FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0741, 1220 aa
  1>>>pF1KSDA0741 1220 - 1220 aa - 1220 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 15.4788+/-0.00149; mu= -22.8873+/- 0.090
 mean_var=693.5580+/-141.903, 0's: 0 Z-trim(111.9): 68  B-trim: 0 in 0/54
 Lambda= 0.048700
 statistics sampled from 12708 (12752) to 12708 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.392), width:  16
 Scan time:  4.320

The best scores are:                                      opt bits E(32554)
CCDS42721.1 EIF5B gene_id:9669|Hs108|chr2          (1220) 7810 565.3 3.3e-160


>>CCDS42721.1 EIF5B gene_id:9669|Hs108|chr2               (1220 aa)
 initn: 7810 init1: 7810 opt: 7810  Z-score: 2989.8  bits: 565.3 E(32554): 3.3e-160
Smith-Waterman score: 7810; 99.9% identity (99.9% similar) in 1220 aa overlap (1-1220:1-1220)

               10        20        30        40        50        60
pF1KSD MGKKQKNKSEDSTKDDIDLDALAAEIEGAGAAKEQEPQKSKGKKKKEKKKQDFDEDDILK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MGKKQKNKSEDSTKDDIDLDALAAEIEGAGAAKEQEPQKSKGKKKKEKKKQDFDEDDILK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ELEGLSLEAQGIKADRETVAVKPTENNEEEFTSKDKKKKGQKGKKQSFDDNDSEELEDKD
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ELEELSLEAQGIKADRETVAVKPTENNEEEFTSKDKKKKGQKGKKQSFDDNDSEELEDKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SKSKKTAKPKVEMYSGSDDDDDFNKLPKKAKGKAQKSNKKWDGSEEDEDNSKKIKERSRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SKSKKTAKPKVEMYSGSDDDDDFNKLPKKAKGKAQKSNKKWDGSEEDEDNSKKIKERSRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NSSGESGDESDEFLQSRKGQKKNQKNKPGPNIESGNEDDDASFKIKTVAQKKAEKKERER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NSSGESGDESDEFLQSRKGQKKNQKNKPGPNIESGNEDDDASFKIKTVAQKKAEKKERER
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KKRDEEKAKLRKLKEKEELETGKKDQSKQKESQRKFEEETVKSKVTVDTGVIPASEEKAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KKRDEEKAKLRKLKEKEELETGKKDQSKQKESQRKFEEETVKSKVTVDTGVIPASEEKAE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD TPTAAEDDNEGDKKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TPTAAEDDNEGDKKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD EEEERIKRLEELEAKRKEEERLEQEKRERKKQKEKERKERLKKEGKLLTKSQREARARAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EEEERIKRLEELEAKRKEEERLEQEKRERKKQKEKERKERLKKEGKLLTKSQREARARAE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD ATLKLLQAQGVEVPSKDSLPKKRPIYEDKKRKKIPQQLESKEVSESMELCAAVEVMEQGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ATLKLLQAQGVEVPSKDSLPKKRPIYEDKKRKKIPQQLESKEVSESMELCAAVEVMEQGV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD PEKEETPPPVEPEEEEDTEDAGLDDWEAMASDEETEKVEGNKVHIEVKENPEEEEEEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PEKEETPPPVEPEEEEDTEDAGLDDWEAMASDEETEKVEGNKVHIEVKENPEEEEEEEEE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD EEEDEESEEEEEEEGESEGSEGDEEDEKVSDEKDSGKTLDKKPSKEMSSDSEYDSDDDRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EEEDEESEEEEEEEGESEGSEGDEEDEKVSDEKDSGKTLDKKPSKEMSSDSEYDSDDDRT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD KEERAYDKAKRRIEKRRLEHSKNVNTEKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KEERAYDKAKRRIEKRRLEHSKNVNTEKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD AGGITQQIGATNVPLEAINEQTKMIKNFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AGGITQQIGATNVPLEAINEQTKMIKNFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLC
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD DIAILVVDIMHGLEPQTIESINLLKSKKCPFIVALNKIDRLYDWKKSPDSDVAATLKKQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DIAILVVDIMHGLEPQTIESINLLKSKKCPFIVALNKIDRLYDWKKSPDSDVAATLKKQK
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD KNTKDEFEERAKAIIVEFAQQGLNAALFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KNTKDEFEERAKAIIVEFAQQGLNAALFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD LTQTMLSKRLAHCEELRAQVMEVKALPGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LTQTMLSKRLAHCEELRAQVMEVKALPGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQ
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD IRGLLLPPPMKELRVKNQYEKHKEVEAAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IRGLLLPPPMKELRVKNQYEKHKEVEAAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLK
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD DELIHELKQTLNAIKLEEKGVYVQASTLGSLEALLEFLKTSEVPYAGINIGPVHKKDVMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DELIHELKQTLNAIKLEEKGVYVQASTLGSLEALLEFLKTSEVPYAGINIGPVHKKDVMK
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD ASVMLEHDPQYAVILAFDVRIERDAQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ASVMLEHDPQYAVILAFDVRIERDAQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQK
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD QEEFKHIAVFPCKIKILPQYIFNSRDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QEEFKHIAVFPCKIKILPQYIFNSRDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTS
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KSD IEINHKQVDVAKKGQEVCVKIEPIPGESPKMFGRHFEATDILVSKISRQSIDALKDWFRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IEINHKQVDVAKKGQEVCVKIEPIPGESPKMFGRHFEATDILVSKISRQSIDALKDWFRD
             1150      1160      1170      1180      1190      1200

             1210      1220
pF1KSD EMQKSDWQLIVELKKVFEII
       ::::::::::::::::::::
CCDS42 EMQKSDWQLIVELKKVFEII
             1210      1220




1220 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:52:55 2016 done: Thu Nov  3 02:52:56 2016
 Total Scan time:  4.320 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]