  0   96  105   156 0.998  18.92
 1.00 Prom -   9395   9356   40                             -11.82

 2.00 Prom +  10653  10692   40                              -7.96
 2.01 Init +  12310  12426  117  0  0   90   96   202 0.938  21.40
 2.02 Intr +  12692  12800  109  1  1   89   68     5 0.417  -1.54
 2.03 Intr +  15458  15566  109  0  1   70   95    37 0.504   1.94
 2.04 Intr +  18058  18283  226  1  1   80  110   300 0.531  29.39
 2.05 Intr +  19324  19500  177  0  0   74   75   282 0.965  25.62
 2.06 Intr +  21125  21210   86  1  2  109   60    51 0.963   3.02
 2.07 Intr +  21443  21538   96  2  0   98   80   117 0.999  11.02
 2.08 Intr +  21826  21911   86  1  2   65   90    82 0.806   5.56
 2.09 Intr +  23676  23810  135  1  0   72   77    90 0.960   6.84
 2.10 Term +  24137  24300  164  0  2  100   48   243 0.999  19.60
 2.11 PlyA +  24581  24586    6                               1.05

 3.02 PlyA -  24972  24967    6                              -3.94
 3.01 Sngl -  26580  25831  750  0  0   96   47  1468 0.431 139.68
 3.00 Prom -  29664  29625   40                              -3.56

 4.11 PlyA -  29915  29910    6                              -0.45
 4.10 Term -  32503  32284  220  0  1   48   55   128 0.106   2.01
 4.09 Intr -  59494  59348  147  0  0  109   95   -10 0.002   1.15
 4.08 Intr -  92158  91992  167  1  2  125   66    34 0.308   3.66
 4.07 Intr - 100509 100217  293  1  2   90   69   251 0.679  20.25
 4.06 Intr - 103365 103232  134  2  2   72   70   -47 0.199  -7.81
 4.05 Intr - 107274 107220   55  1  1   84   98   100 0.720   8.64
 4.04 Intr - 113041 112897  145  1  1   46   99   202 0.991  16.96
 4.03 Intr - 113627 113512  116  0  2   68   94    12 0.959  -0.03
 4.02 Intr - 114430 114283  148  1  1   72  111   122 0.984  12.71
 4.01 Init - 119247 118411  837  0  0   73   96   704 0.921  64.40
 4.00 Prom - 121979 121940   40                              -5.76

 5.03 PlyA - 123198 123193    6                               1.05
 5.02 Term - 124622 124468  155  0  2   51   53    87 0.783  -0.42
 5.01 Init - 125019 124923   97  0  1   58   57   114 0.836   5.77
 5.00 Prom - 128715 128676   40                              -3.46

 6.03 PlyA - 128758 128753    6                               1.05
 6.02 Term - 162928 162919   10  0  1  100   49     6 0.374  -4.43
 6.01 Init - 163546 163494   53  1  2   84  100   119 0.774  11.33
 6.00 Prom - 191879 191840   40                              -1.96

 7.03 PlyA - 192320 192315    6                               1.05
 7.02 Term - 196787 196702   86  0  2   74   49    63 0.304  -1.18
 7.01 Init - 202355 202064  292  2  1   49   91   141 0.409   7.81
 7.00 Prom - 204676 204637   40                              -7.66

 8.07 PlyA - 205665 205660    6                               1.05
 8.06 Term - 206789 206577  213  2  0   93   55   434 0.916  37.83
 8.05 Intr - 208439 208344   96  2  0   99  105    95 0.999  12.51
 8.04 Intr - 210743 210627  117  2  0   88   91   120 0.998  12.96
 8.03 Intr - 211058 210916  143  0  2   55   89   288 0.997  25.67
 8.02 Intr - 213424 213263  162  2  0   85  113   116 0.991  13.75
 8.01 Init - 214849 214762   88  1  1  104   77    50 0.975   6.34

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:49198416_49417725|GENSCAN_predicted_peptide_1|69_aa
MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
KEKGGCLIS

>gi568815581r:49198416_49417725|GENSCAN_predicted_CDS_1|210_bp
atggcccaggatctcagcgagaaggacctgttgaagatggaggtggagcagctgaagaaa
gaagtgaaaaacacaagaattccgatttccaaagcgggaaaggaaatcaaggagtacgtg
gaggcccaagcaggaaacgatccttttctcaaaggcatccctgaggacaagaatcccttc
aaggagaaaggtggctgtctgataagctga

>gi568815581r:49198416_49417725|GENSCAN_predicted_peptide_2|434_aa
MAELQQLQEFEIPTGREALRGNHSALLRVADYCEDNYVQVSPQVHPSEFPRVNPETQSLR
PHTDAGDHSISRPALVKEGPELNQNLLSCLVLISWVDFFAYSIFLVTYAEEIQPRTQWKM
LALRPGLCVFQATDKRKALEETMAFTTQALASVAYQVGNLAGHTLRMLDLQGAALRQVEA
RVSTLGQMVNMHMEKVARREIGTLATVQRLPPGQKVIAPENLPPLTPYCRRPLNFGCLDD
IGHGIKDLSTQLSRTGTLSRKSIKAPATPASATLGRPPRIPEPVHLPVVPDGRLSAASSA
FSLASAGSLDPPPPPAAVEVFQRPPTLEELSPPPPDEELPLPLDLPPPPPLDGDELGLPP
PPPGFGPDEPSWVPASYLEKVVTLYPYTSQKDNELSFSEGTVICVTRRYSDGWCEGVSSE
GTGFFPGNYVEPSC

>gi568815581r:49198416_49417725|GENSCAN_predicted_CDS_2|1305_bp
atggcggagctacagcagctgcaggagtttgagatccccactggccgggaggctctgagg
ggcaaccacagtgccctgctgcgggtcgctgactactgcgaggacaactatgtgcaggtg
tcacctcaggttcatccttctgagttcccacgggtcaatccagagacccaaagcctccgt
cctcacacagatgctggcgatcattctatttccaggccggctctggtaaaggaaggtcct
gaactaaatcaaaatctgctctcctgtctggtgttaatatcctgggttgatttctttgcc
tattcaatcttcttggtgacctatgctgaggagatccagccaaggacccagtggaagatg
ctggcccttaggccagggctgtgtgtatttcaggccacagacaagcggaaggcgctggag
gagaccatggccttcactacccaggcactggccagcgtggcctaccaggtgggcaacctg
gccgggcacactctgcgcatgttggacctgcagggggccgccctgcggcaggtggaagcc
cgtgtaagcacgctgggccagatggtgaacatgcatatggagaaggtggcccgaagggag
atcggcaccttagccactgtccagcggctgccccccggccagaaggtcatcgccccagag
aacctaccccctctcacgccctactgcaggagacccctcaactttggctgcctggacgac
attggccatgggatcaaggacctcagcacgcagctgtcaagaacaggcaccctgtctcga
aagagcatcaaggcccctgccacacccgcctccgccaccttggggagaccaccccggatt
cccgagccagtgcacctgccggtggtgcccgacggcagactctccgccgcctcctctgcg
ttttccctggcctcggccggctccttggacccacctcctccaccagcagccgtcgaggtg
ttccagcggcctcccacgctggaggagttgtccccacccccaccggacgaagagctgccc
ctgccactggacctgcctcctcctccacccctggatggagatgaattggggctgcctcca
cccccaccaggatttgggcctgatgagcccagctgggtgcctgcctcatacttggagaaa
gtggtgacactgtacccatacaccagccagaaggacaatgagctctccttctctgagggc
actgtcatctgtgtcactcgccgctactccgatggctggtgcgagggcgtcagctcagag
gggactggattcttccctgggaactatgtggagcccagctgctga

>gi568815581r:49198416_49417725|GENSCAN_predicted_peptide_3|249_aa
MAAQGAPRFLLTFDFDETIVDENSDDSIVRAAPGQRLPESLRATYREGFYNEYMQRVFKY
LGEQGVRPRDLSAIYEAIPLSPGMSDLLQFVAKQGACFEVILISDANTFGVESSLRAAGH
HSLFRRILSNPSGPDARGLLALRPFHTHSCARCPANMCKHKVLSDYLRERAHDGVHFERL
FYVGDGANDFCPMGLLAGGDVAFPRRGYPMHRLIQEAQKAEPSSFRASVVPWETAADVRL
HLQQVLKSC

>gi568815581r:49198416_49417725|GENSCAN_predicted_CDS_3|750_bp
atggccgcgcagggcgcgccgcgcttcctcctgaccttcgacttcgacgagactatcgtg
gacgaaaacagcgacgattcgatcgtgcgcgccgcgccgggccagcggctcccggagagc
ctgcgagccacctaccgcgagggcttctacaacgagtacatgcagcgcgtcttcaagtac
ctgggcgagcagggcgtgcggccgcgggacctgagcgccatctacgaagccatccctttg
tcgccaggcatgagcgacctgctgcagtttgtggcaaaacagggcgcctgcttcgaggtg
attctcatctccgatgccaacacctttggcgtggagagctcgctgcgcgccgccggccac
cacagcctgttccgccgcatcctcagcaacccgtcggggccggatgcgcggggactgctg
gctctgcggccgttccacacacacagctgcgcgcgctgccccgccaacatgtgcaagcac
aaggtgctcagcgactacctgcgcgagcgggcccacgacggcgtgcacttcgagcgcctc
ttctacgtgggcgacggcgccaacgacttctgccccatggggctgctggcgggcggcgac
gtggccttcccgcgccgcggctaccccatgcaccgcctcattcaggaggcccagaaggcc
gagcccagctcgttccgcgccagcgtggtgccctgggaaacggctgcagatgtgcgcctc
cacctgcaacaggtgctgaagtcgtgctga

>gi568815581r:49198416_49417725|GENSCAN_predicted_peptide_4|753_aa
MAQEDSRRGQVPSSFYHGANQELDLSTKVYKRESGSPYSVLVDTKMSKPHLHETEEQPYF
RETRAVSDVHAVKEDRENSDDTEEEEEEVSYKREQIIVEVNLNNQTLNVSKGEKGVSSQS
KETPVLKTSSEEEEEESEEEATDDSNDYGENEKQKKKEKIVEKVSVTQRRTRRAASVAAA
TTSPTPRTTRGRRKSVEPPKRKKRATKEPKAPVQKAKCEEKETLTCEKCPRVFNTRWYLE
KHMNVTHRRMQICDKCGKKFVLESELSLHQQTDCEKNIQCVSCNKSFKKLWSLHEHIKIV
HGYAEKKFSCEICEKKFYTMAHVRKHMVAHTKDMPFTCETCGKSFKRSMSLKVHSLQHSG
EKPFRCENCDERFQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQYFDEHMKTHTGAYSL
VNGNDGVDDDDNSSAGITGLKQHTLPEVEVFKTVRGNRLKRRKTIWAQNSSRKMNMSHRE
KPFICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVTSPV
NVPPAVQIPLTTSPATPVPSVVNTATTPTPPINMNPATTITSIGGTRALGELWSMSKEML
LTFSAPKRYLLHQGTSPLGQALPPDQCNGHSSFWPHSHFDPLILTCPLAHGYVRNNGTHF
TGAKPKEKSEVANGTPQNTRCWRSRSLRGRREAWPRAARPFDVRRHRCDWTVACDVGDCG
GLRCCSSRSAGRGSGSGSGSRAFKGDAAAARGG

>gi568815581r:49198416_49417725|GENSCAN_predicted_CDS_4|2262_bp
atggcacaagaagatagccgtcgtggtcaagtgccatcttccttttatcatggtgccaac
caagaacttgacctgtccaccaaagtgtacaaaagggaatcaggaagtccttattctgtg
ttagtggacaccaagatgagcaaaccgcatctccatgaaacagaagaacagccatatttc
agggagacaagagcagtgtctgacgtgcatgctgttaaggaagaccgggagaattctgat
gacacagaggaggaagaggaagaagtctcttacaaaagggagcagatcatagtggaggta
aaccttaataatcaaacattaaatgtatctaaaggggaaaagggtgtctcttctcagtcc
aaagagactcctgttcttaagacaagcagtgaggaggaagaggaagagagtgaggaagag
gccacagatgacagcaatgactatggagagaatgaaaagcagaagaaaaaggagaagata
gtagagaaagtcagcgttacacaaaggagaaccaggagagctgcctctgttgccgcagct
accacttcccctactcccagaactacaagaggtcgtaggaagagtgtagagccacctaag
cgtaagaagcgggccacaaaggagcccaaagcaccagtccagaaagctaagtgtgaagag
aaagagactctgacctgtgagaagtgccccagggtatttaacactcgctggtacctggag
aagcacatgaacgttactcataggcgcatgcagatttgtgataaatgtggcaagaagttt
gtcctggaaagtgagctgtcccttcaccagcaaacagactgtgaaaaaaacattcagtgt
gtttcctgtaacaaatcgttcaagaaactctggtcccttcatgaacatatcaagatcgtc
catggatatgcagaaaagaaattttcctgtgaaatttgtgagaagaaattctataccatg
gctcatgtgcggaaacacatggttgcacacacaaaagacatgccatttacatgcgaaacc
tgtggaaaatcattcaaacgcagtatgtcactcaaggtgcactccttgcagcattctgga
gagaagccctttagatgcgagaactgtgacgaaaggtttcagtacaagtaccagctacgc
tcccacatgagcattcatattgggcacaaacagttcatgtgccagtggtgtggcaaggat
ttcaacatgaagcagtacttcgacgaacacatgaaaacacacactggagcttatagtctg
gtgaatggtaatgatggtgttgatgatgatgataatagcagtgctgggattacaggcttg
aaacaacacaccctgccagaagttgaagtttttaagacggttagaggaaatcgattaaaa
agaaggaaaacaatctgggctcagaattcatccagaaagatgaatatgagtcacagagag
aaaccctttatctgtgaaatctgtggcaaaagcttcaccagccgccccaacatgaagaga
caccgcagaactcacacaggcgagaagccctatccatgtgatgtgtgtggccagcggttc
cgcttctcgaacatgcttaaggcccacaaggagaagtgctttcgggtgaccagccccgtg
aatgtgccacctgctgtccagatcccacttacaacttccccagccaccccagttccttct
gtggtgaacacagccacaaccccaacccctccaatcaatatgaatcctgccaccaccatc
acatctataggaggaacaagagcactgggggaactctggagtatgagtaaggaaatgctt
ctcaccttctctgctccaaagagatatctgttacatcagggaacaagtcctctaggtcag
gcacttcctcctgaccagtgcaacgggcactccagcttctggcctcatagccactttgac
cccttgattctgacatgtcctctggctcatgggtatgtcagaaataatggcacccatttt
acaggtgcaaaaccaaaggaaaaaagtgaagtggccaatggcacaccacaaaatacaaga
tgctggcgctcccggagcctccggggcaggagggaggcgtggcctcgggcggcccgcccc
tttgatgtgcgccggcaccgctgcgattggacagtcgcttgtgacgttggggactgcggt
gggctccgctgctgcagcagccgcagcgccggccgcggctccggctccggctccggctcc
cgggcatttaaaggggacgcggcggctgcccgggggggatga

>gi568815581r:49198416_49417725|GENSCAN_predicted_peptide_5|83_aa
MDDFEGFNTSVEEVTADVVEIATELELEVEPEEIATATPAFSNHHPDHAEAINIEARPPI
GKMIDSLKDQIIANIFNIYLFIY

>gi568815581r:49198416_49417725|GENSCAN_predicted_CDS_5|252_bp
atggatgactttgagggtttcaacacttcagtggaggaagtcactgcagatgtggtggaa
atagcaacagaactagaattagaagtggagcctgaagaaattgccacagccaccccagcc
ttcagcaaccaccaccctgatcatgcagaagccatcaacattgaagcaagaccccccatc
ggcaaaatgattgattcactgaaggatcagataatcgctaacatttttaacatttattta
tttatttattga

>gi568815581r:49198416_49417725|GENSCAN_predicted_peptide_6|20_aa
MDRRGGGRGGGGGGGRPGLC

>gi568815581r:49198416_49417725|GENSCAN_predicted_CDS_6|63_bp
atggaccgccgaggcggcggccggggcggcggaggcggaggcggccggcccgggctctgc
tga

>gi568815581r:49198416_49417725|GENSCAN_predicted_peptide_7|125_aa
MGAVQKGIPHKHFHGKTQKSLQCYQQAVGIVGNKGKNLVKRMNVLIEHIKHSESWNRFLK
HIKINDQKKKDAKEKSMWVQLKRQPAPPREAHIVKTNDGSNLPVTSRASLCQPAQDVQKN
IPGKD

>gi568815581r:49198416_49417725|GENSCAN_predicted_CDS_7|378_bp
atgggtgctgttcaaaaaggaattccccacaaacatttccatggcaaaactcaaaagagt
ctacagtgttaccagcaagctgttggcattgttggaaacaagggcaagaatcttgtcaag
agaatgaatgtacttattgagcacattaagcactctgagagctggaatcgcttcctgaaa
catatcaaaataaatgatcagaaaaagaaagacgccaaagagaaaagtatgtgggttcaa
ctgaagcgccagcctgctccacccagagaagcacacattgtgaaaaccaatgatggcagc
aacctgcctgttactagccgtgccagcctgtgtcaaccagcacaagatgttcagaaaaat
atcccggggaaagactag

>gi568815581r:49198416_49417725|GENSCAN_predicted_peptide_8|272_aa
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT
EAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK
LEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQ

>gi568815581r:49198416_49417725|GENSCAN_predicted_CDS_8|819_bp
atggctgccaaagtgtttgagtccattggcaagtttggcctggccttagctgttgcagga
ggcgtggtgaactctgccttatataatgtggatgctgggcacagagctgtcatctttgac
cgattccgtggagtgcaggacattgtggtaggggaagggactcattttctcatcccgtgg
gtacagaaaccaattatctttgactgccgttctcgaccacgtaatgtgccagtcatcact
ggtagcaaagatttacagaatgtcaacatcacactgcgcatcctcttccggcctgtcgcc
agccagcttcctcgcatcttcaccagcatcggagaggactatgatgagcgtgtgctgccg
tccatcacaactgagatcctcaagtcagtggtggctcgctttgatgctggagaactaatc
acccagagagagctggtctccaggcaggtgagcgacgaccttacagagcgagccgccacc
tttgggctcatcctggatgacgtgtccttgacacatctgaccttcgggaaggagttcaca
gaagcggtggaagccaaacaggtggctcagcaggaagcagagagggccagatttgtggtg
gaaaaggctgagcaacagaaaaaggcggccatcatctctgctgagggcgactccaaggca
gctgagctgattgccaactcactggccactgcaggggatggcctgatcgagctgcgcaag
ctggaagctgcagaggacatcgcgtaccagctctcacgctctcggaacatcacctacctg
ccagcggggcagtccgtgctcctccagctgccccagtga