GENSCAN 1.0	Date run:  3-Nov-116	Time: 00:50:48

Sequence gi568815596r:20151588_20427360 : 275773 bp : 44.51% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    432    427    6                               1.05
 1.02 Term -   4252   4046  207  1  0   21   43   288 0.622  14.94
 1.01 Init -   4470   4279  192  0  0   85   50   180 0.874  12.92
 1.00 Prom -  10082  10043   40                              -4.36

 2.07 PlyA -  10147  10142    6                               1.05
 2.06 Term -  17346  16969  378  0  0   63   32   209 0.495   7.59
 2.05 Intr -  23059  22958  102  1  0   73   56    66 0.032   2.27
 2.04 Intr -  26447  26300  148  1  1   82   -6    92 0.010  -0.56
 2.03 Intr -  33010  32824  187  2  1   37  115    79 0.033   4.25
 2.02 Intr -  35696  35554  143  1  2   76   99    25 0.057   2.40
 2.01 Init -  44976  44900   77  0  2   36   57    92 0.043   1.48
 2.00 Prom -  48095  48056   40                              -7.06

 3.08 PlyA -  49237  49232    6                               1.05
 3.07 Term -  51348  51179  170  1  2   64   48   297 0.999  21.34
 3.06 Intr -  51635  51500  136  2  1  119  105   169 0.999  21.84
 3.05 Intr -  52704  52226  479  1  2  120  109   238 0.998  21.87
 3.04 Intr -  53837  53756   82  2  1   80   94    89 0.827   7.91
 3.03 Intr -  59048  58928  121  1  1   37   72    67 0.254   0.50
 3.02 Intr -  72121  71943  179  1  2   42   64   151 0.965   6.82
 3.01 Init -  73280  73215   66  2  0   93  117   237 0.999  26.17
 3.00 Prom -  86096  86057   40                              -2.76

 4.20 PlyA -  86204  86199    6                               1.05
 4.19 Term -  88941  88714  228  0  0    2   44   246 0.671   8.23
 4.18 Intr - 102427 102235  193  0  1   55   85   172 0.928  13.09
 4.17 Intr - 103397 103276  122  2  2   39   72    66 0.947  -0.61
 4.16 Intr - 103754 103629  126  2  0   92   75    26 0.841   2.58
 4.15 Intr - 104583 104446  138  0  0  112   55    94 0.998   9.16
 4.14 Intr - 106784 106656  129  2  0   59   91    45 0.427   2.79
 4.13 Intr - 110055 109969   87  0  0   91   -1   122 0.486   3.77
 4.12 Intr - 111049 111043    7  0  1   92   92     0 0.052  -5.46
 4.11 Intr - 111873 111606  268  1  1   57   82   106 0.057   3.49
 4.10 Intr - 131899 131756  144  2  0   37  119    43 0.207   2.55
 4.09 Intr - 139203 139065  139  0  1   62   74    74 0.333   3.44
 4.08 Intr - 142931 142789  143  0  2   -5   96    75 0.428  -0.93
 4.07 Intr - 146091 145966  126  1  0   60   92    62 0.415   4.45
 4.06 Intr - 156484 156391   94  1  1   68   95    51 0.868   3.34
 4.05 Intr - 156997 156727  271  0  1   69   98   184 0.719  15.04
 4.04 Intr - 160076 159907  170  2  2   50   60   170 0.947   9.14
 4.03 Intr - 167058 166950  109  2  1   68   99    31 0.045   2.49
 4.02 Intr - 199692 199585  108  2  0   49   90    45 0.002   0.20
 4.01 Init - 213776 213724   53  2  2   95   91    43 0.044   4.10
 4.00 Prom - 215590 215551   40                              -5.26

 5.00 Prom + 219637 219676   40                              -3.56
 5.01 Init + 226634 226850  217  1  1   54   68   102 0.186   3.66
 5.02 Intr + 235119 235330  212  1  2   34    3   185 0.017   3.23
 5.03 Intr + 238995 239173  179  2  2   55   70   101 0.021   3.72
 5.04 Intr + 239553 239641   89  0  2   23  121    31 0.047  -0.49
 5.05 Term + 244781 244971  191  0  2   95   37   141 0.550   7.31
 5.06 PlyA + 245630 245635    6                               1.05

 6.05 PlyA - 246006 246001    6                               1.05
 6.04 Term - 247871 247851   21  2  0  104   44    21 0.010  -2.39
 6.03 Intr - 260055 259955  101  1  2   76   88    74 0.774   6.03
 6.02 Intr - 263244 263058  187  0  1   37   67    81 0.042   0.16
 6.01 Init - 270931 270587  345  1  0   56   86   144 0.222   8.22

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  76817  76611  207  2  0   82   38   146 0.970   6.34
S.002 Term - 100129  99998  132  1  0   61   32   124 0.823   2.19
S.003 Init + 116126 116153   28  1  1   76   86    14 0.820  -0.24
S.004 Init + 239446 239641  196  0  1   92  121    54 0.862   8.52


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:20151588_20427360|GENSCAN_predicted_peptide_1|132_aa
MLSKGPLQYAQVFGCKKRATAVAPGKHSNGLIKVNGWHLEMIELHMLQYKLLEPLLLWAK
SDLLGGSHVAQICAVHQSISKALVAYYQKYMDEASKKDIKDTLIQNDQTLLVAGLLRCES
KKFGSSGACARY

>gi568815596r:20151588_20427360|GENSCAN_predicted_CDS_1|399_bp
atgctgtccaagggcccactgcagtatgcgcaggtctttggatgcaagaaaagggccaca
gctgtggcgcccggcaaacacagcaatggcctcatcaaggtgaatgggtggcacctggag
atgatcgagctgcatatgctacaatacaagctgctggaaccacttctgctctgggcaaag
agcgatttgctgggtggtagtcatgtggcccagatttgtgctgtccatcagtccatctcc
aaagccctggtggcctattaccagaaatatatggatgaggcttccaagaaggatatcaaa
gacaccctcatccagaatgaccagaccttgctggtagctggcctccttcgctgtgagtcc
aaaaagtttggaagctctggtgcctgtgctcgctactag

>gi568815596r:20151588_20427360|GENSCAN_predicted_peptide_2|344_aa
MCQAQCQALDIASDPGPVLTFKAVARASPLEKECRAAGQQAQGPAWYLGCFPSLLGPQIS
SSGNQVQKGAKCTEGSSELLPQNLLGGLWLTTSKEEASGSGCSQQEGLLMSPTLLKAPGK
LDLKKGLGNPVLSPSSLSSSKQALRISSEKLTSPELLVAENEASCVALPATLTFQGQSSC
PYVRSLVAASPKESGDCHHSLMLRDVAAWGMALCKLEALGQIPAHQPGEAPIPCPITADW
LRPLPGWSYSADCTFYPLMTSPTRKFAQVQNSEPHEEAAEEKDDSSGALRPSGSNPSCPV
PTLQPEFPIRHRALQQEDLPARASGPGRSICLPLAWMSARADAI

>gi568815596r:20151588_20427360|GENSCAN_predicted_CDS_2|1035_bp
atgtgccaggcacagtgccaggccctggacattgccagtgacccaggccccgtccttacc
ttcaaggctgttgcgagggcaagccctctggagaaggagtgcagagctgcaggccagcag
gcccagggtcccgcctggtatcttgggtgctttccttccctcctggggcctcagatctcc
tcatctggaaatcaagttcagaaaggtgcaaaatgtactgagggctcttctgagttgctg
ccgcagaacctgcttggtggcctgtggctcacgacgtcaaaggaggaggcatcgggaagt
ggatgttcccagcaagagggtcttctgatgtcccccaccctcctcaaagcaccagggaaa
ttggatcttaaaaagggccttgggaacccagtgctgagcccttcaagcctctcctcatcc
aaacaggctctcagaatatcctctgagaaactcacttctcctgagctgttggtggctgaa
aatgaggcctcctgtgtggccctcccagccactctcaccttccagggacagtcctcctgt
ccctacgtgcgcagcctggtagctgcatcacccaaggaatctggtgactgccaccactct
ctgatgctcagagatgttgctgcatggggcatggccctgtgcaagctggaggcactgggc
cagatccctgcccaccaaccgggcgaggctccgatcccctgccccatcacagctgactgg
ctgaggcccctccctggctggtcctacagcgctgactgcacgttctacccactcatgact
tctcccacaaggaagtttgcccaggtgcagaactcagagccacatgaagaggctgcagaa
gaaaaggacgactcgtctggggctcttagaccctcaggaagcaacccaagctgccctgtg
cccacactccagcctgaatttcctatcagacacagagctttacagcaggaagacctgccc
gccagagcctcggggcccggccgctccatctgcctgcccttggcctggatgtctgcccga
gcagatgcaatttaa

>gi568815596r:20151588_20427360|GENSCAN_predicted_peptide_3|410_aa
MRRAALWLWLCALALSLQPALPPRNAGLDGGWDLGRSQVSARAARCPSLPPEFASPAPAP
GAGVPGSLLRAGSAIPRDAEGRSRGFRGHTGQVQLTDQLPFPAPPRMTANQRPPALPKLV
PGQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQTPSTWKDTQLLTAIPTSPEP
TGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQEATPRPRETTQLPTTHLASTT
TATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHTEDGGPSATERAAEDGASSQL
PAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGASQGLLDRKEVLGGVIAGG
LVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA

>gi568815596r:20151588_20427360|GENSCAN_predicted_CDS_3|1233_bp
atgaggcgcgcggcgctctggctctggctgtgcgcgctggcgctgagcctgcagccggcc
ctgccgccccgtaacgccggccttgacgggggctgggacctgggccgcagccaggtgtca
gcgcgggccgcccggtgcccgagtctgccgcccgagttcgcctccccagcccccgcgccc
ggtgctggcgtcccggggtccctcctgcgggccggctcggccatccccagggatgcagag
gggagaagccggggatttcgtggccacacggggcaggtacagctgacagatcagcttccc
tttcctgctccaccacgaatgactgcgaatcagaggccccctgcgctgcccaagttagtg
cctgggcaaattgtggctactaatttgccccctgaagatcaagatggctctggggatgac
tctgacaacttctccggctcaggtgcaggtgctttgcaagatatcaccttgtcacagcag
accccctccacttggaaggacacgcagctcctgacggctattcccacgtctccagaaccc
accggcctggaggctacagctgcctccacctccaccctgccggctggagaggggcccaag
gagggagaggctgtagtcctgccagaagtggagcctggcctcaccgcccgggagcaggag
gccaccccccgacccagggagaccacacagctcccgaccactcatctggcctcaacgacc
acagccaccacggcccaggagcccgccacctcccacccccacagggacatgcagcctggc
caccatgagacctcaacccctgcaggacccagccaagctgaccttcacactccccacaca
gaggatggaggtccttctgccaccgagagggctgctgaggatggagcctccagtcagctc
ccagcagcagagggctctggggagcaggacttcacctttgaaacctcgggggagaatacg
gctgtagtggccgtggagcctgaccgccggaaccagtccccagtggatcagggggccacg
ggggcctcacagggcctcctggacaggaaagaggtgctgggaggggtcattgccggaggc
ctcgtggggctcatctttgctgtgtgcctggtgggtttcatgctgtaccgcatgaagaag
aaggacgaaggcagctactccttggaggagccgaaacaagccaacggcggggcctaccag
aagcccaccaaacaggaggaattctatgcctga

>gi568815596r:20151588_20427360|GENSCAN_predicted_peptide_4|884_aa
MTLMAGMWVQMQMSALYSTLEAKCQEYPTVGGAGADTRTPSWGKTVSNRVGSRGFCLPKS
FGNLMIQQKMDKKAYFLGMMNGERLHGELLGTRDAETDGPEKGDQKGKASPFEEDQNRDL
KQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNP
TANKPLVEEFSNPETQNLDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQ
RTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTA
AGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQVL
RAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGYQVLAPTAYYDQTGA
LVVGPGARTGLGAPVRLMAPTPVLISSAAAQAGGLTNGSGRYISAAPGAEAKYRSASSTS
SLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHG
SSFKEIFSSNTYGAVLSYDNSAFSGIPSEIYLRFGSLDQKLALATRIRGHVLPLALQMYG
CRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFK
GQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR
PEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYT
MMKDQYANYVVQKMIDMAEPAQRKIIMHKQPPPPNNGFKKKDKGGIHLTATCPQSELDAE
TVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVYIPCIYVK

>gi568815596r:20151588_20427360|GENSCAN_predicted_CDS_4|2655_bp
atgacgctgatggcaggcatgtgggtgcaaatgcagatgagtgcattgtacagcactctg
gaagcgaaatgccaggagtaccccacggtgggcggcgcgggcgcagacacccgcacaccc
agttgggggaaaacagtgagcaaccgggtaggaagccgaggcttttgcctaccaaaaagt
tttgggaacctgatgattcaacaaaagatggacaaaaaggcatatttcttggggatgatg
aatggagagagactgcatggggagcttctcggcactagagatgctgaaacagatggacct
gagaaaggagatcaaaaaggcaaggcttctccatttgaggaggaccaaaacagagatctt
aaacaaggagatgatgatgattctaaaataaatggcagaggtttgccaaatggaatggat
gccgattgcaaagattttaatcgtactcctggaagtcgtcaagcctctccaactgaagta
gttgagcgcttgggccccaatactaatccctcagaaggactggggcctcttcctaatcct
acagctaataaaccacttgttgaagaattttcaaatcctgaaactcagaatctggatgcc
atggaacaagttggtctggaatccttacagtttgactatcctggtaatcaggtaccaatg
gactcttcaggagctactgtaggcctttttgactacaattcccagcagcagctctttcag
aggactaatgcactaacagttcaacagttaactgcagctcaacagcagcaatatgcatta
gcagcagctcagcagccacatatagctggtgtattctcagcaggccttgctccagctgca
tttgtgccaaatccatacattattagtgctgctcctccagggaccgatccgtatactgca
gcaggattggctgcagcagctacattagcaggtccagcagtggttccacctcagtattac
ggcgttccatggggggtgtatccagccaacttatttcagcagcaagctgcagctgcggca
aataacacagccagtcagcaagcagcatcacaagctcagcctggacagcaacaggttctc
cgtgctggagcaggtcagcgtcctcttactcccaatcagggtcagcaagggcagcaagca
gaatcacttgcggcagctgcagcagcaaatccaacattggcttttggtcagggtcttgct
actggcatgccaggctatcaagtactagctccaactgcctattatgatcagactggtgcc
ttagtggttggccctggagcaaggactggccttggagctccagttcggttaatggctcca
acacctgttttaattagttcagcagcagcacaagctggaggactgacaaatggtagtggt
cgatatatctctgcagcacctggagcagaagcaaaatatcgaagtgcttcaagcacttcc
agtctatttagctccagcagccagctctttcctccttcccggcttcggtataataggtct
gatattatgccttctggccgcagtagattattggaagatttcagaaacaaccgcttccca
aaccttcagcttagagacttgattggacatatagttgagttttctcaagaccagcatggt
tctagctttaaggagatctttagcagcaacacctatggagctgtcctctcctatgataac
agtgctttttctggaataccttctgaaatctacctgaggtttgggagtctggatcaaaaa
ttagccctggctactcgtattcgtggtcatgttctacccttagccttgcagatgtatggc
tgccgcgttattcagaaagcattagaatctatttcttctgaccagcagagtgaaatggta
aaggagctggatggtcatgtgctcaaatgtgtgaaagatcagaatggaaaccatgttgta
caaaaatgtatcgaatgtgttcagccacagtcactacagttcatcattgatgctttcaag
ggacaagtatttgtgctttcaactcatccttatggctgcagagtaattcagcgcatccta
gagcattgcactgcagaacagaccttacctatcttagaagaactccaccaacatacagag
cagttggtacaggatcagtatggcaattatgttattcagcatgtactggaacacggtcga
cctgaagacaagagcaaaattgtttccgaaatcaggggaaaggttttagccctgagtcaa
cacaaatttgccagcaatgtagtagaaaagtgtgttactcatgcctcccgtgctgagaga
gctttactgattgacgaggtttgctgccagaatgatggtcctcacagtgccttatacacc
atgatgaaggaccagtatgccaattacgtggttcaaaagatgattgatatggctgaacct
gctcagagaaagataatcatgcacaagcaaccaccgccccccaacaatggctttaagaag
aaggacaagggaggcattcatctcacagccacttgcccacagagtgagctggatgctgaa
actgtgaagagcattctggctgaatacaagattcataatgccgatgtgactctacgtagt
gatgctacagctgatgacctcattgatgtggtggaaggaaacagagtttatatcccctgt
atctatgttaaataa

>gi568815596r:20151588_20427360|GENSCAN_predicted_peptide_5|295_aa
MPTEGKGRKQDWADGESELQYSFNREPSDPPGSCKTGTTLQSCASRGNGSGSLCSHIDGS
QDVDLSGKGMSLAFLVIFTYLLVARLATIASVSLSFAEHAMVPFYPGCASLPPAVLKNVA
VTSILLLMVANCWSLKLATMLTNPTRQCDWQGRAAQRGFLGEESGAKPPRADAACGNTAM
WSSMNNPDTKKGKACLRHKEICHNAVFECTVWYRAQTAAKEKALQMRAWLSQGSHLHSRH
HTPGLSLLVLAPVINHPQTEFLNIFLFLLSGFLVYFPLVHFQCQPRCLQLAALHL

>gi568815596r:20151588_20427360|GENSCAN_predicted_CDS_5|888_bp
atgcctacggaagggaaggggaggaagcaggattgggcagatggagaaagtgagctgcag
tacagcttcaacagagagccctctgaccctcccgggagctgcaaaactgggaccaccctg
cagagttgtgccagccggggcaacgggtctgggtctttgtgttctcacattgatgggtca
caggatgtggacctttctgggaaaggaatgagcttggccttcctggtcatcttcacatat
ttgctggtggccagactagctaccattgcttctgtttctctgagctttgctgagcatgca
atggttcccttttaccctggctgtgcctcactgccccctgctgtgctcaagaatgtggct
gtcaccagcatcctcctgctgatggtggctaactgctggagcttgaagctggccaccatg
ctgacaaatcccaccaggcagtgtgactggcaaggcagagcagcccaacgaggcttcctg
ggagaggagtctggagccaagcctccaagggcagatgcagcctgtggcaacacagctatg
tggagcagcatgaacaatccagacaccaaaaagggcaaggcatgtctgcgccacaaggaa
atatgtcacaacgctgtgttcgaatgcacagtttggtaccgtgcccaaacagcagcgaag
gaaaaagccttgcaaatgcgtgcctggctttcccaaggttcccaccttcattcccgccat
cacactcctggcttatctctactggtgctggcgcccgtcatcaaccatccccagacagag
ttcctaaacatcttcctcttcctgctcagtggcttcctggtgtacttcccacttgtccac
ttccagtgccagcccaggtgtttgcagctggccgctctacatctctag

>gi568815596r:20151588_20427360|GENSCAN_predicted_peptide_6|217_aa
MEVGADSKGLALSSEYLGAIMDQGLTPILGKFFKNSSVQCNLDSPVWDGSIVPQIWEVLG
HFPGPEVPCPHNPSESWGSAIQASLSRSPAFPNSHMCNGNAASQKQGPLALCLHRSTQMK
RNQKNNSGNMKKQGSLAPTKDQTSSPAMDPNQDEISELPEKEFRMLIIKLIKKAPKKEKV
VDTVLAPVWPMQLLHYVILELGLKLEYYAAGACVHDS

>gi568815596r:20151588_20427360|GENSCAN_predicted_CDS_6|654_bp
atggaagttggtgctgacagcaaggggctggctctatcctctgagtatctgggagccatc
atggatcaaggtctcactcccatattaggaaaattctttaaaaattcctccgtgcagtgc
aatcttgattctccagtgtgggatgggagcattgtgccccagatatgggaagtcctgggc
cacttccctggaccagaagtgccgtgtccccacaacccatcagagagctggggaagtgcc
atccaggcgagcctgagcaggtccccggcctttcccaattcccacatgtgcaatgggaat
gcagccagtcagaagcaagggcctctggctctgtgcctccacaggtcaacccaaatgaaa
aggaaccagaaaaacaattctggtaatatgaaaaaacaaggttctttagcacccacaaaa
gatcaaaccagctcaccagcaatggatccaaaccaagatgaaatatctgaattgccagaa
aaagaattcagaatgttgattattaagctaatcaagaaggcaccaaagaaagagaaggta
gttgatactgtgctcgcccccgtgtggcccatgcagctactgcactatgtcatcttggaa
ctgggactaaagctggagtattatgctgcaggcgcatgtgtccatgacagctag