FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0752, 310 aa
  1>>>pF1KSDA0752 310 - 310 aa - 310 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7894+/-0.000802; mu= 10.0911+/- 0.048
 mean_var=114.5061+/-22.286, 0's: 0 Z-trim(111.6): 10  B-trim: 0 in 0/53
 Lambda= 0.119856
 statistics sampled from 12477 (12485) to 12477 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.384), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS34305.1 FAM153A gene_id:285596|Hs108|chr5      ( 310) 2013 358.4 4.1e-99
CCDS43401.2 FAM153B gene_id:202134|Hs108|chr5      ( 310) 1996 355.4 3.2e-98


>>CCDS34305.1 FAM153A gene_id:285596|Hs108|chr5           (310 aa)
 initn: 2013 init1: 2013 opt: 2013  Z-score: 1892.8  bits: 358.4 E(32554): 4.1e-99
Smith-Waterman score: 2013; 99.0% identity (99.4% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KSD MVDKDTERDIEMKRQLRRLRELHLYSTWKKYQEAMKTSLGVPQRERDEGSLGKPLCPPEI
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS34 MVDKDTERDIEMKRQLRRLRELHLYSTWKKYQEAMKTSLGVPQCERDEGSLGKPLCPPEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LSETLPGSVKKRVCFPSEDHLEEFIAEHLPEASNQSLLTVAHADAGTQTNGDLEDLEEHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LSETLPGSVKKRVCFPSEDHLEEFIAEHLPEASNQSLLTVAHADAGTQTNGDLEDLEEHG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PGQTVSEEATEVHMMEGDPDTLAELLIRDVLQELSSYNGEEEDPEEVKTSLGVPQRGDLE
       ::::::::::::: ::::::::::.:::::::::::::::::::::::::::::::::::
CCDS34 PGQTVSEEATEVHTMEGDPDTLAEFLIRDVLQELSSYNGEEEDPEEVKTSLGVPQRGDLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DLEEHVPGQTVSEEATGVHMMQVDPATLAKSDLEDLEEHVPEQTVSEEATGVHMMQVDPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DLEEHVPGQTVSEEATGVHMMQVDPATLAKSDLEDLEEHVPEQTVSEEATGVHMMQVDPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TLAKQLEDSTITGSHQQMSASPSSAPAEEATEKTKVEEEVKTRKPKKKTRKPSKKSRWNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TLAKQLEDSTITGSHQQMSASPSSAPAEEATEKTKVEEEVKTRKPKKKTRKPSKKSRWNV
              250       260       270       280       290       300

              310
pF1KSD LKCWDIFNIF
       ::::::::::
CCDS34 LKCWDIFNIF
              310

>>CCDS43401.2 FAM153B gene_id:202134|Hs108|chr5           (310 aa)
 initn: 1996 init1: 1996 opt: 1996  Z-score: 1876.9  bits: 355.4 E(32554): 3.2e-98
Smith-Waterman score: 1996; 98.4% identity (98.7% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KSD MVDKDTERDIEMKRQLRRLRELHLYSTWKKYQEAMKTSLGVPQRERDEGSLGKPLCPPEI
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS43 MVDKDTERDIEMKRQLRRLRELHLYSTWKKYQEAMKTSLGVPQCERDEGSLGKPLCPPEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LSETLPGSVKKRVCFPSEDHLEEFIAEHLPEASNQSLLTVAHADAGTQTNGDLEDLEEHG
       ::::::::::::::::::::::::::::::::::::::::::::.: :::::::::::::
CCDS43 LSETLPGSVKKRVCFPSEDHLEEFIAEHLPEASNQSLLTVAHADTGIQTNGDLEDLEEHG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PGQTVSEEATEVHMMEGDPDTLAELLIRDVLQELSSYNGEEEDPEEVKTSLGVPQRGDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PGQTVSEEATEVHMMEGDPDTLAELLIRDVLQELSSYNGEEEDPEEVKTSLGVPQRGDLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DLEEHVPGQTVSEEATGVHMMQVDPATLAKSDLEDLEEHVPEQTVSEEATGVHMMQVDPA
       ::::::::::::::::::::::::::: ::::::::::::: ::::::::::::::::::
CCDS43 DLEEHVPGQTVSEEATGVHMMQVDPATPAKSDLEDLEEHVPGQTVSEEATGVHMMQVDPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TLAKQLEDSTITGSHQQMSASPSSAPAEEATEKTKVEEEVKTRKPKKKTRKPSKKSRWNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TLAKQLEDSTITGSHQQMSASPSSAPAEEATEKTKVEEEVKTRKPKKKTRKPSKKSRWNV
              250       260       270       280       290       300

              310
pF1KSD LKCWDIFNIF
       ::::::::::
CCDS43 LKCWDIFNIF
              310




310 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:54:25 2016 done: Thu Nov  3 02:54:25 2016
 Total Scan time:  2.750 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]