Result of FASTA (ccds) for pF1KSDA0276
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0276, 292 aa
  1>>>pF1KSDA0276 292 - 292 aa - 292 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6451+/-0.000839; mu= 13.6237+/- 0.050
 mean_var=70.4567+/-13.908, 0's: 0 Z-trim(106.9): 15  B-trim: 0 in 0/51
 Lambda= 0.152796
 statistics sampled from 9273 (9282) to 9273 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.285), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS33982.1 DCUN1D4 gene_id:23142|Hs108|chr4       ( 292) 1995 448.7 2.3e-126
CCDS75123.1 DCUN1D4 gene_id:23142|Hs108|chr4       ( 336) 1940 436.6 1.2e-122
CCDS3487.2 DCUN1D4 gene_id:23142|Hs108|chr4        ( 257) 1390 315.3 2.9e-86
CCDS8325.1 DCUN1D5 gene_id:84259|Hs108|chr11       ( 237) 1135 259.1 2.3e-69
CCDS32013.1 DCUN1D2 gene_id:55208|Hs108|chr13      ( 259)  488 116.5 2.1e-26
CCDS77862.1 DCUN1D1 gene_id:54165|Hs108|chr3       ( 244)  466 111.6 5.7e-25
CCDS3240.1 DCUN1D1 gene_id:54165|Hs108|chr3        ( 259)  466 111.7   6e-25
CCDS10592.1 DCUN1D3 gene_id:123879|Hs108|chr16     ( 304)  396 96.3 3.1e-20


>>CCDS33982.1 DCUN1D4 gene_id:23142|Hs108|chr4            (292 aa)
 initn: 1995 init1: 1995 opt: 1995  Z-score: 2382.1  bits: 448.7 E(32554): 2.3e-126
Smith-Waterman score: 1995; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)

               10        20        30        40        50        60
pF1KSD MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE
              190       200       210       220       230       240

              250       260       270       280       290  
pF1KSD QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
              250       260       270       280       290  

>>CCDS75123.1 DCUN1D4 gene_id:23142|Hs108|chr4            (336 aa)
 initn: 1940 init1: 1940 opt: 1940  Z-score: 2315.6  bits: 436.6 E(32554): 1.2e-122
Smith-Waterman score: 1940; 99.6% identity (100.0% similar) in 284 aa overlap (9-292:53-336)

                                     10        20        30        
pF1KSD                       MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDI
                                     .:::::::::::::::::::::::::::::
CCDS75 GRGRERASERGTRVRISKGLSGAGGSVRKADFQLNSHLSTLANIHKIYHTLNKLNLTEDI
             30        40        50        60        70        80  

       40        50        60        70        80        90        
pF1KSD GQDDHQTGSLRSCSSSDCFNKVMPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GQDDHQTGSLRSCSSSDCFNKVMPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEE
             90       100       110       120       130       140  

      100       110       120       130       140       150        
pF1KSD EAFSSKRCLEWFYEYAGTDDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EAFSSKRCLEWFYEYAGTDDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTL
            150       160       170       180       190       200  

      160       170       180       190       200       210        
pF1KSD QEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAK
            210       220       230       240       250       260  

      220       230       240       250       260       270        
pF1KSD CMLGLLLGKIWPLFPVFHQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CMLGLLLGKIWPLFPVFHQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVL
            270       280       290       300       310       320  

      280       290  
pF1KSD LDEFVEWYKDKQMS
       ::::::::::::::
CCDS75 LDEFVEWYKDKQMS
            330      

>>CCDS3487.2 DCUN1D4 gene_id:23142|Hs108|chr4             (257 aa)
 initn: 1390 init1: 1390 opt: 1390  Z-score: 1662.2  bits: 315.3 E(32554): 2.9e-86
Smith-Waterman score: 1671; 88.0% identity (88.0% similar) in 292 aa overlap (1-292:1-257)

               10        20        30        40        50        60
pF1KSD MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE
       :::::::::::::::::::::::::                                   
CCDS34 DYLRSFLNDSTNFKLIYRYAFDFAR-----------------------------------
              190       200                                        

              250       260       270       280       290  
pF1KSD QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
         210       220       230       240       250       

>>CCDS8325.1 DCUN1D5 gene_id:84259|Hs108|chr11            (237 aa)
 initn: 1134 init1: 1109 opt: 1135  Z-score: 1359.0  bits: 259.1 E(32554): 2.3e-69
Smith-Waterman score: 1135; 70.0% identity (85.7% similar) in 237 aa overlap (61-292:1-237)

               40        50        60             70        80     
pF1KSD KLNLTEDIGQDDHQTGSLRSCSSSDCFNKVMPPRKKRR-P----ASGDDLSAKKSRHDSM
                                     :: .:::. :    : ..: . :: . .:.
CCDS83                               MPVKKKRKSPGVAAAVAEDGGLKKCKISSY
                                             10        20        30

          90       100       110       120       130       140     
pF1KSD YRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVVGPEGMEKFCEDIGVEPENVVMLVLA
        :.   .:. . :: ::::.:: ::::::: :.::::::::::::::::::::..:::::
CCDS83 CRSQPPARLISGEEHFSSKKCLAWFYEYAGPDEVVGPEGMEKFCEDIGVEPENIIMLVLA
               40        50        60        70        80        90

         150       160       170       180       190       200     
pF1KSD WKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAR
       :::.:..::.:: .:::::::::::: ::::.: .:.::: ::: ..:: ::::::::::
CCDS83 WKLEAESMGFFTKEEWLKGMTSLQCDCTEKLQNKFDFLRSQLNDISSFKNIYRYAFDFAR
              100       110       120       130       140       150

         210       220       230       240       250       260     
pF1KSD EKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLEQSKYKVINKDQWCNVLEFSRTINLD
       .::::::::.::: ::.::::. :::: ::.:.::::::.:.::::: ::::::::.. :
CCDS83 DKDQRSLDIDTAKSMLALLLGRTWPLFSVFYQYLEQSKYRVMNKDQWYNVLEFSRTVHAD
              160       170       180       190       200       210

         270       280       290  
pF1KSD LSNYDEDGAWPVLLDEFVEWYKDKQMS
       :::::::::::::::::::: : .: :
CCDS83 LSNYDEDGAWPVLLDEFVEWQKVRQTS
              220       230       

>>CCDS32013.1 DCUN1D2 gene_id:55208|Hs108|chr13           (259 aa)
 initn: 454 init1: 436 opt: 488  Z-score: 587.6  bits: 116.5 E(32554): 2.1e-26
Smith-Waterman score: 488; 34.8% identity (71.5% similar) in 207 aa overlap (83-287:42-248)

             60        70        80        90       100       110  
pF1KSD SSDCFNKVMPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYE
                                     ::.... :: . .. ..: ..:.  . . .
CCDS32 VRQFMACTQAGERTAIYCLTQNEWRLDEATDSFFQNPDSLHRESMRNAVDKKKLERLYGR
              20        30        40        50        60        70 

              120       130       140       150       160       170
pF1KSD YAGTDDV--VGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQC
       :   .:   .: .:...::.:....: .. .::.:::. : ..  :. .:.: ::: : :
CCDS32 YKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSRKEFLDGMTELGC
              80        90       100       110       120       130 

              180       190       200       210       220       230
pF1KSD DTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWP
       :. :::.  :  :.. :.:...:: .:...: ::..  :..::.. :  .  :.:.  . 
CCDS32 DSMEKLKALLPRLEQELKDTAKFKDFYQFTFTFAKNPGQKGLDLEMAVAYWKLVLSGRFK
             140       150       160       170       180       190 

              240       250       260       270       280       290
pF1KSD LFPVFHQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQ
       .. ... :: . . . : .: :  .:.:.  :  :.:::::.::::::.:.:::. .   
CCDS32 FLDLWNTFLMEHHKRSIPRDTWNLLLDFGNMIADDMSNYDEEGAWPVLIDDFVEYARPVV
             200       210       220       230       240       250 

               
pF1KSD MS      
               
CCDS32 TGGKRSLF
               

>>CCDS77862.1 DCUN1D1 gene_id:54165|Hs108|chr3            (244 aa)
 initn: 462 init1: 435 opt: 466  Z-score: 561.8  bits: 111.6 E(32554): 5.7e-25
Smith-Waterman score: 466; 35.4% identity (71.4% similar) in 189 aa overlap (104-289:47-235)

            80        90       100       110          120       130
pF1KSD DLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYE-YAGTDDV--VGPEGMEKFCE
                                     .. :: .:. :   .:   .: .:...::.
CCDS77 QNDWKLDVATDNFFQNPELYIRESVKGSLDRKKLEQLYNRYKDPQDENKIGIDGIQQFCD
         20        30        40        50        60        70      

              140       150       160       170       180       190
pF1KSD DIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDS
       :....: .. .:..:::. : ..  :. ::.. ::: : ::. :::.  .  ... :.. 
CCDS77 DLALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTELGCDSIEKLKAQIPKMEQELKEP
         80        90       100       110       120       130      

              200       210       220       230       240       250
pF1KSD TNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLEQSKYKVINKD
         :: .:...:.::..  :..::.. :  . .:.:.  . .. ....:: . . . : ::
CCDS77 GRFKDFYQFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFKFLDLWNKFLLEHHKRSIPKD
        140       150       160       170       180       190      

              260       270       280       290        
pF1KSD QWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS      
        :  .:.::  :  :.:::::.::::::.:.:::. . .         
CCDS77 TWNLLLDFSTMIADDMSNYDEEGAWPVLIDDFVEFARPQIAGTKSTTV
        200       210       220       230       240    

>>CCDS3240.1 DCUN1D1 gene_id:54165|Hs108|chr3             (259 aa)
 initn: 462 init1: 435 opt: 466  Z-score: 561.4  bits: 111.7 E(32554): 6e-25
Smith-Waterman score: 466; 35.4% identity (71.4% similar) in 189 aa overlap (104-289:62-250)

            80        90       100       110          120       130
pF1KSD DLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYE-YAGTDDV--VGPEGMEKFCE
                                     .. :: .:. :   .:   .: .:...::.
CCDS32 QNDWKLDVATDNFFQNPELYIRESVKGSLDRKKLEQLYNRYKDPQDENKIGIDGIQQFCD
              40        50        60        70        80        90 

              140       150       160       170       180       190
pF1KSD DIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDS
       :....: .. .:..:::. : ..  :. ::.. ::: : ::. :::.  .  ... :.. 
CCDS32 DLALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTELGCDSIEKLKAQIPKMEQELKEP
             100       110       120       130       140       150 

              200       210       220       230       240       250
pF1KSD TNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLEQSKYKVINKD
         :: .:...:.::..  :..::.. :  . .:.:.  . .. ....:: . . . : ::
CCDS32 GRFKDFYQFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFKFLDLWNKFLLEHHKRSIPKD
             160       170       180       190       200       210 

              260       270       280       290        
pF1KSD QWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS      
        :  .:.::  :  :.:::::.::::::.:.:::. . .         
CCDS32 TWNLLLDFSTMIADDMSNYDEEGAWPVLIDDFVEFARPQIAGTKSTTV
             220       230       240       250         

>>CCDS10592.1 DCUN1D3 gene_id:123879|Hs108|chr16          (304 aa)
 initn: 332 init1: 200 opt: 396  Z-score: 476.9  bits: 96.3 E(32554): 3.1e-20
Smith-Waterman score: 396; 35.3% identity (63.2% similar) in 204 aa overlap (95-290:80-281)

           70        80        90       100       110        120   
pF1KSD KKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGT-DDVVGPE
                                     :.. :  : .:  : : .:    .:..  :
CCDS10 DILVNGTKKAEAATEACQLPTSSGDAGRESKSNAEESSLQRLEELFRRYKDEREDAILEE
      50        60        70        80        90       100         

           130       140       150       160       170       180   
pF1KSD GMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYL
       :::.::.:. :.: .  .:.::::..: .:  :: .:.. :  ... :. . .   .  :
CCDS10 GMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSL
     110       120       130       140       150       160         

           190       200         210       220       230       240 
pF1KSD RSFLNDSTNFKLIYRYAFDFA--REKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE-
        .  ..  .:: .::..:.:.   :. ::::  . :  .  :.. .  :  ::. :.:. 
CCDS10 LTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNP--PVLDQWLNF
     170       180       190       200       210         220       

                  250       260       270       280       290      
pF1KSD ----QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS    
            :  : :..: :   :.:...:. :::::.:: ::: :.: ::::  ...      
CCDS10 LTENPSGIKGISRDTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERRKREGEG
       230       240       250       260       270       280       

CCDS10 RGALSSGPEGLCPEEQT
       290       300    




292 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:03:44 2016 done: Thu Nov  3 01:03:44 2016
 Total Scan time:  2.430 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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