GENSCAN 1.0	Date run:  3-Nov-116	Time: 03:48:22

Sequence gi568815596r:72975543_73212777 : 237235 bp : 48.00% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   4566   4683  118  2  1   52  106    97 0.722   6.26
 1.02 Intr +   5406   5467   62  1  2   91   80    32 0.478   1.15
 1.03 Term +   8168   8296  129  1  0   79   54   106 0.680   4.48
 1.04 PlyA +   8460   8465    6                              -1.75

 2.14 PlyA -  10566  10561    6                               1.05
 2.13 Term -  11331  11162  170  1  2   66   40    54 0.106  -3.56
 2.12 Intr -  12806  12716   91  2  1   80   82    73 0.644   5.47
 2.11 Intr -  23472  23407   66  0  0   95   68    84 0.773   6.20
 2.10 Intr -  24945  24889   57  0  0   97  105    87 0.952  10.38
 2.09 Intr -  26036  25983   54  2  0  121   92    24 0.786   5.28
 2.08 Intr -  27922  27797  126  1  0   51   98    36 0.616   1.78
 2.07 Intr -  30637  30438  200  2  2   86   51    95 0.827   4.67
 2.06 Intr -  47034  46980   55  0  1   96  115    58 0.983   7.85
 2.05 Intr -  47672  47646   27  2  0  108   89     8 0.689   1.21
 2.04 Intr -  65389  65312   78  1  0  135   93    81 0.804  13.05
 2.03 Intr -  83054  82986   69  2  0  112  107   133 0.740  16.98
 2.02 Intr -  92977  92888   90  1  0   70  105    10 0.001   1.09
 2.01 Init -  96163  96062  102  1  0  107   94   141 0.001  14.99
 2.00 Prom -  97734  97695   40                              -6.26

 3.04 PlyA -  97861  97856    6                               1.05
 3.03 Term - 100182  99979  204  0  0   98   38   491 0.999  42.47
 3.02 Intr - 100640 100451  190  1  1  115  116   138 0.999  18.89
 3.01 Init - 106012 104526 1487  1  2   41    6   679 0.597  44.38
 3.00 Prom - 106466 106427   40                             -12.30

 4.05 PlyA - 106504 106499    6                              -0.45
 4.04 Term - 107137 107038  100  0  1   94   45   122 0.988   6.10
 4.03 Intr - 113207 112508  700  0  1  121  111   539 0.989  50.04
 4.02 Intr - 113773 113337  437  0  2  136   72   659 0.978  62.32
 4.01 Init - 121855 121803   53  1  2   56   72    59 0.014   1.73
 4.00 Prom - 123789 123750   40                              -2.26

 5.02 PlyA - 128184 128179    6                               1.05
 5.01 Sngl - 137235 136801  435  0  0  106   48   904 0.785  82.47
 5.00 Prom - 138317 138278   40                              -0.36

 6.00 Prom + 146632 146671   40                              -4.66
 6.01 Init + 151190 151361  172  1  1   41   95    80 0.557   3.60
 6.02 Intr + 154204 154351  148  2  1   89   44    54 0.045   0.39
 6.03 Intr + 163502 163546   45  2  0  115   81    15 0.099   1.02
 6.04 Intr + 167758 167831   74  1  2   71   50   100 0.109   3.55
 6.05 Intr + 188075 188155   81  0  0   58   86    38 0.246   0.21
 6.06 Intr + 193502 193656  155  0  2   38   80    98 0.128   3.79
 6.07 Term + 203218 203331  114  0  0   70   42    83 0.195   0.47
 6.08 PlyA + 203397 203402    6                               1.05

 7.00 Prom + 206224 206263   40                              -3.06
 7.01 Init + 227125 227506  382  0  1   80   84   304 0.991  24.23
 7.02 Intr + 232858 233072  215  2  2  104   75   112 0.594   9.93
 7.03 Term + 235229 235387  159  1  0   90   49   249 0.999  19.14
 7.04 PlyA + 235773 235778    6                              -0.45


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  48941  48855   87  2  0   86   64    74 0.945   3.44
S.002 Intr +  95417  95615  199  1  1  108   37   119 0.872   7.72
S.003 Intr +  95795  95966  172  0  1   54   43    84 0.888  -0.50
S.004 Term +  96225  96447  223  0  1   87   33   248 0.989  15.59
S.005 Init + 117958 118042   85  0  1   70   89    54 0.821   5.00
S.006 Term + 167758 167845   88  1  1   71   45   129 0.858   4.03
S.007 Init + 181230 181275   46  2  1   77   55    73 0.808   1.87
S.008 Term + 181484 181746  263  0  2   82   48   132 0.928   4.29


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:72975543_73212777|GENSCAN_predicted_peptide_1|102_aa
MLASPPLFSLLSSLPLFLPSTVVGNTVNDSNGVKGEIIKRIIKPQNWKAIYATSTYGAPT
APAPPIAVNEMSIPLATATSGTQDLALLPAGNCSWYPSSKAP

>gi568815596r:72975543_73212777|GENSCAN_predicted_CDS_1|309_bp
atgctggcctcccctcccctcttctctcttctctcctccctccctctcttccttccttcc
accgttgtgggcaacacagtcaatgattcaaatggtgtaaaaggggaaataataaaaaga
attataaaaccccagaactggaaggccatttacgcaacaagcacttatggagcacctacg
gcccctgccccacccattgctgtcaacgagatgtctattcccctggccactgccacctct
gggacccaggacttggccctccttcctgctggtaactgctcctggtacccctcctccaag
gccccttga

>gi568815596r:72975543_73212777|GENSCAN_predicted_peptide_2|394_aa
MADTATTASAAAASAASASSDAPPFQLGKPRFQQGSYKIASGVMFDSVRFISAETSQSWG
VSKETSFYGRFRHFLDIIDPRTLFVTERRLREAVQLLEDYKHGTLRPGVTNEQLWSAQKI
KQAILHPDTNEKIFMPFRMSGICQGCLLVATSDAQQGKQEGMRPLSQGSELTRCHVLPRA
VSQSKLDDQAEPKSEEINSFCDEAVARRIIKGTLWCHGQCPGQQLSGKCSECYWAVSYDV
PGGPSTVRGVVGLLLPNQTLASTVFWQWLNQSHNACVNYANRNATKPSPASKFIQGYLGA
VISAVSIAVGLNVLVQKANKFTPATRLLIQRFVPFPAVGDCGRTGICGGDFSCVFAELGV
YELTIDAPGWGPGDATKLCLALKKPTPCLGRRAK

>gi568815596r:72975543_73212777|GENSCAN_predicted_CDS_2|1185_bp
atggcggatacagcgactacagcatcggcggcggcggctagtgccgctagcgcctcgagc
gatgcacctcctttccaactgggcaaaccccgcttccagcagggatcttacaaaattgca
agtggtgtcatgtttgacagtgtaaggttcatcagtgctgagacatcccagagttggggt
gtctctaaggagacgtccttctatggccgcttcaggcacttcttggatatcatcgaccct
cgcacactctttgtcactgagagacgtctcagagaggctgtgcagctgctggaggactat
aagcatgggaccctgcgcccgggggtcaccaatgaacagctctggagtgcacagaaaatc
aagcaggctattctacatccggacaccaatgagaagatcttcatgccatttagaatgtca
gggatttgtcagggatgtcttctcgtggcaacctcagatgctcagcagggcaagcaggaa
ggcatgaggcctctgagccagggctcagaactgacacgctgccacgtcctcccacgtgct
gtcagtcagagcaagttagatgaccaagcagagccaaaaagtgaggaaataaattccttc
tgtgatgaggccgtggcaaggaggattataaagggaaccctgtggtgtcacgggcagtgt
cctggacagcagttgtctggtaaatgcagtgagtgctattgggctgtatcttacgatgtt
cctggtggtccaagtacagttcgaggggtagtcggtcttctcttgcccaaccagacactg
gcatccactgtcttctggcagtggctgaaccagagccacaatgcctgtgtcaactatgca
aaccgcaatgcgaccaagccttcacctgcatccaagttcatccagggatacctgggagct
gtcatcagcgccgtctccattgctgtgggccttaatgtcctggttcagaaagccaacaag
ttcaccccagccacccgccttctcatccagaggtttgtgccgttccctgctgtaggtgat
tgtgggcgcacaggtatatgtggaggggatttcagctgcgtctttgctgaacttggagtc
tatgagctcaccatagatgccccaggctggggccctggagatgccacaaaactctgcttg
gcccttaagaagcctacaccttgtttggggagaagggcaaaatag

>gi568815596r:72975543_73212777|GENSCAN_predicted_peptide_3|626_aa
MLSTNLFAAASPAAATAAAAATTAAPEATPPGLLGLTNPFLTSLQSNPFFEELIADIALN
SPSPAPSLPSASRASPTPLASPGKALPEWDNTFNVFAASRLRPEARSEILAPAGVGLEAA
GLQDPGPGAMTAKAAEPQGEPGGGGGGGGGGGGRGGSSVWLEPRVPLDLGPNHQSASAAD
PGLLGSVGAGLPSSSAQLQLRASGSEPDRELPAPEVEAGQSPADSGTSLFSSPEVISVWE
RLPGPESAAEGQDDESSRGENQLCPDVETADDAWPWDVVTISPAAETASLVFRGESDEPA
PQVQPESPETVSPKGSEGLPPPEPEPKPEWVSDKGLQPSTPPPKPPRLFTPSRSQEEEEE
KAAVGLSNRGPETEGEDASPSALVVGPPETKEEGEKRESEESDSCSSATLLGQPGLEELV
EDASPPVSGPCLSAPASCPEGPAPIPCHSKSLALQSQHIWGTPEVGEGPEAPEAQGQDPV
GEGLGSLSATSQQADVPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSI
QPVTQAPQAGQMVDTKRLKDSAVLDQSAKYYHLTHDELISLLLQRERELSQRDEHVQELE
SYIDRLLVRIMETSPTLLQIPPGPPK

>gi568815596r:72975543_73212777|GENSCAN_predicted_CDS_3|1881_bp
atgctaagcactaacctttttgcagccgcctcccccgctgctgccactgctgccgctgcc
gccaccaccgccgcccctgaagccaccccacctggattattgggtcttaccaacccgttc
ctcacctctttgcagagcaaccccttcttcgaggagctcatagccgacatagcactaaac
tctccttcacctgctccctctctccccagtgcctcgagggccagccccacccccctggcc
tcccctgggaaagccctgcctgagtgggacaacaccttcaacgtctttgctgccagcagg
ctgcgtccagaggccaggagcgagatcctggcccctgcaggagtggggctggaggcggca
gggctgcaagacccaggccctggggccatgactgcgaaggcagctgagccccagggagag
cctgggggaggaggaggaggaggaggaggaggaggaggaagaggtgggagcagcgtgtgg
ctggagcccagggttcctctggacttgggaccgaaccaccagagcgcgagcgcggctgac
ccagggctcctcgggtcggtaggggctggcctgccctcctcgtcagcccagctacagctg
agagcctcaggctcagaaccagacagggaactgccagccccggaagtggaagcagggcag
agtccggcagacagtgggacatctctatttagctccccagaagtgatcagtgtgtgggag
aggctgccgggcccagagagcgctgctgagggccaggacgatgagtcctcccgaggcgaa
aatcagctttgccctgacgtcgagacagctgatgatgcctggccttgggatgtggtcacc
atttctcctgcagctgagacagcctcactagtctttcggggagagtctgatgagcctgct
ccccaggtgcagcctgaatcaccagaaactgtgagccccaaggggagcgaggggcttccc
ccaccggagcccgagcctaaacccgagtgggtgtctgacaaggggctgcagcccagcacc
ccacctcccaagccaccgcgcctcttcacaccctcaagatcccaggaggaggaggaggag
aaggccgcagtggggctgagtaacagggggccggagacagagggagaagatgcctcccca
agtgcactggttgtcggtcccccggagaccaaggaggagggagagaagcgtgagtcggag
gagtctgacagctgctcctctgcaaccctgctgggccagcctggcctggaagagctagtg
gaggatgccagcccccctgtgtctgggccctgcctgtctgcacccgccagctgccctgag
ggtcctgcccccataccctgtcactcaaagagcttggctcttcagagtcagcacatctgg
gggactccagaggttggagaaggccctgaggctcctgaggcccagggccaggatccagta
ggagaggggcttgggtccttgtcagccacctcccagcaggctgatgttccccaccccgtg
aagcccctcagtgccgcccctgtggagggcagccccgacaggaagcagtcccgctccagt
ctgagcatagccctgagcagtgggctggagaagctcaaaacagtcacatctgggagcatt
cagcctgtgacccaggccccccaggctggccagatggtggacaccaaaaggctgaaggac
tcagctgtgctggaccagtcggccaagtactaccacctgacccacgatgagctcatcagc
ctgctcctgcagcgggagcgggagctgagccagcgggacgagcatgtgcaggagctggag
agctacatcgaccggctgctggtgcggatcatggagacctcacccacgctgctgcagatc
cccccgggcccccccaaatag

>gi568815596r:72975543_73212777|GENSCAN_predicted_peptide_4|429_aa
MRVHTPVPACDQYDDERGWYKLHSKPGKKEKERGEIEVTIQFTRNNLSASMFDLSMKDKP
RSPFSKIRDKMKGKKKYDLESASAILPSSAIEDPDLGSLGKMGKAKGFFLRNKLRKSSLT
QSNTSLGSDSTLSSASGSLAYQGPGAELLTRSPSRSSWLSTEGGRDSAQSPKLFTHKRTY
SDEANQMRVAPPRALLDLQGHLDAASRSSLCVNGSHIYNEEPQGPVRHRSSISGSLPSSG
SLQAVSSRFSEEGPRSTDDTWPRGSRSNSSSEAVLGQEELSAQAKVLAPGASHPGEEEGA
RLPEGKPVQVATPIVASSEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRRSSLGEK
GGPILGASPHHSSSGEEKAKSSWFGLREAKDPTQKPRVPEKPLVTSRVAAAVTLPALADK
GWTIRAPFG

>gi568815596r:72975543_73212777|GENSCAN_predicted_CDS_4|1290_bp
atgcgtgtgcacacaccagtgccagcttgtgatcagtatgatgatgaaagagggtggtac
aagctgcactccaagccaggcaagaaggagaaggaacgcggcgagattgaagtcaccatc
cagttcacgcgcaacaacctgagcgccagtatgtttgacctgtccatgaaggacaagcca
aggtctcccttcagcaagatcagggacaagatgaagggcaagaagaagtatgatctggaa
tctgcctctgccatcctcccaagcagcgccatagaggatcctgacctgggcagcctgggc
aagatgggcaaagccaaaggcttcttcctccgcaacaagctgcgcaagtcgtccctgacc
cagtccaacacctcgctgggctcggacagcaccctgtcctcagccagcgggagcttggcc
taccagggacctggcgccgaactcctcacccgctcaccaagccgtagcagctggctgtcc
actgaagggggcagggactctgcacagtcccccaagctgttcacccataagaggacctac
agcgatgaggccaaccagatgcgagtggctcctcctcgggcccttctggaccttcagggc
cacctggatgctgcctcccgctcttcgctctgtgtcaatgggagccacatttacaatgag
gagccccagggccctgtgcggcaccgcagctccatctcgggctcgcttccatcctctggc
tccttgcaagctgtctcttcccggttctccgaggaggggcctcgttccacagatgacacc
tggcccagaggcagtcgtagcaacagcagctcagaggcagtgcttggacaggaggagctg
agtgctcaggctaaagtcctggcccctggggccagccaccctggagaggaggagggggcc
cggctaccagagggcaagccagtccaggttgccacacccatagtggcctcctctgaggct
gtggcagagaaggagggagcccggaaggaggaacgcaagccccggatgggtctcttccac
caccaccaccaaggcctaagtcggagcgagttgggtcgccgaagctctctgggggaaaag
gggggtcccatcctgggggcctccccacatcactcatccagtggggaggaaaaggccaag
agtagctggtttggcttgagagaagccaaggacccgactcagaaacccagagtccctgag
aagcccctggtgacatccagagttgctgctgctgtcacactgccagccttggcagacaaa
ggctggaccatcagggcaccttttggttga

>gi568815596r:72975543_73212777|GENSCAN_predicted_peptide_5|144_aa
MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREKYSTSVV
EKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASSAAACELVLTTMHRSLIGV
DKFLGQATVALDEVFGAGRAQHTQ

>gi568815596r:72975543_73212777|GENSCAN_predicted_CDS_5|435_bp
atggccctggtgcggggcgcggagccggcggcggggccttcccgctggctgcccacgcac
gtccaggtgacggtgctgcgggcccgcgggctgcggggcaagagctcgggagcgggcagc
accagcgacgcgtacacggtgatccaggtgggccgcgagaagtacagtacgtcggtggtg
gagaagacgcacggctgccccgagtggcgtgaggagtgctccttcgagctgccgccgggg
gccctggatggcctgctgcgggcgcaggaggccgacgcgggcccggcgccctgggccgcg
agctccgccgccgcctgcgagctggtgctcaccaccatgcaccgctcgctcatcggcgtc
gacaagttcctgggccaggccacggtggcgctggacgaggtcttcggcgcaggccgcgcc
cagcacacgcagtga

>gi568815596r:72975543_73212777|GENSCAN_predicted_peptide_6|262_aa
MGWTQRLTFKKEYENQQFYNFTMAKLGRPHLHQVVQINSTSDKSHGQNVPLICSHEKDCK
LHESRNHTCLADLHIFSFHHCARHTAGAQEIFVDLRKEQKQQNMPERGQRDGAENSNPLI
TRDLRCPEFIPMDILTSEWSEPLQFCHEETDTERLRNLPKATQPVVRTWVLDLGGGNSVR
MQATLRDQDSKGYGSSRRAAVPTGCSILKLPRGSPECKLTGMHIQGSPINSQNCLSVAVS
PEQQVLSFVALLTKNWTQPNIH

>gi568815596r:72975543_73212777|GENSCAN_predicted_CDS_6|789_bp
atgggctggactcagagactcaccttcaaaaaagagtatgaaaaccagcaattttacaat
tttacaatggcaaagcttggcaggccccaccttcatcaggtggtccagattaacagcacc
agtgataagtcccatggacagaatgtacccctgatatgcagccatgagaaagactgtaag
ctccatgagagcaggaaccacacctgcctggctgacctccacatcttcagcttccaccac
tgtgcccggcacacagcaggtgctcaagaaatatttgttgacttaagaaaggaacaaaaa
caacaaaacatgcccgaaagaggtcaaagagatggggctgaaaattccaaccctctaatt
acaagggatctacgctgccctgagttcatccccatggacatcctgaccagcgagtggtct
gagcctctgcagttctgccatgaggaaacagacacagagaggttaaggaacttgcccaag
gccacacagccagtagtgaggacttgggttttggacctgggtggaggaaacagtgtaaga
atgcaggctacactgcgtgaccaggattccaaaggctacggaagttctaggagggcagct
gttccaactggctgtagcattctgaagcttcccagaggctccccagagtgcaagctaaca
ggtatgcacattcagggatctccaatcaactcccagaactgcctgagtgtggcggtcagc
ccagagcagcaggtgctatcctttgtagcactgttaaccaaaaactggacacaaccaaat
atccactaa

>gi568815596r:72975543_73212777|GENSCAN_predicted_peptide_7|251_aa
MPSPRPRGSPPPAPSGSRVRPPRSGRSPAPRSPTGPNTPRAPGRFESPFSVEAILARPDP
CAPAASQPSGSACVHPAFWTAASLCATGGLPWACPTSWLPAYLSVGFYPVPGPRVAPVCG
LLGFGVTGLELAHCSGLWAFPDWAPTEDLQDTERQQKRVRTMFNLEQLEELEKVFAKQHN
LVGKKRAQLAARLKLTENQVRVWFQNRRVKYQKQQKLRAAVTSAEAASLDEPSSSSIASI
QSDDAESGVDG

>gi568815596r:72975543_73212777|GENSCAN_predicted_CDS_7|756_bp
atgcctagccccaggccgcgaggcagcccgccacccgctccctcgggctctcgggtccga
cctccgcgctctggccgctctccggcgcccaggtcccctactggcccgaacacgccccgc
gctcccggacgcttcgagtcccctttctcggtcgaggccatcctggcgaggcccgacccc
tgcgcgccggcggcctcccagccgtcgggctccgcctgcgtccacccggccttctggacc
gctgcttccctgtgcgccaccgggggtctgccctgggcttgcccgacatcgtggctgccc
gcctacctgagcgtaggtttttaccctgtgccagggccgcgcgtggctcccgtctgcggc
ctgctgggcttcggcgtcacagggttggagctggctcactgctcaggactctgggccttc
ccagactgggccccaacggaggacctacaggacactgagagacagcaaaagagagtccga
actatgtttaacttggagcagctggaagagttggagaaagtgtttgcaaaacagcacaat
ctggtggggaagaagagagcccagctggcagctcggctcaaacttacagagaaccaggtg
agagtctggttccagaaccgcagggtcaagtatcagaagcagcaaaagctgagggcagca
gttacatctgccgaggctgcctccctggatgagccttccagcagctccatcgccagtatc
cagagtgatgatgccgagtcaggagtggacggctga