GENSCAN 1.0	Date run:  3-Nov-116	Time: 02:56:56

Sequence gi568815578r:49805622_50008490 : 202869 bp : 47.55% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   7229   7327   99  2  0   87   64    97 0.913   6.43
 1.02 Intr +   9387   9568  182  0  2  101   36   163 0.936  11.91
 1.03 Intr +  17440  17520   81  2  0   98   97    15 0.801   3.01
 1.04 Intr +  24155  24370  216  0  0   53   39   150 0.595   5.08
 1.05 Intr +  24480  24710  231  1  0   26    7   205 0.582   3.94
 1.06 Intr +  25089  25165   77  1  2   70   38    69 0.507  -0.67
 1.07 Term +  25318  25449  132  0  0   16   52   179 0.452   5.19
 1.08 PlyA +  27818  27823    6                               1.05

 2.02 PlyA -  28292  28287    6                               1.05
 2.01 Sngl -  39937  39542  396  1  0   78   54   253 0.959  17.15
 2.00 Prom -  42623  42584   40                              -6.36

 3.00 Prom +  47016  47055   40                              -3.16
 3.01 Init +  49297  49520  224  0  2   78  -13   153 0.776   0.26
 3.02 Intr +  49817  49960  144  2  0   95  108   189 0.958  21.00
 3.03 Intr +  53879  53982  104  2  2  110   61   -12 0.216  -1.88
 3.04 Intr +  59107  59223  117  2  0   84  111    35 0.794   5.84
 3.05 Intr +  69084  69200  117  1  0  112   89   149 0.486  17.84
 3.06 Intr +  78225  78445  221  1  2   89   49   607 0.915  54.92
 3.07 Intr +  81131  81277  147  1  0   69   59   322 0.846  27.83
 3.08 Term +  82118  82315  198  1  0  113   48   245 0.760  20.40
 3.09 PlyA +  85796  85801    6                               1.05

 4.03 PlyA -  90085  90080    6                               1.05
 4.02 Term - 101224  99998 1227  1  0  126   41  1451 0.999 135.82
 4.01 Init - 102869 102534  336  2  0   33  100   473 0.379  40.28
 4.00 Prom - 104351 104312   40                              -7.76

 5.00 Prom + 104652 104691   40                              -3.16
 5.01 Init + 106090 106231  142  0  1   68   77    52 0.510   2.40
 5.02 Term + 109865 110091  227  0  2   59   43   208 0.718  10.34
 5.03 PlyA + 110564 110569    6                               1.05

 6.00 Prom + 113019 113058   40                              -6.76
 6.01 Init + 115080 115153   74  2  2   63   68    70 0.282   1.05
 6.02 Intr + 123104 123194   91  2  1  117  117     9 0.771   6.70
 6.03 Intr + 130657 130914  258  0  0   69   49   214 0.014  13.26
 6.04 Intr + 135962 136090  129  1  0   84   48   128 0.501   9.29
 6.05 Intr + 139776 139867   92  2  2   63   94    85 0.528   5.39
 6.06 Intr + 140515 140629  115  1  1   92   89    56 0.998   6.55
 6.07 Intr + 143627 143734  108  1  0   46  103   125 0.994  10.28
 6.08 Intr + 146455 146490   36  0  0  100   41    87 0.011   3.66
 6.09 Intr + 151182 151616  435  2  0   74  -56   582 0.002  36.18
 6.10 Term + 151944 152411  468  2  0  -32   46   422 0.014  20.97
 6.11 PlyA + 152451 152456    6                               1.05

 7.00 Prom + 158030 158069   40                              -3.76
 7.01 Init + 165132 165266  135  2  0   84   93    53 0.477   5.68
 7.02 Intr + 175897 175979   83  0  2   94   77    62 0.878   4.14
 7.03 Intr + 177107 177265  159  2  0   57   46   151 0.924   6.90
 7.04 Intr + 177462 177520   59  0  2  102   96   127 0.740  13.43
 7.05 Intr + 178203 178730  528  1  0  137   92   512 0.910  49.41
 7.06 Term + 182251 182435  185  2  2  123   46   228 0.999  19.81
 7.07 PlyA + 183237 183242    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 146455 146520   66  0  0  100   53   167 0.955  12.34
S.002 Sngl + 152001 152411  411  2  0   74   46   362 0.976  26.89


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:49805622_50008490|GENSCAN_predicted_peptide_1|339_aa
XGSRKQKRVLLAPRLRTRWSWKLRRMGEKMAEEERFPNTTHEGFNVTLHTTLVVTTKLVL
PTPGKPILPVQTGEQAQQEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVS
LVRREAGQTQVMRSANSLSEGKVKKIMGDGKKGVSSGSSETGSKSPLKRIQEQSPQKRGQ
PPKNEKNVTIVESAKQAISVCYQAITKKLKICEEETGSTSIRAADSTAVNGSITDKKMGF
GGLGLMRSGIVSNLLKMGHTVTVWNRTAKKREVGNAAKMMLIVNIVQGSFIAMITEKDLC
LAIALGNAVNSLTPMAAAANQVYKRAKALDQSNNMSAVS

>gi568815578r:49805622_50008490|GENSCAN_predicted_CDS_1|1020_bp
nncggaagccggaagcaaaagcgggtcctgctagccccgcggctccgaactcggtggtcc
tggaagctccgcaggatgggggagaagatggcggaagaggagaggttccccaatacaact
catgagggtttcaatgtcaccctccacaccaccctggttgtcacgacgaaactggtgctc
ccgacccctggcaagcccatcctccccgtgcagacaggggagcaggcccagcaagaggag
cagtccagcggcatgaccattttcttcagcctccttgtcctagctatctgcatcatattg
gtgcatttactgatccgatacagattacatttcttgccagagagtgttgctgttgtttct
ttagtgaggagagaagcaggccaaactcaggtgatgagaagtgcaaacagcctgtctgaa
ggaaaagtgaagaagatcatgggagatggaaagaagggggtgtcttcgggctcttcagag
acaggctccaaatcccctctgaaaagaatccaagagcaaagtccccagaagcggggtcag
cccccaaagaatgagaagaatgtcaccatcgtggagtccgccaaacaagccatctctgtc
tgttaccaggcaatcacaaagaagttgaaaatatgtgaagaggaaactggttccacctcc
atccgggcagctgacagcacggccgtgaatggcagcatcacagacaaaaagatgggattt
gggggccttggtctcatgagaagtggaatcgtctctaacttgctaaaaatgggtcacaca
gtgactgtctggaaccgcactgccaagaaacgtgaagttggcaacgcagccaagatgatg
ctgattgtaaacatagtccaagggagcttcatagccatgatcactgagaaggatctctgc
ttagccattgcgctgggcaatgcggtcaactctctgactcccatggcagctgcagccaac
caggtgtacaaaagagccaaggcactggaccagtccaacaatatgtccgctgtgtcctga

>gi568815578r:49805622_50008490|GENSCAN_predicted_peptide_2|131_aa
MDGPEKVRKAPVGELKETKVLGHMSPSSQDTVYPLYIYQSVSRKTSQCIICEPLNITSAI
FLGKAPIYGKHWLSEPYCLKPLKQPIHHVCSSPEVRHCSPASTEHNQEGAELLLLLLLNY
TQAFKELALQT

>gi568815578r:49805622_50008490|GENSCAN_predicted_CDS_2|396_bp
atggatgggcctgagaaggttagaaaggccccagtgggggagctgaaagaaacaaaagtc
ctggggcacatgtccccgtcgtcccaggacacagtctatcctctttacatctatcagtct
gtgtccaggaagacgagtcaatgcatcatctgtgagccacttaacatcacttcagccatc
ttcctgggcaaagcacccatttatggcaaacactggctcagtgagccatactgcctgaaa
ccattaaagcagccaattcatcatgtctgctcctctccagaagtcaggcactgcagtcca
gcttccactgagcacaaccaggaaggagcagagctgctgctgctgctgctgctaaattat
acccaagcttttaaggaacttgccttacaaacatga

>gi568815578r:49805622_50008490|GENSCAN_predicted_peptide_3|423_aa
MASVFLSAVYATHPQSTLGLLLLFDTFLDLANLSAGWGRSRTAFQGAGGEGQSRGQMQEL
MGHLALAALTRGTGRFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIV
LTNTEEKYAPGSCCHLSLVIRIIPGFEEVYFINDHLQIVIYVLKHIDLRKTPSLEFGMMI
IFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFLCGLRGA
IPYALSLHLDLEPMEKRQLIGTTTIVIVLFTILLLGGSTMPLIRLMDIEDAKAHRRNKKD
VNLSKTEKMGNTVESEHLSELTEEEYEAHYIRRQDLKGFVWLDAKYLNPFFTRRLTQETP
HTKHPVASPPFHGPAPDALTAWLCLSTQDLHHGRIQMKTLTNKWYEEVRQGPSGSEDDEQ
ELL

>gi568815578r:49805622_50008490|GENSCAN_predicted_CDS_3|1272_bp
atggcctcagtgtttctctcggctgtctacgccactcacccccaaagcacactggggttg
ctgctgctttttgacactttcttagatcttgcaaatctgagtgcaggctggggtcggtca
cggacagcattccaaggggctggtggcgaggggcagagcagaggtcagatgcaggagctc
atgggccatttggctctagctgctctgacccgtggaactgggcgttttgcgtttggctcc
ctaatatctgctgtcgatccagtggccactattgccattttcaatgcacttcatgtggac
cccgtgctcaacatgctggtctttggagaaagtattctcaacgatgcagtctccattgtt
ctgaccaatacagaagaaaaatatgctcctgggagctgttgtcacctttccttggttatc
agaatcatacctggttttgaagaggtatacttcataaacgatcatctccaaattgtcatt
tacgtgctgaagcatattgacttgaggaaaacgccttccttggagtttggcatgatgatc
atttttgcttatctgccttatgggcttgcagaaggaatctcactctcaggcatcatggcc
atccttttctcaggcatcgtgatgtcccactacacgcaccataacctctccccagtcacc
cagatcctcatgcagcagaccctccgcaccgtggccttcttatgtggcctgcggggagcc
atcccctatgccctgagcctacacctggacctggagcccatggagaagcggcagctcatc
ggcaccaccaccatcgtcatcgtgctcttcaccatcctgctgctgggcggcagcaccatg
cccctcattcgcctcatggacatcgaggacgccaaggcacaccgcaggaacaagaaggac
gtcaacctcagcaagactgagaagatgggcaacactgtggagtcggagcacctgtcggag
ctcacggaggaggagtacgaggcccactacatcaggcggcaggaccttaagggcttcgtg
tggctggacgccaagtacctgaaccccttcttcactcggaggctgacgcaggagacaccc
cacacaaaacacccagtagcatcccctcccttccatggccctgcccctgacgccctgacg
gcttggttgtgtctctcgacccaggacctgcaccacgggcgcatccagatgaaaactctc
accaacaagtggtacgaggaggtacgccagggcccctccggctccgaggacgacgagcag
gagctgctctga

>gi568815578r:49805622_50008490|GENSCAN_predicted_peptide_4|520_aa
MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR

>gi568815578r:49805622_50008490|GENSCAN_predicted_CDS_4|1563_bp
atggggaagcccagttcaatggatactaaattcaaggatgacttatttcggaagtacgtg
cagttccatgagagcaaagtggataccaccaccagcaggcagcggcctggcagcgatgag
tgcctgcgggtggcagcctcaaccctgctcagcctgcacaaggtggatcccttttatcga
ttccggctgatccagttctatgaggtggtggagagctccttgcgctcgctcagctcctct
agcctgcgggctctgcacggcgccttcagcatgctggagacggtgggcatcaacctcttc
ctctacccgtggaagaaggaattcagaagcatcaagacctacacgggcccttttgtttat
tatgtcaagtcgacattactggaagaggacatccgagccatcctgagctgcatgggctac
acacctgagctgggcactgcatacaagctcagagagctcgtggagaccctccaggtgaag
atggtctcctttgagctctttctggccaaagtcgagtgtgagcagatgctagaaatccac
tcacaagtgaaggacaagggctactccgagctggacattgtgagcgagcgcaagagcagt
gcagaggatgtgcgcggctgctcggacgccctgcggcggcgggcagagggccgggagcac
ctgacggcctccatgtcacgagtggcactccagaagtcggccagcgagcgggcggccaag
gactactacaagccccgcgtgaccaagccctcgaggtcagtggatgcctatgacagctac
tgggagagccggaagccacccctgaaggcctcattgagtcttcggaaggagcctgtggca
acggatgtgggggacgacctcaaggatgagatcatccgcccatccccttcgctgctgacc
atggccagctccccccacggcagcccggatgtgcttccacccgcctcccccagcaacggc
ccggccctgctgcgcggtacctacttctccactcaggatgacgtggatctgtacacagac
tctgaacccagggccacctaccgtcggcaggatgctctgcggccggatgtgtggctgctc
agaaacgatgcccactccctctaccacaagcgctcgccccctgccaaagagtccgccctc
tccaagtgccaaagctgcgggctgtcctgcagctcctccctctgccagcgctgtgacagc
ctgctcacctgtcctccagcttccaagcccagcgccttccccagcaaggcctcgactcat
gacagcctggcccacggggcatctctgcgggagaagtacccaggccagactcagggcctc
gaccgcctcccgcaccttcactccaaatccaagccctccaccacgcccacttcccgctgt
ggcttctgcaaccgcccaggcgccaccaacacctgcacccagtgttcaaaagtctcatgt
gacgcctgcctcagcgcttaccattatgacccctgctacaaaaagagtgagctgcacaag
ttcatgcccaacaaccagctgaactacaagtccacccagctctcccatctcgtgtacaga
tag

>gi568815578r:49805622_50008490|GENSCAN_predicted_peptide_5|122_aa
MDAAKDVCIHDAITLVSHWYLPRILGDQLESKETGSERWHEVRQVAQGVLRPVPGGQQRP
GNTRPGNDVTMRRARREGGPRLRAGSGKRSMPAADGDYNPEAEDKAEGRRARTKPAEPHF
GA

>gi568815578r:49805622_50008490|GENSCAN_predicted_CDS_5|369_bp
atggatgctgcaaaggatgtctgcattcacgatgccatcactttagtttctcattggtac
ctcccaagaatcctgggagatcagctggagagcaaagaaacgggctcagaaagatggcat
gaggtacgacaagtagctcaaggggtactgagaccagtacccgggggccagcagcgaccc
ggaaacactcggcccggaaatgatgtcaccatgaggcgggcccgaagagagggtggacca
cggctgcgcgctggctccgggaagcggtcgatgcccgcggccgacggagactacaaccca
gaggcggaggacaaagcggaaggccgaagagcgaggacgaaaccggcggaaccgcacttt
ggagcctaa

>gi568815578r:49805622_50008490|GENSCAN_predicted_peptide_6|601_aa
MVITGVWLRLCLALGARSAPCTKDGQCTVSHDGQRQEILRELERIKEPVFSSQGPLACVR
GAPRGGPPASPAPNRSPPREPRPLGLLLIGRRCAAQSGSKMAAQQRDCGGAAQLAGPAAE
ADPLGRFTCPVCLEVYEKPVQECLKPKKPVCGVCRSALAPGVRAVELERQIESTETSCHG
CRKNIRSHVATCSKYQNYIMEGVKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVE
HCKLFHSTDTKSVVCPICASMPWGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMN
QAPSYGARPVSSMVSVYAGARGSGSRISESHSTSFWGGMGSGDLAGGMAGDLAGMGGIQN
EKETMQSLNDHLASYLDRMRSLETKNWKPESKIREHLEKKGPQVRDWSHHFKTIEDLRAQ
IFTNTVDNACIVLQINNACLAADDFTIEENTTEVTTQSTEVGTAEMTHRTETCSPVLGDR
PGLHEKSEGQLGEQPEGGGGPLFPADGTAQWDTAVPGVRAGTDPGRGTVPGPGVGSPAEH
KVKLEAEITTYCRLLEDSEDFNLGDALDSRNSMQTIQKTTTRQTVDGKVVSETNDTKVLR
H

>gi568815578r:49805622_50008490|GENSCAN_predicted_CDS_6|1806_bp
atggttatcacaggagtgtggctgaggctgtgtttggccctgggtgccaggtctgcaccc
tgcactaaggatgggcaatgtacagtaagccatgatgggcagaggcaggaaatacttaga
gaactggaaagaataaaggagccggtgttctcttcgcagggcccgctcgcttgcgtcaga
ggggccccgaggggcggcccacccgctagccccgcccccaaccgctcaccgccccgcgag
ccccgccccctcggcctcctcctcatcggccgccgttgcgcggcgcagagcggcagcaag
atggcggcgcaacagcgggactgcgggggtgctgcgcagctggcggggccggcggcggag
gctgaccccctaggacgcttcacgtgtcccgtgtgcttagaggtgtacgagaagccggta
caggaatgtctgaagccgaagaagcctgtctgtggggtgtgtcgcagcgctctggcacct
ggcgtccgagccgtggagctcgagcggcagatcgagagcacagagacttcttgccatggc
tgccgtaagaatatccggtcccacgtggctacttgttccaaataccagaattacatcatg
gaaggtgtgaaggccaccattaaggatgcatctcttcagccaaggaatgttccaaaccgt
tacacctttccttgtccttactgtcctgagaagaactttgatcaggaaggacttgtggaa
cactgcaaattattccatagcacggataccaaatctgtggtttgtccgatatgtgcctcg
atgccctggggagaccccaactaccgcagcgccaacttcagagagcacatccagcgccgg
caccggttttcttatgacacttttgtggattatgatgttgatgaagaggacatgatgaat
caggcgcccagctatggcgcccggccggtcagcagtatggttagcgtctatgcaggtgcc
cggggctctggttcccggatctccgagtcccactccaccagcttctggggcggcatgggg
tccggggacctggccggggggatggctggggatctggcaggaatgggaggcatccagaac
gagaaggagaccatgcaaagcctgaacgaccatctggcctcctacctggacagaatgagg
agcctggagaccaagaactggaagccggagagcaaaatccgggagcacctggagaagaag
ggaccccaggtcagagactggagccatcacttcaaaaccatcgaggacctgagggctcag
atcttcacaaatactgtggacaatgcctgcattgttctgcagatcaacaatgcctgtctt
gctgctgatgactttacaattgaggagaacactacagaagtcaccacgcagtccaccgag
gttggaactgctgagatgactcacagaactgagacatgcagtccagtccttggagatcga
cctggactccatgagaaatctgaaggccagcttggagaacagcctgagggaggtggaggc
ccgctatttcctgcagatggaacagctcagtgggatactgctgtacctggagtcagagct
ggcacagacccaggcagagggacagtgccaggcccaggagtaggaagccctgctgaacat
aaggtcaagctggaggctgagatcaccacctactgccgcctgctggaagacagcgaggac
ttcaatcttggtgatgccctggacagccgcaactccatgcaaaccatccaaaagaccacc
acccgccagacagtggatggcaaagtggtgtctgagaccaacgacaccaaagttctgaga
cattaa

>gi568815578r:49805622_50008490|GENSCAN_predicted_peptide_7|382_aa
MERAGLYQCSLMGKGPRPETVCEQVCVYEPLSPPTLQVPGDSLGKLEPGEDDFVHGCHTR
HQVTKQTVVLPFSPSTGDDPRCASEPRLGGVPARALTATRREPGQQPAHLLGEWPSAETS
LRLARRKPSDPNRKPNYSELQDSNPEFTFQQPYDQAHLLAAIPPPEILNPTASLPMLIWD
SVLAPQAQPIAWASLRLQESPRVAELTSLSDEDSGKGSQPPSPPSPAPSSFSSTSVSSLE
AEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRSHTLPCVC
GTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQACA
RTFSRMSLLHKHQESGCSGCPR

>gi568815578r:49805622_50008490|GENSCAN_predicted_CDS_7|1149_bp
atggagagagcagggctctatcagtgcagtctgatgggtaaggggcctaggcccgagaca
gtctgcgagcaagtgtgcgtgtatgagcccctgagcccgcccaccctgcaagtgcctgga
gactcactggggaagctagaaccaggggaggacgattttgttcacggctgtcacacccgg
caccaagtgactaaacagacagtagttctgcccttcagccccagcaccggggacgacccg
cgctgcgccagcgaaccccgcctcggaggagtccccgcccgggctctcaccgccacgcgg
cgcgagcccggccagcagccggcgcacctgctcggggagtggccttcggcggagacgagc
ctccgattggcgcggaggaagccctccgaccccaatcggaagcctaactacagcgagctg
caggactctaatccagagtttaccttccagcagccctacgaccaggcccacctgctggca
gccatcccacctccggagatcctcaaccccaccgcctcgctgccaatgctcatctgggac
tctgtcctggcgccccaagcccagccaattgcctgggcctcccttcggctccaggagagt
cccagggtggcagagctgacctccctgtcagatgaggacagtgggaaaggctcccagccc
cccagcccaccctcaccggctccttcgtccttctcctctacttcagtctcttccttggag
gccgaggcctatgctgccttcccaggcttgggccaagtgcccaagcagctggcccagctc
tctgaggccaaggatctccaggctcgaaaggccttcaactgcaaatactgcaacaaggaa
tacctcagcctgggtgccctcaagatgcacatccgaagccacacgctgccctgcgtctgc
ggaacctgcgggaaggccttctctaggccctggctgctacaaggccatgtccggacccac
actggcgagaagcccttctcctgtccccactgcagccgtgccttcgctgaccgctccaac
ctgcgggcccacctccagacccactcagatgtcaagaagtaccagtgccaggcgtgtgct
cggaccttctcccgaatgtccctgctccacaagcaccaagagtccggctgctcaggatgt
ccccgctga