(Linear) (Six-base) MAPSORT of: KIAA0828.seq Check: 7688 from: 1 to: 1830 KIAA0828.orf With 182 enzymes: SgfI * October 24, 2006 15:14 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 1736 1830 Size: 1736 94 AatII G_ACGT'C Cuts at: 0 420 1830 Size: 420 1410 AccI GT'mk_AC Cuts at: 0 1682 1830 Size: 1682 148 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 76 1830 Size: 76 1754 AflIII A'CryG_T Cuts at: 0 968 1830 Size: 968 862 ApaI G_GGCC'C Cuts at: 0 206 750 1805 1830 Size: 206 544 1055 25 Fragments arranged by size: 1055 544 206 25 ApoI r'AATT_y Cuts at: 0 388 1096 1830 Size: 388 708 734 Fragments arranged by size: 734 708 388 AvaI C'yCGr_G Cuts at: 0 192 198 1830 Size: 192 6 1632 Fragments arranged by size: 1632 192 6 BanI G'GyrC_C Cuts at: 0 39 115 237 290 328 342 1830 Size: 39 76 122 53 38 14 1488 Fragments arranged by size: 1488 122 76 53 39 38 14 BanII G_rGCy'C Cuts at: 0 70 199 206 651 750 1243 1805 1830 Size: 70 129 7 445 99 493 562 25 Fragments arranged by size: 562 493 445 129 99 70 25 7 BbeI G_GCGC'C Cuts at: 0 119 346 1830 Size: 119 227 1484 Fragments arranged by size: 1484 227 119 BciVI GTATCCnnnnn_n' Cuts at: 0 971 1830 Size: 971 859 BglI GCCn_nnn'nGGC Cuts at: 0 130 326 1830 Size: 130 196 1504 Fragments arranged by size: 1504 196 130 BglII A'GATC_T Cuts at: 0 1498 1830 Size: 1498 332 BlpI GC'TnA_GC Cuts at: 0 468 1830 Size: 468 1362 Bme1580I G_kGCm'C Cuts at: 0 206 750 1281 1805 1830 Size: 206 544 531 524 25 Fragments arranged by size: 544 531 524 206 25 BmgBI CAC'GTC Cuts at: 0 1455 1830 Size: 1455 375 BmrI ACTGGGnnnn_n' Cuts at: 0 744 1830 Size: 744 1086 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 140 692 1031 1830 Size: 140 552 339 799 Fragments arranged by size: 799 552 339 140 Bpu10I CC'TnA_GC Cuts at: 0 64 1573 1830 Size: 64 1509 257 Fragments arranged by size: 1509 257 64 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 635 1487 1830 Size: 635 852 343 Fragments arranged by size: 852 635 343 BsaI GGTCTCn'nnnn_ Cuts at: 0 137 1830 Size: 137 1693 BsaHI Gr'CG_yC Cuts at: 0 116 247 343 417 1830 Size: 116 131 96 74 1413 Fragments arranged by size: 1413 131 116 96 74 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 1012 1830 Size: 1012 818 BseYI C'CCAG_C Cuts at: 0 1042 1830 Size: 1042 788 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 28 1830 Size: 28 1802 BsiEI CG_ry'CG Cuts at: 0 107 1830 Size: 107 1723 BsiHKAI G_wGCw'C Cuts at: 0 103 651 741 1391 1604 1830 Size: 103 548 90 650 213 226 Fragments arranged by size: 650 548 226 213 103 90 Bsp1286I G_dGCh'C Cuts at: 0 70 103 199 206 651 741 750 1243 Size: 70 33 96 7 445 90 9 493 Cuts at: 1243 1281 1391 1604 1805 1830 Size: 38 110 213 201 25 Fragments arranged by size: 493 445 213 201 110 96 90 70 38 33 25 9 7 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 1736 1830 Size: 1736 94 BsrBI CCG'CTC Cuts at: 0 174 214 1830 Size: 174 40 1616 Fragments arranged by size: 1616 174 40 BsrGI T'GTAC_A Cuts at: 0 1357 1830 Size: 1357 473 BstEII G'GTnAC_C Cuts at: 0 1377 1830 Size: 1377 453 BstXI CCAn_nnnn'nTGG Cuts at: 0 684 1701 1782 1830 Size: 684 1017 81 48 Fragments arranged by size: 1017 684 81 48 BstYI r'GATC_y Cuts at: 0 362 933 1498 1830 Size: 362 571 565 332 Fragments arranged by size: 571 565 362 332 Bsu36I CC'TnA_GG Cuts at: 0 44 149 242 1658 1830 Size: 44 105 93 1416 172 Fragments arranged by size: 1416 172 105 93 44 BtgI C'CryG_G Cuts at: 0 23 110 119 167 1235 1830 Size: 23 87 9 48 1068 595 Fragments arranged by size: 1068 595 87 48 23 9 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 491 1830 Size: 491 1339 BtsI GCAGTG_nn' Cuts at: 0 552 701 1610 1830 Size: 552 149 909 220 Fragments arranged by size: 909 552 220 149 ClaI AT'CG_AT Cuts at: 0 875 1830 Size: 875 955 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 0 393 428 1830 Size: 393 35 1402 Fragments arranged by size: 1402 393 35 DrdI GACnn_nn'nnGTC Cuts at: 0 331 1830 Size: 331 1499 EaeI y'GGCC_r Cuts at: 0 104 251 1715 1830 Size: 104 147 1464 115 Fragments arranged by size: 1464 147 115 104 EagI C'GGCC_G Cuts at: 0 104 1830 Size: 104 1726 EarI CTCTTCn'nnn_ Cuts at: 0 585 637 1830 Size: 585 52 1193 Fragments arranged by size: 1193 585 52 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 94 1830 Size: 94 1736 EcoICRI GAG'CTC Cuts at: 0 649 1830 Size: 649 1181 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 76 140 692 1031 1830 Size: 76 64 552 339 799 Fragments arranged by size: 799 552 339 76 64 EcoO109I rG'GnC_Cy Cuts at: 0 60 202 309 746 1802 1830 Size: 60 142 107 437 1056 28 Fragments arranged by size: 1056 437 142 107 60 28 EcoRI G'AATT_C Cuts at: 0 388 1830 Size: 388 1442 HaeII r_GCGC'y Cuts at: 0 119 346 1830 Size: 119 227 1484 Fragments arranged by size: 1484 227 119 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 67 99 490 522 665 697 1830 Size: 67 32 391 32 143 32 1133 Fragments arranged by size: 1133 391 143 67 32 32 32 HincII GTy'rAC Cuts at: 0 1509 1830 Size: 1509 321 KasI G'GCGC_C Cuts at: 0 115 342 1830 Size: 115 227 1488 Fragments arranged by size: 1488 227 115 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 1356 1463 1830 Size: 1356 107 367 Fragments arranged by size: 1356 367 107 MscI TGG'CCA Cuts at: 0 1717 1830 Size: 1717 113 MspA1I CmG'CkG Cuts at: 0 25 169 288 472 1830 Size: 25 144 119 184 1358 Fragments arranged by size: 1358 184 144 119 25 NarI GG'CG_CC Cuts at: 0 116 343 1830 Size: 116 227 1487 Fragments arranged by size: 1487 227 116 NcoI C'CATG_G Cuts at: 0 119 1235 1830 Size: 119 1116 595 Fragments arranged by size: 1116 595 119 NspI r_CATG'y Cuts at: 0 972 1830 Size: 972 858 PasI CC'CwG_GG Cuts at: 0 512 1830 Size: 512 1318 PciI A'CATG_T Cuts at: 0 968 1830 Size: 968 862 PpuMI rG'GwC_Cy Cuts at: 0 60 1830 Size: 60 1770 PsiI TTA'TAA Cuts at: 0 953 1830 Size: 953 877 PspOMI G'GGCC_C Cuts at: 0 202 746 1801 1830 Size: 202 544 1055 29 Fragments arranged by size: 1055 544 202 29 SacI G_AGCT'C Cuts at: 0 651 1830 Size: 651 1179 SacII CC_GC'GG Cuts at: 0 26 170 1830 Size: 26 144 1660 Fragments arranged by size: 1660 144 26 ScaI AGT'ACT Cuts at: 0 1544 1830 Size: 1544 286 SfcI C'TryA_G Cuts at: 0 462 1821 1830 Size: 462 1359 9 Fragments arranged by size: 1359 462 9 SfoI GGC'GCC Cuts at: 0 117 344 1830 Size: 117 227 1486 Fragments arranged by size: 1486 227 117 SmaI CCC'GGG Cuts at: 0 194 1830 Size: 194 1636 SmlI C'TyrA_G Cuts at: 0 650 1502 1830 Size: 650 852 328 Fragments arranged by size: 852 650 328 SrfI GCCC'GGGC Cuts at: 0 194 1830 Size: 194 1636 StyI C'CwwG_G Cuts at: 0 35 119 1235 1830 Size: 35 84 1116 595 Fragments arranged by size: 1116 595 84 35 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 724 1830 Size: 724 1106 TatI w'GTAC_w Cuts at: 0 1357 1542 1830 Size: 1357 185 288 Fragments arranged by size: 1357 288 185 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 1038 1070 1163 1195 1830 Size: 1038 32 93 32 635 Fragments arranged by size: 1038 635 93 32 32 Tth111I GACn'n_nGTC Cuts at: 0 1081 1830 Size: 1081 749 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 1389 1481 1830 Size: 1389 92 349 Fragments arranged by size: 1389 349 92 XmaI C'CCGG_G Cuts at: 0 192 1830 Size: 192 1638 XmnI GAAnn'nnTTC Cuts at: 0 1127 1830 Size: 1127 703 ZraI GAC'GTC Cuts at: 0 418 1830 Size: 418 1412 Enzymes that do cut: AarI AatII AccI AcuI AflIII ApaI ApoI AvaI BanI BanII BbeI BciVI BglI BglII BlpI Bme1580I BmgBI BmrI BpmI Bpu10I BpuEI BsaI BsaHI BseRI BseYI BsgI BsiEI BsiHKAI Bsp1286I BspMI BsrBI BsrGI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI HaeII Hin4I HincII KasI MmeI MscI MspA1I NarI NcoI NspI PasI PciI PpuMI PsiI PspOMI SacI SacII ScaI SfcI SfoI SmaI SmlI SrfI StyI TaqII TatI TstI Tth111I XcmI XmaI XmnI ZraI Enzymes that do not cut: Acc65I AclI AfeI AflII AgeI AhdI AleI AlfI AloI AlwNI ApaLI AscI AseI AsiSI AvrII BaeI BamHI BbsI BbvCI BcgI BclI BfrBI BmtI BplI BsaAI BsaBI BsaWI BsaXI BsiWI BsmI BsmBI BspEI BspHI BsrDI BsrFI BssHII BssSI BstAPI BstBI BstZ17I DraI DraIII EcoNI EcoRV FalI FseI FspI FspAI HindIII HpaI KpnI MfeI MluI MslI NaeI NdeI NgoMIV NheI NotI NruI NsiI PacI PflMI PfoI PmeI PmlI PpiI PshAI PspXI PsrI PstI PvuI PvuII RsrII SalI SanDI SapI SbfI SexAI SfiI SgfI SgrAI SnaBI SpeI SphI SspI StuI SwaI XbaI XhoI