Result of FASTA (ccds) for pF1KSDA0235
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0235, 1064 aa
  1>>>pF1KSDA0235 1064 - 1064 aa - 1064 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7401+/-0.00114; mu= -2.6413+/- 0.068
 mean_var=277.3389+/-57.395, 0's: 0 Z-trim(111.7): 51  B-trim: 707 in 1/51
 Lambda= 0.077014
 statistics sampled from 12554 (12587) to 12554 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.387), width:  16
 Scan time:  3.460

The best scores are:                                      opt bits E(32554)
CCDS1698.1 PUM2 gene_id:23369|Hs108|chr2           (1064) 7067 799.5       0
CCDS74487.1 PUM2 gene_id:23369|Hs108|chr2          (1008) 6664 754.7 2.3e-217
CCDS338.1 PUM1 gene_id:9698|Hs108|chr1             (1186) 5432 617.9 4.2e-176
CCDS44099.1 PUM1 gene_id:9698|Hs108|chr1           (1188) 5418 616.3 1.2e-175
CCDS74486.1 PUM2 gene_id:23369|Hs108|chr2          ( 929) 3772 433.4 1.1e-120


>>CCDS1698.1 PUM2 gene_id:23369|Hs108|chr2                (1064 aa)
 initn: 7067 init1: 7067 opt: 7067  Z-score: 4257.6  bits: 799.5 E(32554):    0
Smith-Waterman score: 7067; 100.0% identity (100.0% similar) in 1064 aa overlap (1-1064:1-1064)

               10        20        30        40        50        60
pF1KSD MNHDFQALALESRGMGELLPTKKFWEPDDSTKDGQKGIFLGDDEWRETAWGASHHSMSQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MNHDFQALALESRGMGELLPTKKFWEPDDSTKDGQKGIFLGDDEWRETAWGASHHSMSQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD IMVQRRSGQGFHGNSEVNAILSPRSESGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 IMVQRRSGQGFHGNSEVNAILSPRSESGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD AETDGPEKGDQKGKASPFEEDQNRDLKQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 AETDGPEKGDQKGKASPFEEDQNRDLKQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD ASPTEVVERLGPNTNPSEGLGPLPNPTANKPLVEEFSNPETQNLDAMEQVGLESLQFDYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 ASPTEVVERLGPNTNPSEGLGPLPNPTANKPLVEEFSNPETQNLDAMEQVGLESLQFDYP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GNQVPMDSSGATVGLFDYNSQQQLFQRTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 GNQVPMDSSGATVGLFDYNSQQQLFQRTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD GLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 GLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD QAAAAANNTASQQAASQAQPGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 QAAAAANNTASQQAASQAQPGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD FGQGLATGMPGYQVLAPTAYYDQTGALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 FGQGLATGMPGYQVLAPTAYYDQTGALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD AAAAGGTASSLTGSTNGLFRPIGTQPPQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 AAAAGGTASSLTGSTNGLFRPIGTQPPQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD HGPGQPGSTSLGFGSGNSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 HGPGQPGSTSLGFGSGNSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRSSS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD SLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 SLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD RYISAAPGAEAKYRSASSTSSLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 RYISAAPGAEAKYRSASSTSSLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD NLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 NLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVI
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD QKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 QKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD KCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 KCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQT
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD LPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 LPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVV
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD EKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 EKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH
              970       980       990      1000      1010      1020

             1030      1040      1050      1060    
pF1KSD KIRPHITTLRKYTYGKHILAKLEKYYLKNSPDLGPIGGPPNGML
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS16 KIRPHITTLRKYTYGKHILAKLEKYYLKNSPDLGPIGGPPNGML
             1030      1040      1050      1060    

>>CCDS74487.1 PUM2 gene_id:23369|Hs108|chr2               (1008 aa)
 initn: 6664 init1: 6664 opt: 6664  Z-score: 4016.0  bits: 754.7 E(32554): 2.3e-217
Smith-Waterman score: 6664; 100.0% identity (100.0% similar) in 1008 aa overlap (57-1064:1-1008)

         30        40        50        60        70        80      
pF1KSD PDDSTKDGQKGIFLGDDEWRETAWGASHHSMSQPIMVQRRSGQGFHGNSEVNAILSPRSE
                                     ::::::::::::::::::::::::::::::
CCDS74                               MSQPIMVQRRSGQGFHGNSEVNAILSPRSE
                                             10        20        30

         90       100       110       120       130       140      
pF1KSD SGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDL
               40        50        60        70        80        90

        150       160       170       180       190       200      
pF1KSD KQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNP
              100       110       120       130       140       150

        210       220       230       240       250       260      
pF1KSD TANKPLVEEFSNPETQNLDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TANKPLVEEFSNPETQNLDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQ
              160       170       180       190       200       210

        270       280       290       300       310       320      
pF1KSD RTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTA
              220       230       240       250       260       270

        330       340       350       360       370       380      
pF1KSD AGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQVL
              280       290       300       310       320       330

        390       400       410       420       430       440      
pF1KSD RAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQTGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQTGA
              340       350       360       370       380       390

        450       460       470       480       490       500      
pF1KSD LVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAAAAAGGTASSLTGSTNGLFRPIGTQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAAAAAGGTASSLTGSTNGLFRPIGTQP
              400       410       420       430       440       450

        510       520       530       540       550       560      
pF1KSD PQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLGAAIGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLGAAIGSA
              460       470       480       490       500       510

        570       580       590       600       610       620      
pF1KSD LSGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LSGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPL
              520       530       540       550       560       570

        630       640       650       660       670       680      
pF1KSD PSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSS
              580       590       600       610       620       630

        690       700       710       720       730       740      
pF1KSD SQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQ
              640       650       660       670       680       690

        750       760       770       780       790       800      
pF1KSD KLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPL
              700       710       720       730       740       750

        810       820       830       840       850       860      
pF1KSD ALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF
              760       770       780       790       800       810

        870       880       890       900       910       920      
pF1KSD IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH
              820       830       840       850       860       870

        930       940       950       960       970       980      
pF1KSD VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP
              880       890       900       910       920       930

        990      1000      1010      1020      1030      1040      
pF1KSD HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY
              940       950       960       970       980       990

       1050      1060    
pF1KSD LKNSPDLGPIGGPPNGML
       ::::::::::::::::::
CCDS74 LKNSPDLGPIGGPPNGML
             1000        

>>CCDS338.1 PUM1 gene_id:9698|Hs108|chr1                  (1186 aa)
 initn: 5044 init1: 3193 opt: 5432  Z-score: 3275.1  bits: 617.9 E(32554): 4.2e-176
Smith-Waterman score: 5432; 77.9% identity (91.2% similar) in 1074 aa overlap (1-1064:128-1186)

                                             10         20         
pF1KSD                               MNHDFQALALESRGMGE-LLPTKKFWEPDD
                                     .::::::::::.:.::: ::: ::::: :.
CCDS33 SGGGGYNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALALEGRAMGEQLLPGKKFWETDE
       100       110       120       130       140       150       

      30        40        50        60        70        80         
pF1KSD STKDGQKGIFLGDDEWRETAWGASHHSMSQPIMVQRRSGQGFHGNSEVNAILSPRSESGG
       :.::: ::::::: .::..:::.: ::.::::::::: ::.:: :::::..:::::::::
CCDS33 SSKDGPKGIFLGD-QWRDSAWGTSDHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSESGG
       160       170        180       190       200       210      

      90       100       110       120       130       140         
pF1KSD LGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDLKQG
       ::::::::::::::.   :: .:::.:: :::..:  .::..:.:.. :. :.  :::. 
CCDS33 LGVSMVEYVLSSSPG---DSCLRKGGFGPRDADSDENDKGEKKNKGT-FDGDKLGDLKEE
        220       230          240       250       260        270  

     150       160       170       180       190       200         
pF1KSD DDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNPTAN
        :  .: ::  . ::.::: :::.::::. : : .:: . :::: : ::::. : . .. 
CCDS33 GDVMDKTNGLPVQNGIDADVKDFSRTPGNCQNSANEV-DLLGPNQNGSEGLAQLTSTNGA
            280       290       300        310       320       330 

     210       220         230       240       250       260       
pF1KSD KPLVEEFSNPETQN--LDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQR
       :: ::.::: :.:.  :: ::.::.: ::::: :.:::.::..:::::::::::::::::
CCDS33 KP-VEDFSNMESQSVPLDPMEHVGMEPLQFDYSGTQVPVDSAAATVGLFDYNSQQQLFQR
              340       350       360       370       380       390

       270       280       290       300       310       320       
pF1KSD TNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAA
        :::.:::::::::::::::::.::::      :::::::::::::::::::::::::: 
CCDS33 PNALAVQQLTAAQQQQYALAAAHQPHI------GLAPAAFVPNPYIISAAPPGTDPYTA-
              400       410             420       430       440    

       330       340        350       360         370       380    
pF1KSD GLAAAATLAGPAVVPPQYYGV-PWGVYPANLFQQQAAAAA--NNTASQQAASQAQPGQQQ
       :::::::: :::::: ::::: :::::::.::::::::::  .:.:.::.. ::: ::::
CCDS33 GLAAAATL-GPAVVPHQYYGVTPWGVYPASLFQQQAAAAAAATNSANQQTTPQAQQGQQQ
           450        460       470       480       490       500  

          390       400       410       420       430       440    
pF1KSD VLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQT
       :::.::.::::::::.:::::.. :.::::.: .::::::::.::::: ::::.::::::
CCDS33 VLRGGASQRPLTPNQNQQGQQTDPLVAAAAVNSALAFGQGLAAGMPGYPVLAPAAYYDQT
            510       520       530       540       550       560  

          450       460       470          480       490       500 
pF1KSD GALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAA---AAAAAGGTASSLTGSTNGLFRP
       :::::. :::.::::::::.::.::.:::.:::::   :::.:.:.:..:.:.::: :::
CCDS33 GALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRP
            570       580       590       600       610       620  

             510        520       530       540       550       560
pF1KSD IGTQPPQQQ-QQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLG
       .::: :: : ::::..:: :.::::..::...::::::::.: .::..:::::::..:::
CCDS33 LGTQQPQPQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLG
            630       640       650       660       670       680  

              570       580       590       600       610       620
pF1KSD AAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPS
       :..::::.:::..:..: ..:..::.::. :::::::.::::.:::. :::.:.:::::.
CCDS33 ATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSSSLTPIGHSFYNGLSFSSSPG
            690       700       710       720       730       740  

              630       640       650       660       670       680
pF1KSD PIGMPLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTS
       :.::::::: :::: :::::::::::::::.:::::::::::::::::::::::::::.:
CCDS33 PVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSGRYISAAPGAEAKYRSASSAS
            750       760       770       780       790       800  

              690       700       710       720       730       740
pF1KSD SLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHG
       :::: :: ::  :::::. ::.::::::::::::::::.::::::.. :::.::::::::
CCDS33 SLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHG
            810       820       830       840       850       860  

              750       760       770       780       790       800
pF1KSD SRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIR
       ::::: :::::::::::.:::::::::::::.:::::::::::::::::.:::::: :::
CCDS33 SRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIR
            870       880       890       900       910       920  

              810       820       830       840       850       860
pF1KSD GHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQ
       :::: :::::::::::::::: : ::::.:::.:::::::::::::::::::::::::::
CCDS33 GHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQ
            930       940       950       960       970       980  

              870       880       890       900       910       920
pF1KSD PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYG
       ::::::::::::::::.::::::::::::::::::  .::::::::::::::::::::::
CCDS33 PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYG
            990      1000      1010      1020      1030      1040  

              930       940       950       960       970       980
pF1KSD NYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVC
       ::::::::::::::::::::.::::.::.::::::::::::::::::::.:::.::::::
CCDS33 NYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVC
           1050      1060      1070      1080      1090      1100  

              990      1000      1010      1020      1030      1040
pF1KSD CQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILA
        .::::::::::::::::::::::::::.:::.::::.::::::::.:::::::::::::
CCDS33 TMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILA
           1110      1120      1130      1140      1150      1160  

             1050      1060    
pF1KSD KLEKYYLKNSPDLGPIGGPPNGML
       ::::::.::. ::::: :::::..
CCDS33 KLEKYYMKNGVDLGPICGPPNGII
           1170      1180      

>>CCDS44099.1 PUM1 gene_id:9698|Hs108|chr1                (1188 aa)
 initn: 4069 init1: 1723 opt: 5418  Z-score: 3266.7  bits: 616.3 E(32554): 1.2e-175
Smith-Waterman score: 5418; 77.8% identity (91.0% similar) in 1076 aa overlap (1-1064:128-1188)

                                             10         20         
pF1KSD                               MNHDFQALALESRGMGE-LLPTKKFWEPDD
                                     .::::::::::.:.::: ::: ::::: :.
CCDS44 SGGGGYNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALALEGRAMGEQLLPGKKFWETDE
       100       110       120       130       140       150       

      30        40        50        60        70        80         
pF1KSD STKDGQKGIFLGDDEWRETAWGASHHSMSQPIMVQRRSGQGFHGNSEVNAILSPRSESGG
       :.::: ::::::: .::..:::.: ::.::::::::: ::.:: :::::..:::::::::
CCDS44 SSKDGPKGIFLGD-QWRDSAWGTSDHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSESGG
       160       170        180       190       200       210      

      90       100       110       120       130       140         
pF1KSD LGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDLKQG
       ::::::::::::::.   :: .:::.:: :::..:  .::..:.:.. :. :.  :::. 
CCDS44 LGVSMVEYVLSSSPG---DSCLRKGGFGPRDADSDENDKGEKKNKGT-FDGDKLGDLKEE
        220       230          240       250       260        270  

     150       160       170       180       190       200         
pF1KSD DDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNPTAN
        :  .: ::  . ::.::: :::.::::. : : .:: . :::: : ::::. : . .. 
CCDS44 GDVMDKTNGLPVQNGIDADVKDFSRTPGNCQNSANEV-DLLGPNQNGSEGLAQLTSTNGA
            280       290       300        310       320       330 

     210       220         230       240       250       260       
pF1KSD KPLVEEFSNPETQN--LDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQR
       :: ::.::: :.:.  :: ::.::.: ::::: :.:::.::..:::::::::::::::::
CCDS44 KP-VEDFSNMESQSVPLDPMEHVGMEPLQFDYSGTQVPVDSAAATVGLFDYNSQQQLFQR
              340       350       360       370       380       390

       270       280       290       300       310       320       
pF1KSD TNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAA
        :::.:::::::::::::::::.::::      :::::::::::::::::::::::::: 
CCDS44 PNALAVQQLTAAQQQQYALAAAHQPHI------GLAPAAFVPNPYIISAAPPGTDPYTA-
              400       410             420       430       440    

       330       340        350       360         370       380    
pF1KSD GLAAAATLAGPAVVPPQYYGV-PWGVYPANLFQQQAAAAA--NNTASQQAASQAQPGQQQ
       :::::::: :::::: ::::: :::::::.::::::::::  .:.:.::.. ::: ::::
CCDS44 GLAAAATL-GPAVVPHQYYGVTPWGVYPASLFQQQAAAAAAATNSANQQTTPQAQQGQQQ
           450        460       470       480       490       500  

          390       400       410       420       430       440    
pF1KSD VLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQT
       :::.::.::::::::.:::::.. :.::::.: .::::::::.::::: ::::.::::::
CCDS44 VLRGGASQRPLTPNQNQQGQQTDPLVAAAAVNSALAFGQGLAAGMPGYPVLAPAAYYDQT
            510       520       530       540       550       560  

          450       460       470          480       490       500 
pF1KSD GALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAA---AAAAAGGTASSLTGSTNGLFRP
       :::::. :::.::::::::.::.::.:::.:::::   :::.:.:.:..:.:.::: :::
CCDS44 GALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRP
            570       580       590       600       610       620  

             510        520       530       540       550       560
pF1KSD IGTQPPQQQ-QQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLG
       .::: :: : ::::..:: :.::::..::...::::::::.: .::..:::::::..:::
CCDS44 LGTQQPQPQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLG
            630       640       650       660       670       680  

              570       580       590       600       610       620
pF1KSD AAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPS
       :..::::.:::..:..: ..:..::.::. :::::::.::::.:::. :::.:.:::::.
CCDS44 ATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSSSLTPIGHSFYNGLSFSSSPG
            690       700       710       720       730       740  

              630       640       650       660       670       680
pF1KSD PIGMPLPSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTS
       :.::::::: :::: :::::::::::::::.:::::::::::::::::::::::::::.:
CCDS44 PVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSGRYISAAPGAEAKYRSASSAS
            750       760       770       780       790       800  

              690       700       710       720       730       740
pF1KSD SLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHG
       :::: :: ::  :::::. ::.::::::::::::::::.::::::.. :::.::::::::
CCDS44 SLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHG
            810       820       830       840       850       860  

              750       760       770       780       790       800
pF1KSD SRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIR
       ::::: :::::::::::.:::::::::::::.:::::::::::::::::.:::::: :::
CCDS44 SRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIR
            870       880       890       900       910       920  

              810       820         830       840       850        
pF1KSD GHVLPLALQMYGCRVIQKALESISSDQQ--SEMVKELDGHVLKCVKDQNGNHVVQKCIEC
       :::: :::::::::::::::: : ::::  .:::.:::::::::::::::::::::::::
CCDS44 GHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIEC
            930       940       950       960       970       980  

      860       870       880       890       900       910        
pF1KSD VQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQ
       ::::::::::::::::::.::::::::::::::::::  .::::::::::::::::::::
CCDS44 VQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQ
            990      1000      1010      1020      1030      1040  

      920       930       940       950       960       970        
pF1KSD YGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDE
       ::::::::::::::::::::::.::::.::.::::::::::::::::::::.:::.::::
CCDS44 YGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDE
           1050      1060      1070      1080      1090      1100  

      980       990      1000      1010      1020      1030        
pF1KSD VCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHI
       :: .::::::::::::::::::::::::::.:::.::::.::::::::.:::::::::::
CCDS44 VCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHI
           1110      1120      1130      1140      1150      1160  

     1040      1050      1060    
pF1KSD LAKLEKYYLKNSPDLGPIGGPPNGML
       ::::::::.::. ::::: :::::..
CCDS44 LAKLEKYYMKNGVDLGPICGPPNGII
           1170      1180        

>>CCDS74486.1 PUM2 gene_id:23369|Hs108|chr2               (929 aa)
 initn: 3896 init1: 3420 opt: 3772  Z-score: 2279.9  bits: 433.4 E(32554): 1.1e-120
Smith-Waterman score: 5987; 92.2% identity (92.2% similar) in 1008 aa overlap (57-1064:1-929)

         30        40        50        60        70        80      
pF1KSD PDDSTKDGQKGIFLGDDEWRETAWGASHHSMSQPIMVQRRSGQGFHGNSEVNAILSPRSE
                                     ::::::::::::::::::::::::::::::
CCDS74                               MSQPIMVQRRSGQGFHGNSEVNAILSPRSE
                                             10        20        30

         90       100       110       120       130       140      
pF1KSD SGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDL
               40        50        60        70        80        90

        150       160       170       180       190       200      
pF1KSD KQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNP
              100       110       120       130       140       150

        210       220       230       240       250       260      
pF1KSD TANKPLVEEFSNPETQNLDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TANKPLVEEFSNPETQNLDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQ
              160       170       180       190       200       210

        270       280       290       300       310       320      
pF1KSD RTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTA
              220       230       240       250       260       270

        330       340       350       360       370       380      
pF1KSD AGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQVL
              280       290       300       310       320       330

        390       400       410       420       430       440      
pF1KSD RAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQTGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQTGA
              340       350       360       370       380       390

        450       460       470       480       490       500      
pF1KSD LVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAAAAAGGTASSLTGSTNGLFRPIGTQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAAAAAGGTASSLTGSTNGLFRPIGTQP
              400       410       420       430       440       450

        510       520       530       540       550       560      
pF1KSD PQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLGAAIGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSTSLGFGSGNSLGAAIGSA
              460       470       480       490       500       510

        570       580       590       600       610       620      
pF1KSD LSGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPL
       :::::::                                                     
CCDS74 LSGFGSS-----------------------------------------------------
                                                                   

        630       640       650       660       670       680      
pF1KSD PSQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSS
                                 ::::::::::::::::::::::::::::::::::
CCDS74 --------------------------GGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSS
                                 520       530       540       550 

        690       700       710       720       730       740      
pF1KSD SQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQ
             560       570       580       590       600       610 

        750       760       770       780       790       800      
pF1KSD KLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPL
             620       630       640       650       660       670 

        810       820       830       840       850       860      
pF1KSD ALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF
             680       690       700       710       720       730 

        870       880       890       900       910       920      
pF1KSD IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH
             740       750       760       770       780       790 

        930       940       950       960       970       980      
pF1KSD VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP
             800       810       820       830       840       850 

        990      1000      1010      1020      1030      1040      
pF1KSD HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY
             860       870       880       890       900       910 

       1050      1060    
pF1KSD LKNSPDLGPIGGPPNGML
       ::::::::::::::::::
CCDS74 LKNSPDLGPIGGPPNGML
             920         




1064 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:50:13 2016 done: Thu Nov  3 00:50:14 2016
 Total Scan time:  3.460 Total Display time:  0.170

Function used was FASTA [36.3.4 Apr, 2011]
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