Result of FASTA (omim) for pF1KSDA0245
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0245, 515 aa
  1>>>pF1KSDA0245 515 - 515 aa - 515 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6422+/-0.000402; mu= 22.1718+/- 0.025
 mean_var=64.6838+/-13.101, 0's: 0 Z-trim(110.7): 62  B-trim: 1107 in 1/53
 Lambda= 0.159469
 statistics sampled from 18993 (19059) to 18993 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.582), E-opt: 0.2 (0.223), width:  16
 Scan time:  7.840

The best scores are:                                      opt bits E(85289)
XP_011521736 (OMIM: 605641) PREDICTED: Y+L amino a ( 515) 3394 790.1       0
XP_011521735 (OMIM: 605641) PREDICTED: Y+L amino a ( 515) 3394 790.1       0
NP_001070253 (OMIM: 605641) Y+L amino acid transpo ( 515) 3394 790.1       0
NP_003974 (OMIM: 605641) Y+L amino acid transporte ( 515) 3394 790.1       0
XP_011521740 (OMIM: 605641) PREDICTED: Y+L amino a ( 515) 3394 790.1       0
XP_006720365 (OMIM: 222700,603593) PREDICTED: Y+L  ( 511) 2522 589.5  8e-168
NP_001119577 (OMIM: 222700,603593) Y+L amino acid  ( 511) 2522 589.5  8e-168
XP_011535600 (OMIM: 222700,603593) PREDICTED: Y+L  ( 511) 2522 589.5  8e-168
NP_001119578 (OMIM: 222700,603593) Y+L amino acid  ( 511) 2522 589.5  8e-168
XP_011535601 (OMIM: 222700,603593) PREDICTED: Y+L  ( 511) 2522 589.5  8e-168
XP_016879340 (OMIM: 605641) PREDICTED: Y+L amino a ( 382) 2245 525.6 9.9e-149
XP_011521741 (OMIM: 605641) PREDICTED: Y+L amino a ( 307) 2036 477.5 2.5e-134
NP_036376 (OMIM: 604235) large neutral amino acids ( 535) 1665 392.3 1.9e-108
NP_003477 (OMIM: 600182) large neutral amino acids ( 507) 1621 382.2  2e-105
XP_016879224 (OMIM: 600182) PREDICTED: large neutr ( 509) 1621 382.2  2e-105
NP_062823 (OMIM: 607959) asc-type amino acid trans ( 523) 1544 364.5 4.4e-100
NP_055146 (OMIM: 607933) cystine/glutamate transpo ( 501) 1509 356.4 1.1e-97
XP_011530104 (OMIM: 607933) PREDICTED: cystine/glu ( 506) 1494 353.0 1.3e-96
NP_001119807 (OMIM: 220100,604144) B(0,+)-type ami ( 487) 1365 323.3   1e-87
NP_001229965 (OMIM: 220100,604144) B(0,+)-type ami ( 487) 1365 323.3   1e-87
XP_011524704 (OMIM: 220100,604144) PREDICTED: B(0, ( 487) 1365 323.3   1e-87
NP_055085 (OMIM: 220100,604144) B(0,+)-type amino  ( 487) 1365 323.3   1e-87
XP_006723347 (OMIM: 607959) PREDICTED: asc-type am ( 444) 1102 262.7 1.6e-69
XP_016881719 (OMIM: 220100,604144) PREDICTED: B(0, ( 399) 1092 260.4 7.3e-69
NP_001253965 (OMIM: 604235) large neutral amino ac ( 430) 1086 259.0   2e-68
XP_016879226 (OMIM: 600182) PREDICTED: large neutr ( 332) 1061 253.2 8.9e-67
XP_006721349 (OMIM: 600182) PREDICTED: large neutr ( 352) 1061 253.2 9.3e-67
XP_011525421 (OMIM: 607959) PREDICTED: asc-type am ( 660)  968 232.0 4.1e-60
NP_877392 (OMIM: 604235) large neutral amino acids ( 332)  952 228.1 3.2e-59
XP_016879225 (OMIM: 600182) PREDICTED: large neutr ( 467)  940 225.5 2.8e-58
NP_001253966 (OMIM: 604235) large neutral amino ac ( 311)  809 195.2 2.4e-49
XP_006723055 (OMIM: 220100,604144) PREDICTED: B(0, ( 260)  654 159.4 1.1e-38
XP_011525422 (OMIM: 607959) PREDICTED: asc-type am ( 633)  451 113.1 2.5e-24
NP_004164 (OMIM: 603752) cationic amino acid trans ( 635)  193 53.7 1.9e-06
XP_005266564 (OMIM: 104615) PREDICTED: high affini ( 629)  192 53.5 2.2e-06
NP_003036 (OMIM: 104615) high affinity cationic am ( 629)  192 53.5 2.2e-06
XP_016876205 (OMIM: 104615) PREDICTED: high affini ( 629)  192 53.5 2.2e-06
XP_016876203 (OMIM: 104615) PREDICTED: high affini ( 643)  192 53.5 2.2e-06
XP_016876202 (OMIM: 104615) PREDICTED: high affini ( 643)  192 53.5 2.2e-06
XP_016876204 (OMIM: 104615) PREDICTED: high affini ( 643)  192 53.5 2.2e-06
XP_016869236 (OMIM: 601872) PREDICTED: cationic am ( 657)  184 51.7 8.1e-06
NP_001008539 (OMIM: 601872) cationic amino acid tr ( 658)  184 51.7 8.1e-06
XP_005273667 (OMIM: 601872) PREDICTED: cationic am ( 658)  184 51.7 8.1e-06
XP_005273668 (OMIM: 601872) PREDICTED: cationic am ( 658)  184 51.7 8.1e-06
XP_005273669 (OMIM: 601872) PREDICTED: cationic am ( 658)  184 51.7 8.1e-06
XP_016869235 (OMIM: 601872) PREDICTED: cationic am ( 658)  184 51.7 8.1e-06
NP_003037 (OMIM: 601872) cationic amino acid trans ( 697)  184 51.7 8.4e-06
NP_001158243 (OMIM: 601872) cationic amino acid tr ( 698)  184 51.7 8.5e-06
NP_066000 (OMIM: 615720,615725) probable cationic  ( 771)  177 50.1 2.8e-05
NP_001041629 (OMIM: 300443) cationic amino acid tr ( 619)  174 49.3 3.8e-05


>>XP_011521736 (OMIM: 605641) PREDICTED: Y+L amino acid   (515 aa)
 initn: 3394 init1: 3394 opt: 3394  Z-score: 4218.1  bits: 790.1 E(85289):    0
Smith-Waterman score: 3394; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)

               10        20        30        40        50        60
pF1KSD MEAREPGRPTPTYHLVPNTSQSQVEEDVSSPPQRSSETMQLKKEISLLNGVSLVVGNMIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEAREPGRPTPTYHLVPNTSQSQVEEDVSSPPQRSSETMQLKKEISLLNGVSLVVGNMIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYILEAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYILEAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICLLTFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICLLTFV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNLSLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNLSLAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNISDVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNISDVLS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLLSMIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLLSMIH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD IERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEPKRPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEPKRPR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD PLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRRPLFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRRPLFI
              430       440       450       460       470       480

              490       500       510     
pF1KSD RNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD
       :::::::::::::::::::::::::::::::::::
XP_011 RNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD
              490       500       510     

>>XP_011521735 (OMIM: 605641) PREDICTED: Y+L amino acid   (515 aa)
 initn: 3394 init1: 3394 opt: 3394  Z-score: 4218.1  bits: 790.1 E(85289):    0
Smith-Waterman score: 3394; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)

               10        20        30        40        50        60
pF1KSD MEAREPGRPTPTYHLVPNTSQSQVEEDVSSPPQRSSETMQLKKEISLLNGVSLVVGNMIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEAREPGRPTPTYHLVPNTSQSQVEEDVSSPPQRSSETMQLKKEISLLNGVSLVVGNMIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYILEAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYILEAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICLLTFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICLLTFV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNLSLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNLSLAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNISDVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNISDVLS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLLSMIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLLSMIH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD IERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEPKRPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEPKRPR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD PLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRRPLFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRRPLFI
              430       440       450       460       470       480

              490       500       510     
pF1KSD RNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD
       :::::::::::::::::::::::::::::::::::
XP_011 RNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD
              490       500       510     

>>NP_001070253 (OMIM: 605641) Y+L amino acid transporter  (515 aa)
 initn: 3394 init1: 3394 opt: 3394  Z-score: 4218.1  bits: 790.1 E(85289):    0
Smith-Waterman score: 3394; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)

               10        20        30        40        50        60
pF1KSD MEAREPGRPTPTYHLVPNTSQSQVEEDVSSPPQRSSETMQLKKEISLLNGVSLVVGNMIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAREPGRPTPTYHLVPNTSQSQVEEDVSSPPQRSSETMQLKKEISLLNGVSLVVGNMIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYILEAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYILEAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICLLTFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICLLTFV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNLSLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNLSLAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNISDVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNISDVLS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLLSMIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLLSMIH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD IERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEPKRPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEPKRPR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD PLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRRPLFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRRPLFI
              430       440       450       460       470       480

              490       500       510     
pF1KSD RNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD
       :::::::::::::::::::::::::::::::::::
NP_001 RNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD
              490       500       510     

>>NP_003974 (OMIM: 605641) Y+L amino acid transporter 2   (515 aa)
 initn: 3394 init1: 3394 opt: 3394  Z-score: 4218.1  bits: 790.1 E(85289):    0
Smith-Waterman score: 3394; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)

               10        20        30        40        50        60
pF1KSD MEAREPGRPTPTYHLVPNTSQSQVEEDVSSPPQRSSETMQLKKEISLLNGVSLVVGNMIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MEAREPGRPTPTYHLVPNTSQSQVEEDVSSPPQRSSETMQLKKEISLLNGVSLVVGNMIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYILEAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYILEAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICLLTFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICLLTFV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNLSLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNLSLAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNISDVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNISDVLS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLLSMIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLLSMIH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD IERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEPKRPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEPKRPR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD PLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRRPLFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRRPLFI
              430       440       450       460       470       480

              490       500       510     
pF1KSD RNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD
       :::::::::::::::::::::::::::::::::::
NP_003 RNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD
              490       500       510     

>>XP_011521740 (OMIM: 605641) PREDICTED: Y+L amino acid   (515 aa)
 initn: 3394 init1: 3394 opt: 3394  Z-score: 4218.1  bits: 790.1 E(85289):    0
Smith-Waterman score: 3394; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)

               10        20        30        40        50        60
pF1KSD MEAREPGRPTPTYHLVPNTSQSQVEEDVSSPPQRSSETMQLKKEISLLNGVSLVVGNMIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEAREPGRPTPTYHLVPNTSQSQVEEDVSSPPQRSSETMQLKKEISLLNGVSLVVGNMIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYILEAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYILEAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICLLTFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICLLTFV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNLSLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNLSLAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNISDVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNISDVLS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLLSMIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLLSMIH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD IERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEPKRPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEPKRPR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD PLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRRPLFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRRPLFI
              430       440       450       460       470       480

              490       500       510     
pF1KSD RNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD
       :::::::::::::::::::::::::::::::::::
XP_011 RNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD
              490       500       510     

>>XP_006720365 (OMIM: 222700,603593) PREDICTED: Y+L amin  (511 aa)
 initn: 2530 init1: 2503 opt: 2522  Z-score: 3133.9  bits: 589.5 E(85289): 8e-168
Smith-Waterman score: 2522; 73.6% identity (89.2% similar) in 500 aa overlap (20-515:11-507)

               10        20            30        40        50      
pF1KSD MEAREPGRPTPTYHLVPNTSQSQVEE----DVSSPPQRSSETMQLKKEISLLNGVSLVVG
                          :: .::     : .::   . : ..::::::::::: :.::
XP_006          MVDSTEYEVASQPEVETSPLGDGASP---GPEQVKLKKEISLLNGVCLIVG
                        10        20           30        40        

         60        70        80        90       100       110      
pF1KSD NMIGSGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYIL
       :::::::::::::::...::.:.::..::.:::::: :::::::::::: ::::::::::
XP_006 NMIGSGIFVSPKGVLIYSASFGLSLVIWAVGGLFSVFGALCYAELGTTIKKSGASYAYIL
       50        60        70        80        90       100        

        120       130       140       150       160       170      
pF1KSD EAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICL
       ::::::.::::::.:::..:::.:::::::::::..:: ::::  :: : ::::::::::
XP_006 EAFGGFLAFIRLWTSLLIIEPTSQAIIAITFANYMVQPLFPSCFAPYAASRLLAAACICL
      110       120       130       140       150       160        

        180       190       200       210       220       230      
pF1KSD LTFVNCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNL
       :::.::::::::: ::: ::::::.::::.:: :.:.: :: : ::...:::::. .:..
XP_006 LTFINCAYVKWGTLVQDIFTYAKVLALIAVIVAGIVRLGQGASTHFENSFEGSSFAVGDI
      170       180       190       200       210       220        

        240       250       260       270       280       290      
pF1KSD SLALYSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNIS
       .:::::::::::::::::.::::::::::::::.:::::::::.:::::::::::::.. 
XP_006 ALALYSALFSYSGWDTLNYVTEEIKNPERNLPLSIGISMPIVTIIYILTNVAYYTVLDMR
      230       240       250       260       270       280        

        300       310       320       330       340       350      
pF1KSD DVLSSDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLL
       :.:.::::::::::: ::.:.: ::..::::::::::::: :.::::::::::::::: .
XP_006 DILASDAVAVTFADQIFGIFNWIIPLSVALSCFGGLNASIVAASRLFFVGSREGHLPDAI
      290       300       310       320       330       340        

        360       370       380       390       400       410      
pF1KSD SMIHIERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEP
        :::.:::::.:.::::  :::::: :::.::::::.:::::::::::.:::::::::::
XP_006 CMIHVERFTPVPSLLFNGIMALIYLCVEDIFQLINYYSFSYWFFVGLSIVGQLYLRWKEP
      350       360       370       380       390       400        

        420       430       440       450       460       470      
pF1KSD KRPRPLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRR
        ::::::::::::::::.:..::: :::..:::::::::.:::::.::::. . .:: .:
XP_006 DRPRPLKLSVFFPIVFCLCTIFLVAVPLYSDTINSLIGIAIALSGLPFYFLIIRVPEHKR
      410       420       430       440       450       460        

        480       490       500       510         
pF1KSD PLFIRNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD    
       ::..: .... ::  : ::. : .:.:. .  .  .. :    
XP_006 PLYLRRIVGSATRYLQVLCMSVAAEMDLEDGGEMPKQRDPKSN
      470       480       490       500       510 

>>NP_001119577 (OMIM: 222700,603593) Y+L amino acid tran  (511 aa)
 initn: 2530 init1: 2503 opt: 2522  Z-score: 3133.9  bits: 589.5 E(85289): 8e-168
Smith-Waterman score: 2522; 73.6% identity (89.2% similar) in 500 aa overlap (20-515:11-507)

               10        20            30        40        50      
pF1KSD MEAREPGRPTPTYHLVPNTSQSQVEE----DVSSPPQRSSETMQLKKEISLLNGVSLVVG
                          :: .::     : .::   . : ..::::::::::: :.::
NP_001          MVDSTEYEVASQPEVETSPLGDGASP---GPEQVKLKKEISLLNGVCLIVG
                        10        20           30        40        

         60        70        80        90       100       110      
pF1KSD NMIGSGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYIL
       :::::::::::::::...::.:.::..::.:::::: :::::::::::: ::::::::::
NP_001 NMIGSGIFVSPKGVLIYSASFGLSLVIWAVGGLFSVFGALCYAELGTTIKKSGASYAYIL
       50        60        70        80        90       100        

        120       130       140       150       160       170      
pF1KSD EAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICL
       ::::::.::::::.:::..:::.:::::::::::..:: ::::  :: : ::::::::::
NP_001 EAFGGFLAFIRLWTSLLIIEPTSQAIIAITFANYMVQPLFPSCFAPYAASRLLAAACICL
      110       120       130       140       150       160        

        180       190       200       210       220       230      
pF1KSD LTFVNCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNL
       :::.::::::::: ::: ::::::.::::.:: :.:.: :: : ::...:::::. .:..
NP_001 LTFINCAYVKWGTLVQDIFTYAKVLALIAVIVAGIVRLGQGASTHFENSFEGSSFAVGDI
      170       180       190       200       210       220        

        240       250       260       270       280       290      
pF1KSD SLALYSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNIS
       .:::::::::::::::::.::::::::::::::.:::::::::.:::::::::::::.. 
NP_001 ALALYSALFSYSGWDTLNYVTEEIKNPERNLPLSIGISMPIVTIIYILTNVAYYTVLDMR
      230       240       250       260       270       280        

        300       310       320       330       340       350      
pF1KSD DVLSSDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLL
       :.:.::::::::::: ::.:.: ::..::::::::::::: :.::::::::::::::: .
NP_001 DILASDAVAVTFADQIFGIFNWIIPLSVALSCFGGLNASIVAASRLFFVGSREGHLPDAI
      290       300       310       320       330       340        

        360       370       380       390       400       410      
pF1KSD SMIHIERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEP
        :::.:::::.:.::::  :::::: :::.::::::.:::::::::::.:::::::::::
NP_001 CMIHVERFTPVPSLLFNGIMALIYLCVEDIFQLINYYSFSYWFFVGLSIVGQLYLRWKEP
      350       360       370       380       390       400        

        420       430       440       450       460       470      
pF1KSD KRPRPLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRR
        ::::::::::::::::.:..::: :::..:::::::::.:::::.::::. . .:: .:
NP_001 DRPRPLKLSVFFPIVFCLCTIFLVAVPLYSDTINSLIGIAIALSGLPFYFLIIRVPEHKR
      410       420       430       440       450       460        

        480       490       500       510         
pF1KSD PLFIRNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD    
       ::..: .... ::  : ::. : .:.:. .  .  .. :    
NP_001 PLYLRRIVGSATRYLQVLCMSVAAEMDLEDGGEMPKQRDPKSN
      470       480       490       500       510 

>>XP_011535600 (OMIM: 222700,603593) PREDICTED: Y+L amin  (511 aa)
 initn: 2530 init1: 2503 opt: 2522  Z-score: 3133.9  bits: 589.5 E(85289): 8e-168
Smith-Waterman score: 2522; 73.6% identity (89.2% similar) in 500 aa overlap (20-515:11-507)

               10        20            30        40        50      
pF1KSD MEAREPGRPTPTYHLVPNTSQSQVEE----DVSSPPQRSSETMQLKKEISLLNGVSLVVG
                          :: .::     : .::   . : ..::::::::::: :.::
XP_011          MVDSTEYEVASQPEVETSPLGDGASP---GPEQVKLKKEISLLNGVCLIVG
                        10        20           30        40        

         60        70        80        90       100       110      
pF1KSD NMIGSGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYIL
       :::::::::::::::...::.:.::..::.:::::: :::::::::::: ::::::::::
XP_011 NMIGSGIFVSPKGVLIYSASFGLSLVIWAVGGLFSVFGALCYAELGTTIKKSGASYAYIL
       50        60        70        80        90       100        

        120       130       140       150       160       170      
pF1KSD EAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICL
       ::::::.::::::.:::..:::.:::::::::::..:: ::::  :: : ::::::::::
XP_011 EAFGGFLAFIRLWTSLLIIEPTSQAIIAITFANYMVQPLFPSCFAPYAASRLLAAACICL
      110       120       130       140       150       160        

        180       190       200       210       220       230      
pF1KSD LTFVNCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNL
       :::.::::::::: ::: ::::::.::::.:: :.:.: :: : ::...:::::. .:..
XP_011 LTFINCAYVKWGTLVQDIFTYAKVLALIAVIVAGIVRLGQGASTHFENSFEGSSFAVGDI
      170       180       190       200       210       220        

        240       250       260       270       280       290      
pF1KSD SLALYSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNIS
       .:::::::::::::::::.::::::::::::::.:::::::::.:::::::::::::.. 
XP_011 ALALYSALFSYSGWDTLNYVTEEIKNPERNLPLSIGISMPIVTIIYILTNVAYYTVLDMR
      230       240       250       260       270       280        

        300       310       320       330       340       350      
pF1KSD DVLSSDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLL
       :.:.::::::::::: ::.:.: ::..::::::::::::: :.::::::::::::::: .
XP_011 DILASDAVAVTFADQIFGIFNWIIPLSVALSCFGGLNASIVAASRLFFVGSREGHLPDAI
      290       300       310       320       330       340        

        360       370       380       390       400       410      
pF1KSD SMIHIERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEP
        :::.:::::.:.::::  :::::: :::.::::::.:::::::::::.:::::::::::
XP_011 CMIHVERFTPVPSLLFNGIMALIYLCVEDIFQLINYYSFSYWFFVGLSIVGQLYLRWKEP
      350       360       370       380       390       400        

        420       430       440       450       460       470      
pF1KSD KRPRPLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRR
        ::::::::::::::::.:..::: :::..:::::::::.:::::.::::. . .:: .:
XP_011 DRPRPLKLSVFFPIVFCLCTIFLVAVPLYSDTINSLIGIAIALSGLPFYFLIIRVPEHKR
      410       420       430       440       450       460        

        480       490       500       510         
pF1KSD PLFIRNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD    
       ::..: .... ::  : ::. : .:.:. .  .  .. :    
XP_011 PLYLRRIVGSATRYLQVLCMSVAAEMDLEDGGEMPKQRDPKSN
      470       480       490       500       510 

>>NP_001119578 (OMIM: 222700,603593) Y+L amino acid tran  (511 aa)
 initn: 2530 init1: 2503 opt: 2522  Z-score: 3133.9  bits: 589.5 E(85289): 8e-168
Smith-Waterman score: 2522; 73.6% identity (89.2% similar) in 500 aa overlap (20-515:11-507)

               10        20            30        40        50      
pF1KSD MEAREPGRPTPTYHLVPNTSQSQVEE----DVSSPPQRSSETMQLKKEISLLNGVSLVVG
                          :: .::     : .::   . : ..::::::::::: :.::
NP_001          MVDSTEYEVASQPEVETSPLGDGASP---GPEQVKLKKEISLLNGVCLIVG
                        10        20           30        40        

         60        70        80        90       100       110      
pF1KSD NMIGSGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYIL
       :::::::::::::::...::.:.::..::.:::::: :::::::::::: ::::::::::
NP_001 NMIGSGIFVSPKGVLIYSASFGLSLVIWAVGGLFSVFGALCYAELGTTIKKSGASYAYIL
       50        60        70        80        90       100        

        120       130       140       150       160       170      
pF1KSD EAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICL
       ::::::.::::::.:::..:::.:::::::::::..:: ::::  :: : ::::::::::
NP_001 EAFGGFLAFIRLWTSLLIIEPTSQAIIAITFANYMVQPLFPSCFAPYAASRLLAAACICL
      110       120       130       140       150       160        

        180       190       200       210       220       230      
pF1KSD LTFVNCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNL
       :::.::::::::: ::: ::::::.::::.:: :.:.: :: : ::...:::::. .:..
NP_001 LTFINCAYVKWGTLVQDIFTYAKVLALIAVIVAGIVRLGQGASTHFENSFEGSSFAVGDI
      170       180       190       200       210       220        

        240       250       260       270       280       290      
pF1KSD SLALYSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNIS
       .:::::::::::::::::.::::::::::::::.:::::::::.:::::::::::::.. 
NP_001 ALALYSALFSYSGWDTLNYVTEEIKNPERNLPLSIGISMPIVTIIYILTNVAYYTVLDMR
      230       240       250       260       270       280        

        300       310       320       330       340       350      
pF1KSD DVLSSDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLL
       :.:.::::::::::: ::.:.: ::..::::::::::::: :.::::::::::::::: .
NP_001 DILASDAVAVTFADQIFGIFNWIIPLSVALSCFGGLNASIVAASRLFFVGSREGHLPDAI
      290       300       310       320       330       340        

        360       370       380       390       400       410      
pF1KSD SMIHIERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEP
        :::.:::::.:.::::  :::::: :::.::::::.:::::::::::.:::::::::::
NP_001 CMIHVERFTPVPSLLFNGIMALIYLCVEDIFQLINYYSFSYWFFVGLSIVGQLYLRWKEP
      350       360       370       380       390       400        

        420       430       440       450       460       470      
pF1KSD KRPRPLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRR
        ::::::::::::::::.:..::: :::..:::::::::.:::::.::::. . .:: .:
NP_001 DRPRPLKLSVFFPIVFCLCTIFLVAVPLYSDTINSLIGIAIALSGLPFYFLIIRVPEHKR
      410       420       430       440       450       460        

        480       490       500       510         
pF1KSD PLFIRNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD    
       ::..: .... ::  : ::. : .:.:. .  .  .. :    
NP_001 PLYLRRIVGSATRYLQVLCMSVAAEMDLEDGGEMPKQRDPKSN
      470       480       490       500       510 

>>XP_011535601 (OMIM: 222700,603593) PREDICTED: Y+L amin  (511 aa)
 initn: 2530 init1: 2503 opt: 2522  Z-score: 3133.9  bits: 589.5 E(85289): 8e-168
Smith-Waterman score: 2522; 73.6% identity (89.2% similar) in 500 aa overlap (20-515:11-507)

               10        20            30        40        50      
pF1KSD MEAREPGRPTPTYHLVPNTSQSQVEE----DVSSPPQRSSETMQLKKEISLLNGVSLVVG
                          :: .::     : .::   . : ..::::::::::: :.::
XP_011          MVDSTEYEVASQPEVETSPLGDGASP---GPEQVKLKKEISLLNGVCLIVG
                        10        20           30        40        

         60        70        80        90       100       110      
pF1KSD NMIGSGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYIL
       :::::::::::::::...::.:.::..::.:::::: :::::::::::: ::::::::::
XP_011 NMIGSGIFVSPKGVLIYSASFGLSLVIWAVGGLFSVFGALCYAELGTTIKKSGASYAYIL
       50        60        70        80        90       100        

        120       130       140       150       160       170      
pF1KSD EAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACICL
       ::::::.::::::.:::..:::.:::::::::::..:: ::::  :: : ::::::::::
XP_011 EAFGGFLAFIRLWTSLLIIEPTSQAIIAITFANYMVQPLFPSCFAPYAASRLLAAACICL
      110       120       130       140       150       160        

        180       190       200       210       220       230      
pF1KSD LTFVNCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEHFQDAFEGSSWDMGNL
       :::.::::::::: ::: ::::::.::::.:: :.:.: :: : ::...:::::. .:..
XP_011 LTFINCAYVKWGTLVQDIFTYAKVLALIAVIVAGIVRLGQGASTHFENSFEGSSFAVGDI
      170       180       190       200       210       220        

        240       250       260       270       280       290      
pF1KSD SLALYSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNIS
       .:::::::::::::::::.::::::::::::::.:::::::::.:::::::::::::.. 
XP_011 ALALYSALFSYSGWDTLNYVTEEIKNPERNLPLSIGISMPIVTIIYILTNVAYYTVLDMR
      230       240       250       260       270       280        

        300       310       320       330       340       350      
pF1KSD DVLSSDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLL
       :.:.::::::::::: ::.:.: ::..::::::::::::: :.::::::::::::::: .
XP_011 DILASDAVAVTFADQIFGIFNWIIPLSVALSCFGGLNASIVAASRLFFVGSREGHLPDAI
      290       300       310       320       330       340        

        360       370       380       390       400       410      
pF1KSD SMIHIERFTPIPALLFNCTMALIYLIVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEP
        :::.:::::.:.::::  :::::: :::.::::::.:::::::::::.:::::::::::
XP_011 CMIHVERFTPVPSLLFNGIMALIYLCVEDIFQLINYYSFSYWFFVGLSIVGQLYLRWKEP
      350       360       370       380       390       400        

        420       430       440       450       460       470      
pF1KSD KRPRPLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRR
        ::::::::::::::::.:..::: :::..:::::::::.:::::.::::. . .:: .:
XP_011 DRPRPLKLSVFFPIVFCLCTIFLVAVPLYSDTINSLIGIAIALSGLPFYFLIIRVPEHKR
      410       420       430       440       450       460        

        480       490       500       510         
pF1KSD PLFIRNVLAAITRGTQQLCFCVLTELDVAEEKKDERKTD    
       ::..: .... ::  : ::. : .:.:. .  .  .. :    
XP_011 PLYLRRIVGSATRYLQVLCMSVAAEMDLEDGGEMPKQRDPKSN
      470       480       490       500       510 




515 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:53:28 2016 done: Thu Nov  3 00:53:29 2016
 Total Scan time:  7.840 Total Display time:  0.130

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com