Result of FASTA (ccds) for pF1KSDA0479
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0479, 307 aa
  1>>>pF1KSDA0479 307 - 307 aa - 307 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7073+/-0.000973; mu= 13.0842+/- 0.058
 mean_var=62.4122+/-12.177, 0's: 0 Z-trim(104.3): 23  B-trim: 0 in 0/50
 Lambda= 0.162345
 statistics sampled from 7828 (7837) to 7828 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.241), width:  16
 Scan time:  2.170

The best scores are:                                      opt bits E(32554)
CCDS1353.1 NMNAT2 gene_id:23057|Hs108|chr1         ( 307) 2073 494.2 5.2e-140
CCDS1354.1 NMNAT2 gene_id:23057|Hs108|chr1         ( 302) 1890 451.4 4.1e-127
CCDS82846.1 NMNAT3 gene_id:349565|Hs108|chr3       ( 252)  435 110.6 1.3e-24
CCDS72698.1 NMNAT1 gene_id:64802|Hs108|chr1        ( 160)  426 108.4 3.7e-24
CCDS108.1 NMNAT1 gene_id:64802|Hs108|chr1          ( 279)  428 108.9 4.5e-24
CCDS3111.1 NMNAT3 gene_id:349565|Hs108|chr3        ( 215)  270 71.9 4.9e-13


>>CCDS1353.1 NMNAT2 gene_id:23057|Hs108|chr1              (307 aa)
 initn: 2073 init1: 2073 opt: 2073  Z-score: 2627.2  bits: 494.2 E(32554): 5.2e-140
Smith-Waterman score: 2073; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NLGTVMRYEEIELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NLGTVMRYEEIELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD MNHSSILRKYKNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYLSQPVIDYILKSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MNHSSILRKYKNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYLSQPVIDYILKSQ
              250       260       270       280       290       300

              
pF1KSD LYINASG
       :::::::
CCDS13 LYINASG
              

>>CCDS1354.1 NMNAT2 gene_id:23057|Hs108|chr1              (302 aa)
 initn: 1890 init1: 1890 opt: 1890  Z-score: 2395.7  bits: 451.4 E(32554): 4.1e-127
Smith-Waterman score: 1890; 98.6% identity (99.3% similar) in 283 aa overlap (25-307:20-302)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
                               . . ::::::::::::::::::::::::::::::::
CCDS13      MEIQELEEIQACQGLWEVFVTLSERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KSD SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KSD NLGTVMRYEEIELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NLGTVMRYEEIELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRI
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KSD MNHSSILRKYKNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYLSQPVIDYILKSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MNHSSILRKYKNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYLSQPVIDYILKSQ
         240       250       260       270       280       290     

              
pF1KSD LYINASG
       :::::::
CCDS13 LYINASG
         300  

>>CCDS82846.1 NMNAT3 gene_id:349565|Hs108|chr3            (252 aa)
 initn: 607 init1: 424 opt: 435  Z-score: 555.2  bits: 110.6 E(32554): 1.3e-24
Smith-Waterman score: 544; 37.3% identity (58.7% similar) in 303 aa overlap (5-306:3-237)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
           ..  :.:::::::::::. :..::: :::.::.:: . :: ::.:::.:.:::. :
CCDS82   MKSRIPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDL
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       ..:.::. : .::.:.::::::::::  :  :. : .::.::.. . :          .:
CCDS82 AASHHRVAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLR----------SP
       60        70        80        90       100                  

              130       140       150       160       170       180
pF1KSD SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
               :: : :.   ... . . :.:.                  :           
CCDS82 --------PQMEGPD---HGKALFSTPAAV------------------P-----------
              110          120                                     

              190       200       210       220       230       240
pF1KSD NLGTVMRYEEIELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRI
                  ::.  ::::.:.:..:  :.::..: .. ::  ::.: : : . :    
CCDS82 -----------ELK--LLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVGHDPKGY
                 130         140       150       160       170     

              250       260       270       280        290         
pF1KSD MNHSSILRKYKNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYL-SQPVIDYILKS
       . .: ::: ...:: ..:. ...    .:.:  : ::  :.:. : ::  . :: ::   
CCDS82 IAESPILRMHQHNIHLAKEPVQNE---ISATYIRRAL--GQGQSVKYLIPDAVITYIKDH
         180       190          200         210       220       230

     300                     
pF1KSD QLYINASG              
        :: ..:               
CCDS82 GLYTKGSTWKGKSTQSTEGKTS
              240       250  

>>CCDS72698.1 NMNAT1 gene_id:64802|Hs108|chr1             (160 aa)
 initn: 419 init1: 419 opt: 426  Z-score: 547.1  bits: 108.4 E(32554): 3.7e-24
Smith-Waterman score: 426; 47.5% identity (78.7% similar) in 122 aa overlap (1-122:1-120)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
       : .. ::.:.:::::::::::. :...:: :.::.. :::. :. ::.::: :.: :.::
CCDS72 MENSEKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       . . ::.:: .::..:: :..:: ::  :  :. : .::.::.. .. .. :  .. :.:
CCDS72 IPAYHRVIMAELATKNSKWVEVDTWESLQKEWKETLKVLRHHQEKLE-ASDCDHQQ-NSP
               70        80        90       100        110         

              130       140       150       160       170       180
pF1KSD SMTPVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENA
       ..                                                          
CCDS72 TLERPGRKRKWTETQDSSQKKSLEPKTKDGVSLYHPGWSAVA                  
      120       130       140       150       160                  

>>CCDS108.1 NMNAT1 gene_id:64802|Hs108|chr1               (279 aa)
 initn: 632 init1: 419 opt: 428  Z-score: 545.6  bits: 108.9 E(32554): 4.5e-24
Smith-Waterman score: 589; 36.0% identity (62.7% similar) in 308 aa overlap (1-306:1-258)

               10        20        30        40        50        60
pF1KSD MTETTKTHVILLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGL
       : .. ::.:.:::::::::::. :...:: :.::.. :::. :. ::.::: :.: :.::
CCDS10 MENSEKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VSSRHRLIMCQLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTP
       . . ::.:: .::..:: :..:: ::  :  :. : .::.::.. .. .. :  .. :.:
CCDS10 IPAYHRVIMAELATKNSKWVEVDTWESLQKEWKETLKVLRHHQEKLE-ASDCDHQQ-NSP
               70        80        90       100        110         

               130       140       150       160       170         
pF1KSD SMT-PVIGQPQNETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDEN
       ..  :   .  .:: :   :....  :  :.                 : :.        
CCDS10 TLERPGRKRKWTET-QDSSQKKSLEPKTKAV-----------------PKVK--------
      120       130        140                        150          

     180       190       200       210       220       230         
pF1KSD ANLGTVMRYEEIELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDR
                        ::::.:::::: .:.::.  :.  ::...:.. : : . :...
CCDS10 -----------------LLCGADLLESFAVPNLWKSEDITQIVANYGLICVTRAGNDAQK
                             160       170       180       190     

     240       250       260       270       280       290         
pF1KSD IMNHSSILRKYKNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYLSQPVI-DYILK
       .. .:..: :...:: ::.. : .    .:::: : ::..:..  . ::   .. .:: :
CCDS10 FIYESDVLWKHRSNIHVVNEWIAND---ISSTKIRRALRRGQS--IRYLVPDLVQEYIEK
         200       210       220          230         240       250

      300                           
pF1KSD SQLYINASG                    
        .:: . :                     
CCDS10 HNLYSSESEDRNAGVILAPLQRNTAEAKT
              260       270         

>>CCDS3111.1 NMNAT3 gene_id:349565|Hs108|chr3             (215 aa)
 initn: 452 init1: 269 opt: 270  Z-score: 347.5  bits: 71.9 E(32554): 4.9e-13
Smith-Waterman score: 379; 33.7% identity (55.1% similar) in 267 aa overlap (41-306:2-200)

               20        30        40        50        60        70
pF1KSD LLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGLVSSRHRLIMC
                                     . :: ::.:::.:.:::. :..:.::. : 
CCDS31                              MYQVIQGIISPVNDTYGKKDLAASHHRVAMA
                                            10        20        30 

               80        90       100       110       120       130
pF1KSD QLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTPSMTPVIGQPQ
       .::.:.::::::::::  :  :. : .::.::.. . :              .:    ::
CCDS31 RLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLR--------------SP----PQ
              40        50        60                      70       

              140       150       160       170       180       190
pF1KSD NETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENANLGTVMRYEE
        : :.   ... . . :.:.                 :                      
CCDS31 MEGPD---HGKALFSTPAAV-----------------P----------------------
               80        90                                        

              200       210       220       230       240       250
pF1KSD IELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRIMNHSSILRKY
        ::.  ::::.:.:..:  :.::..: .. ::  ::.: : : . :    . .: ::: .
CCDS31 -ELK--LLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVGHDPKGYIAESPILRMH
                100       110       120       130       140        

              260       270       280        290       300         
pF1KSD KNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYL-SQPVIDYILKSQLYINASG  
       ..:: ..:. ...    .:.:  : ::  :.:. : ::  . :: ::    :: ..:   
CCDS31 QHNIHLAKEPVQNE---ISATYIRRAL--GQGQSVKYLIPDAVITYIKDHGLYTKGSTWK
      150       160          170         180       190       200   

CCDS31 GKSTQSTEGKTS
           210     




307 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:52:41 2016 done: Thu Nov  3 01:52:41 2016
 Total Scan time:  2.170 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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