Result of FASTA (omim) for pF1KSDA0479
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0479, 307 aa
  1>>>pF1KSDA0479 307 - 307 aa - 307 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5607+/-0.000416; mu= 13.9539+/- 0.026
 mean_var=66.0540+/-13.428, 0's: 0 Z-trim(111.3): 44  B-trim: 482 in 1/49
 Lambda= 0.157806
 statistics sampled from 19857 (19901) to 19857 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.233), width:  16
 Scan time:  5.690

The best scores are:                                      opt bits E(85289)
NP_055854 (OMIM: 608701) nicotinamide/nicotinic ac ( 307) 2073 481.0 1.3e-135
NP_733820 (OMIM: 608701) nicotinamide/nicotinic ac ( 302) 1890 439.3 4.5e-123
XP_016861831 (OMIM: 608702) PREDICTED: nicotinamid ( 170)  435 108.0 1.4e-23
XP_016861832 (OMIM: 608702) PREDICTED: nicotinamid ( 170)  435 108.0 1.4e-23
XP_016861830 (OMIM: 608702) PREDICTED: nicotinamid ( 170)  435 108.0 1.4e-23
XP_016861833 (OMIM: 608702) PREDICTED: nicotinamid ( 170)  435 108.0 1.4e-23
XP_016857597 (OMIM: 608553,608700) PREDICTED: nico ( 150)  433 107.5 1.7e-23
XP_016861824 (OMIM: 608702) PREDICTED: nicotinamid ( 252)  435 108.0   2e-23
XP_016861826 (OMIM: 608702) PREDICTED: nicotinamid ( 252)  435 108.0   2e-23
NP_001307441 (OMIM: 608702) nicotinamide/nicotinic ( 252)  435 108.0   2e-23
NP_001307440 (OMIM: 608702) nicotinamide/nicotinic ( 252)  435 108.0   2e-23
XP_016861825 (OMIM: 608702) PREDICTED: nicotinamid ( 252)  435 108.0   2e-23
XP_011540273 (OMIM: 608553,608700) PREDICTED: nico ( 148)  426 105.9 5.2e-23
NP_001284708 (OMIM: 608553,608700) nicotinamide/ni ( 160)  426 105.9 5.5e-23
XP_016857596 (OMIM: 608553,608700) PREDICTED: nico ( 279)  428 106.5 6.6e-23
NP_001284707 (OMIM: 608553,608700) nicotinamide/ni ( 279)  428 106.5 6.6e-23
NP_073624 (OMIM: 608553,608700) nicotinamide/nicot ( 279)  428 106.5 6.6e-23
XP_016861820 (OMIM: 608702) PREDICTED: nicotinamid ( 346)  276 71.9 2.1e-12
XP_016861823 (OMIM: 608702) PREDICTED: nicotinamid ( 346)  276 71.9 2.1e-12
XP_016861818 (OMIM: 608702) PREDICTED: nicotinamid ( 346)  276 71.9 2.1e-12
XP_016861822 (OMIM: 608702) PREDICTED: nicotinamid ( 346)  276 71.9 2.1e-12
XP_016861821 (OMIM: 608702) PREDICTED: nicotinamid ( 346)  276 71.9 2.1e-12
XP_016861817 (OMIM: 608702) PREDICTED: nicotinamid ( 346)  276 71.9 2.1e-12
NP_001307439 (OMIM: 608702) nicotinamide/nicotinic ( 346)  276 71.9 2.1e-12
XP_016861819 (OMIM: 608702) PREDICTED: nicotinamid ( 346)  276 71.9 2.1e-12
NP_835471 (OMIM: 608702) nicotinamide/nicotinic ac ( 215)  270 70.4 3.5e-12
XP_011511093 (OMIM: 608702) PREDICTED: nicotinamid ( 215)  270 70.4 3.5e-12
XP_016861827 (OMIM: 608702) PREDICTED: nicotinamid ( 215)  270 70.4 3.5e-12
XP_011511092 (OMIM: 608702) PREDICTED: nicotinamid ( 215)  270 70.4 3.5e-12
XP_016861828 (OMIM: 608702) PREDICTED: nicotinamid ( 194)  252 66.3 5.5e-11
XP_016861829 (OMIM: 608702) PREDICTED: nicotinamid ( 194)  252 66.3 5.5e-11
NP_001307442 (OMIM: 608702) nicotinamide/nicotinic ( 142)  216 58.1 1.2e-08
NP_001186976 (OMIM: 608702) nicotinamide/nicotinic ( 163)  216 58.1 1.4e-08


>>NP_055854 (OMIM: 608701) nicotinamide/nicotinic acid m  (307 aa)
 initn: 2073 init1: 2073 opt: 2073  Z-score: 2555.6  bits: 481.0 E(85289): 1.3e-135
Smith-Waterman score: 2073; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NLGTVMRYEEIELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NLGTVMRYEEIELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD MNHSSILRKYKNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYLSQPVIDYILKSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MNHSSILRKYKNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYLSQPVIDYILKSQ
              250       260       270       280       290       300

              
pF1KSD LYINASG
       :::::::
NP_055 LYINASG
              

>>NP_733820 (OMIM: 608701) nicotinamide/nicotinic acid m  (302 aa)
 initn: 1890 init1: 1890 opt: 1890  Z-score: 2330.6  bits: 439.3 E(85289): 4.5e-123
Smith-Waterman score: 1890; 98.6% identity (99.3% similar) in 283 aa overlap (25-307:20-302)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
                               . . ::::::::::::::::::::::::::::::::
NP_733      MEIQELEEIQACQGLWEVFVTLSERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_733 VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KSD SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_733 SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KSD NLGTVMRYEEIELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_733 NLGTVMRYEEIELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRI
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KSD MNHSSILRKYKNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYLSQPVIDYILKSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_733 MNHSSILRKYKNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYLSQPVIDYILKSQ
         240       250       260       270       280       290     

              
pF1KSD LYINASG
       :::::::
NP_733 LYINASG
         300  

>>XP_016861831 (OMIM: 608702) PREDICTED: nicotinamide/ni  (170 aa)
 initn: 440 init1: 424 opt: 435  Z-score: 544.3  bits: 108.0 E(85289): 1.4e-23
Smith-Waterman score: 435; 57.7% identity (82.7% similar) in 104 aa overlap (5-108:3-106)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
           ..  :.:::::::::::. :..::: :::.::.:: . :: ::.:::.:.:::. :
XP_016   MKSRIPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDL
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       ..:.::. : .::.:.::::::::::  :  :. : .::.::.. . :            
XP_016 AASHHRVAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGK
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KSD SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
                                                                   
XP_016 ALFSTPAGILKRILQTLFEHLTGTDSGLRLRTETASPSPHLKLETGYEWSCA        
      120       130       140       150       160       170        

>>XP_016861832 (OMIM: 608702) PREDICTED: nicotinamide/ni  (170 aa)
 initn: 440 init1: 424 opt: 435  Z-score: 544.3  bits: 108.0 E(85289): 1.4e-23
Smith-Waterman score: 435; 57.7% identity (82.7% similar) in 104 aa overlap (5-108:3-106)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
           ..  :.:::::::::::. :..::: :::.::.:: . :: ::.:::.:.:::. :
XP_016   MKSRIPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDL
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       ..:.::. : .::.:.::::::::::  :  :. : .::.::.. . :            
XP_016 AASHHRVAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGK
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KSD SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
                                                                   
XP_016 ALFSTPAGILKRILQTLFEHLTGTDSGLRLRTETASPSPHLKLETGYEWSCA        
      120       130       140       150       160       170        

>>XP_016861830 (OMIM: 608702) PREDICTED: nicotinamide/ni  (170 aa)
 initn: 440 init1: 424 opt: 435  Z-score: 544.3  bits: 108.0 E(85289): 1.4e-23
Smith-Waterman score: 435; 57.7% identity (82.7% similar) in 104 aa overlap (5-108:3-106)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
           ..  :.:::::::::::. :..::: :::.::.:: . :: ::.:::.:.:::. :
XP_016   MKSRIPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDL
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       ..:.::. : .::.:.::::::::::  :  :. : .::.::.. . :            
XP_016 AASHHRVAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGK
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KSD SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
                                                                   
XP_016 ALFSTPAGILKRILQTLFEHLTGTDSGLRLRTETASPSPHLKLETGYEWSCA        
      120       130       140       150       160       170        

>>XP_016861833 (OMIM: 608702) PREDICTED: nicotinamide/ni  (170 aa)
 initn: 440 init1: 424 opt: 435  Z-score: 544.3  bits: 108.0 E(85289): 1.4e-23
Smith-Waterman score: 435; 57.7% identity (82.7% similar) in 104 aa overlap (5-108:3-106)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
           ..  :.:::::::::::. :..::: :::.::.:: . :: ::.:::.:.:::. :
XP_016   MKSRIPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDL
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       ..:.::. : .::.:.::::::::::  :  :. : .::.::.. . :            
XP_016 AASHHRVAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGK
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KSD SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
                                                                   
XP_016 ALFSTPAGILKRILQTLFEHLTGTDSGLRLRTETASPSPHLKLETGYEWSCA        
      120       130       140       150       160       170        

>>XP_016857597 (OMIM: 608553,608700) PREDICTED: nicotina  (150 aa)
 initn: 419 init1: 419 opt: 433  Z-score: 542.7  bits: 107.5 E(85289): 1.7e-23
Smith-Waterman score: 433; 43.7% identity (72.8% similar) in 151 aa overlap (1-150:1-148)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
       : .. ::.:.:::::::::::. :...:: :.::.. :::. :. ::.::: :.: :.::
XP_016 MENSEKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       . . ::.:: .::..:: :..:: ::  :  :. : .::.::.. .. .. :  .. :.:
XP_016 IPAYHRVIMAELATKNSKWVEVDTWESLQKEWKETLKVLRHHQEKLE-ASDCDHQQ-NSP
               70        80        90       100        110         

               130       140       150       160       170         
pF1KSD SMT-PVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDEN
       ..  :   .  .:: :   :....  :  ::                             
XP_016 TLERPGRKRKWTET-QDSSQKKSLEPKTKAASS                           
      120       130        140       150                           

     180       190       200       210       220       230         
pF1KSD ANLGTVMRYEEIELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDR

>>XP_016861824 (OMIM: 608702) PREDICTED: nicotinamide/ni  (252 aa)
 initn: 607 init1: 424 opt: 435  Z-score: 541.6  bits: 108.0 E(85289): 2e-23
Smith-Waterman score: 544; 37.3% identity (58.7% similar) in 303 aa overlap (5-306:3-237)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
           ..  :.:::::::::::. :..::: :::.::.:: . :: ::.:::.:.:::. :
XP_016   MKSRIPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDL
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       ..:.::. : .::.:.::::::::::  :  :. : .::.::.. . :          .:
XP_016 AASHHRVAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLR----------SP
       60        70        80        90       100                  

              130       140       150       160       170       180
pF1KSD SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
               :: : :.   ... . . :.:.                  :           
XP_016 --------PQMEGPD---HGKALFSTPAAV------------------P-----------
              110          120                                     

              190       200       210       220       230       240
pF1KSD NLGTVMRYEEIELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRI
                  ::.  ::::.:.:..:  :.::..: .. ::  ::.: : : . :    
XP_016 -----------ELK--LLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVGHDPKGY
                 130         140       150       160       170     

              250       260       270       280        290         
pF1KSD MNHSSILRKYKNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYL-SQPVIDYILKS
       . .: ::: ...:: ..:. ...    .:.:  : ::  :.:. : ::  . :: ::   
XP_016 IAESPILRMHQHNIHLAKEPVQNE---ISATYIRRAL--GQGQSVKYLIPDAVITYIKDH
         180       190          200         210       220       230

     300                     
pF1KSD QLYINASG              
        :: ..:               
XP_016 GLYTKGSTWKGKSTQSTEGKTS
              240       250  

>>XP_016861826 (OMIM: 608702) PREDICTED: nicotinamide/ni  (252 aa)
 initn: 607 init1: 424 opt: 435  Z-score: 541.6  bits: 108.0 E(85289): 2e-23
Smith-Waterman score: 544; 37.3% identity (58.7% similar) in 303 aa overlap (5-306:3-237)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
           ..  :.:::::::::::. :..::: :::.::.:: . :: ::.:::.:.:::. :
XP_016   MKSRIPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDL
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       ..:.::. : .::.:.::::::::::  :  :. : .::.::.. . :          .:
XP_016 AASHHRVAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLR----------SP
       60        70        80        90       100                  

              130       140       150       160       170       180
pF1KSD SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
               :: : :.   ... . . :.:.                  :           
XP_016 --------PQMEGPD---HGKALFSTPAAV------------------P-----------
              110          120                                     

              190       200       210       220       230       240
pF1KSD NLGTVMRYEEIELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRI
                  ::.  ::::.:.:..:  :.::..: .. ::  ::.: : : . :    
XP_016 -----------ELK--LLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVGHDPKGY
                 130         140       150       160       170     

              250       260       270       280        290         
pF1KSD MNHSSILRKYKNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYL-SQPVIDYILKS
       . .: ::: ...:: ..:. ...    .:.:  : ::  :.:. : ::  . :: ::   
XP_016 IAESPILRMHQHNIHLAKEPVQNE---ISATYIRRAL--GQGQSVKYLIPDAVITYIKDH
         180       190          200         210       220       230

     300                     
pF1KSD QLYINASG              
        :: ..:               
XP_016 GLYTKGSTWKGKSTQSTEGKTS
              240       250  

>>NP_001307441 (OMIM: 608702) nicotinamide/nicotinic aci  (252 aa)
 initn: 607 init1: 424 opt: 435  Z-score: 541.6  bits: 108.0 E(85289): 2e-23
Smith-Waterman score: 544; 37.3% identity (58.7% similar) in 303 aa overlap (5-306:3-237)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
           ..  :.:::::::::::. :..::: :::.::.:: . :: ::.:::.:.:::. :
NP_001   MKSRIPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDL
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       ..:.::. : .::.:.::::::::::  :  :. : .::.::.. . :          .:
NP_001 AASHHRVAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLR----------SP
       60        70        80        90       100                  

              130       140       150       160       170       180
pF1KSD SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
               :: : :.   ... . . :.:.                  :           
NP_001 --------PQMEGPD---HGKALFSTPAAV------------------P-----------
              110          120                                     

              190       200       210       220       230       240
pF1KSD NLGTVMRYEEIELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRI
                  ::.  ::::.:.:..:  :.::..: .. ::  ::.: : : . :    
NP_001 -----------ELK--LLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVGHDPKGY
                 130         140       150       160       170     

              250       260       270       280        290         
pF1KSD MNHSSILRKYKNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYL-SQPVIDYILKS
       . .: ::: ...:: ..:. ...    .:.:  : ::  :.:. : ::  . :: ::   
NP_001 IAESPILRMHQHNIHLAKEPVQNE---ISATYIRRAL--GQGQSVKYLIPDAVITYIKDH
         180       190          200         210       220       230

     300                     
pF1KSD QLYINASG              
        :: ..:               
NP_001 GLYTKGSTWKGKSTQSTEGKTS
              240       250  




307 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:52:41 2016 done: Thu Nov  3 01:52:42 2016
 Total Scan time:  5.690 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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