Result of FASTA (omim) for pF1KSDA0873
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0873, 447 aa
  1>>>pF1KSDA0873 447 - 447 aa - 447 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4350+/-0.000476; mu= 13.1762+/- 0.029
 mean_var=105.0870+/-21.613, 0's: 0 Z-trim(111.1): 21  B-trim: 182 in 1/50
 Lambda= 0.125112
 statistics sampled from 19658 (19667) to 19658 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.575), E-opt: 0.2 (0.231), width:  16
 Scan time:  7.920

The best scores are:                                      opt bits E(85289)
NP_001015048 (OMIM: 603885) BAG family molecular c ( 447) 2879 530.7 2.9e-150
NP_004864 (OMIM: 603885) BAG family molecular chap ( 447) 2879 530.7 2.9e-150
NP_001015049 (OMIM: 603885) BAG family molecular c ( 488) 2879 530.8 3.1e-150
XP_005270344 (OMIM: 603883,612954,613881) PREDICTE ( 574)  230 52.7   3e-06
NP_004272 (OMIM: 603883,612954,613881) BAG family  ( 575)  230 52.7   3e-06
NP_001191807 (OMIM: 603884) BAG family molecular c ( 421)  200 47.2  0.0001
NP_004865 (OMIM: 603884) BAG family molecular chap ( 457)  200 47.2 0.00011


>>NP_001015048 (OMIM: 603885) BAG family molecular chape  (447 aa)
 initn: 2879 init1: 2879 opt: 2879  Z-score: 2818.7  bits: 530.7 E(85289): 2.9e-150
Smith-Waterman score: 2879; 100.0% identity (100.0% similar) in 447 aa overlap (1-447:1-447)

               10        20        30        40        50        60
pF1KSD MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDKNYKKLERILTKQLFEIDSVDTEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDKNYKKLERILTKQLFEIDSVDTEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFEEAQSLVREKIVPFYNGGNCVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFEEAQSLVREKIVPFYNGGNCVT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCMKKQPSLPLSEDAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCMKKQPSLPLSEDAH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD PSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIRN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIKNELLQAQNPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIKNELLQAQNPS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKLFAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKLFAC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD EEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKC
              370       380       390       400       410       420

              430       440       
pF1KSD KAARKQAVRLAQNILSYLDLKSDEWEY
       :::::::::::::::::::::::::::
NP_001 KAARKQAVRLAQNILSYLDLKSDEWEY
              430       440       

>>NP_004864 (OMIM: 603885) BAG family molecular chaperon  (447 aa)
 initn: 2879 init1: 2879 opt: 2879  Z-score: 2818.7  bits: 530.7 E(85289): 2.9e-150
Smith-Waterman score: 2879; 100.0% identity (100.0% similar) in 447 aa overlap (1-447:1-447)

               10        20        30        40        50        60
pF1KSD MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDKNYKKLERILTKQLFEIDSVDTEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDKNYKKLERILTKQLFEIDSVDTEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFEEAQSLVREKIVPFYNGGNCVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFEEAQSLVREKIVPFYNGGNCVT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCMKKQPSLPLSEDAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCMKKQPSLPLSEDAH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD PSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIRN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIKNELLQAQNPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIKNELLQAQNPS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKLFAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKLFAC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD EEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKC
              370       380       390       400       410       420

              430       440       
pF1KSD KAARKQAVRLAQNILSYLDLKSDEWEY
       :::::::::::::::::::::::::::
NP_004 KAARKQAVRLAQNILSYLDLKSDEWEY
              430       440       

>>NP_001015049 (OMIM: 603885) BAG family molecular chape  (488 aa)
 initn: 2879 init1: 2879 opt: 2879  Z-score: 2818.2  bits: 530.8 E(85289): 3.1e-150
Smith-Waterman score: 2879; 100.0% identity (100.0% similar) in 447 aa overlap (1-447:42-488)

                                             10        20        30
pF1KSD                               MDMGNQHPSISRLQEIQKEVKSVEQQVIGF
                                     ::::::::::::::::::::::::::::::
NP_001 PFDRNQELETCIRPLWTPSGSACETEHNKSMDMGNQHPSISRLQEIQKEVKSVEQQVIGF
              20        30        40        50        60        70 

               40        50        60        70        80        90
pF1KSD SGLSDDKNYKKLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLSDDKNYKKLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPH
              80        90       100       110       120       130 

              100       110       120       130       140       150
pF1KSD RIEIQNIFEEAQSLVREKIVPFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIEIQNIFEEAQSLVREKIVPFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARY
             140       150       160       170       180       190 

              160       170       180       190       200       210
pF1KSD HTLTKICAVQEIIEDCMKKQPSLPLSEDAHPSVAKINFVMCEVNKARGVLIALLMGVNNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HTLTKICAVQEIIEDCMKKQPSLPLSEDAHPSVAKINFVMCEVNKARGVLIALLMGVNNN
             200       210       220       230       240       250 

              220       230       240       250       260       270
pF1KSD ETCRHLSCVLSGLIADLDALDVCGRTEIRNYRREVVEDINKLLKYLDLEEEADTTKAFDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETCRHLSCVLSGLIADLDALDVCGRTEIRNYRREVVEDINKLLKYLDLEEEADTTKAFDL
             260       270       280       290       300       310 

              280       290       300       310       320       330
pF1KSD RQNHSILKIEKVLKRMREIKNELLQAQNPSELYLSSKTELQGLIGQLDEVSLEKNPCIRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQNHSILKIEKVLKRMREIKNELLQAQNPSELYLSSKTELQGLIGQLDEVSLEKNPCIRE
             320       330       340       350       360       370 

              340       350       360       370       380       390
pF1KSD ARRRAVIEVQTLITYIDLKEALEKRKLFACEEHPSHKAVWNVLGNLSEIQGEVLSFDGNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARRRAVIEVQTLITYIDLKEALEKRKLFACEEHPSHKAVWNVLGNLSEIQGEVLSFDGNR
             380       390       400       410       420       430 

              400       410       420       430       440       
pF1KSD TDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSYLDLKSDEWEY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSYLDLKSDEWEY
             440       450       460       470       480        

>>XP_005270344 (OMIM: 603883,612954,613881) PREDICTED: B  (574 aa)
 initn: 418 init1: 222 opt: 230  Z-score: 233.1  bits: 52.7 E(85289): 3e-06
Smith-Waterman score: 230; 35.5% identity (79.6% similar) in 93 aa overlap (6-97:417-509)

                                        10        20        30     
pF1KSD                          MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSD
                                     .::.. ... : ..:...:: : .: : . 
XP_005 KSVATEERAAPSTAPAEATPPKPGEAEAPPKHPGVLKVEAILEKVQGLEQAVDNFEGKKT
        390       400       410       420       430       440      

          40        50        60        70        80         90    
pF1KSD DKNYKKLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNA-NHPHRIEI
       ::.:  .:. :::.:. .:::: ::..:..:::. ...... .:..:::.: . : ....
XP_005 DKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEKLEQKAIDVPGQVQV
        450       460       470       480       490       500      

          100       110       120       130       140       150    
pF1KSD QNIFEEAQSLVREKIVPFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARYHTLT
        ..                                                         
XP_005 YELQPSNLEADQPLQAIMEMGAVAADKGKKNAGNAEDPHTETQQPEATAAATSNPSSMTD
        510       520       530       540       550       560      

>>NP_004272 (OMIM: 603883,612954,613881) BAG family mole  (575 aa)
 initn: 282 init1: 222 opt: 230  Z-score: 233.1  bits: 52.7 E(85289): 3e-06
Smith-Waterman score: 230; 35.5% identity (79.6% similar) in 93 aa overlap (6-97:418-510)

                                        10        20        30     
pF1KSD                          MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSD
                                     .::.. ... : ..:...:: : .: : . 
NP_004 KSVATEERAAPSTAPAEATPPKPGEAEAPPKHPGVLKVEAILEKVQGLEQAVDNFEGKKT
       390       400       410       420       430       440       

          40        50        60        70        80         90    
pF1KSD DKNYKKLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNA-NHPHRIEI
       ::.:  .:. :::.:. .:::: ::..:..:::. ...... .:..:::.: . : ....
NP_004 DKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEKLEQKAIDVPGQVQV
       450       460       470       480       490       500       

          100       110       120       130       140       150    
pF1KSD QNIFEEAQSLVREKIVPFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARYHTLT
        ..                                                         
NP_004 YELQPSNLEADQPLQAIMEMGAVAADKGKKNAGNAEDPHTETQQPEATAAATSNPSSMTD
       510       520       530       540       550       560       

>>NP_001191807 (OMIM: 603884) BAG family molecular chape  (421 aa)
 initn: 377 init1: 200 opt: 200  Z-score: 205.8  bits: 47.2 E(85289): 0.0001
Smith-Waterman score: 200; 41.6% identity (79.2% similar) in 77 aa overlap (8-84:342-418)

                                      10        20        30       
pF1KSD                        MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDK
                                     :::... .. ..:. .::.:  : : . ::
NP_001 YGNATSDHPNNQDQSSSLPEECVPSDESTPPSIKKIIHVLEKVQYLEQEVEEFVGKKTDK
             320       330       340       350       360       370 

        40        50        60        70        80        90       
pF1KSD NYKKLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNI
        :  ::..:::.:.:.:::.: :. ...::::.:. . . .:..::.             
NP_001 AYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEKLEKKGL          
             380       390       400       410       420           

       100       110       120       130       140       150       
pF1KSD FEEAQSLVREKIVPFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKIC

>>NP_004865 (OMIM: 603884) BAG family molecular chaperon  (457 aa)
 initn: 377 init1: 200 opt: 200  Z-score: 205.2  bits: 47.2 E(85289): 0.00011
Smith-Waterman score: 200; 41.6% identity (79.2% similar) in 77 aa overlap (8-84:378-454)

                                      10        20        30       
pF1KSD                        MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDK
                                     :::... .. ..:. .::.:  : : . ::
NP_004 YGNATSDHPNNQDQSSSLPEECVPSDESTPPSIKKIIHVLEKVQYLEQEVEEFVGKKTDK
       350       360       370       380       390       400       

        40        50        60        70        80        90       
pF1KSD NYKKLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNI
        :  ::..:::.:.:.:::.: :. ...::::.:. . . .:..::.             
NP_004 AYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEKLEKKGL          
       410       420       430       440       450                 

       100       110       120       130       140       150       
pF1KSD FEEAQSLVREKIVPFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKIC




447 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:52:09 2016 done: Thu Nov  3 03:52:10 2016
 Total Scan time:  7.920 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com