GENSCAN 1.0	Date run:  3-Nov-116	Time: 00:38:19

Sequence gi568815585r:31037321_31261582 : 224262 bp : 43.24% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   2635   2689   55  0  1   68   54    51 0.264   1.15
 1.02 Intr +   4595   4708  114  0  0   54   76    79 0.371   3.72
 1.03 Term +   6743   6852  110  0  2   33   50   128 0.518   2.17
 1.04 PlyA +   7414   7419    6                               1.05

 2.32 PlyA -   7633   7628    6                               1.05
 2.31 Term -   8696   8591  106  1  1   71   44   110 0.398   2.78
 2.30 Intr -   9593   9449  145  0  1   47   54    84 0.111   0.24
 2.29 Intr -  15027  14891  137  2  2   92  105    -4 0.332   1.91
 2.28 Intr -  16010  15906  105  1  0   20  105    81 0.306   2.33
 2.27 Intr -  32745  32642  104  0  2  101   96    70 0.907   8.07
 2.26 Intr -  41733  41656   78  0  0   72   47    68 0.047   0.85
 2.25 Intr -  48995  48882  114  2  0   61   38    94 0.022   2.34
 2.24 Intr -  74860  74810   51  1  0   65   91    36 0.053   0.70
 2.23 Intr -  76431  76358   74  1  2   68  111    17 0.049   1.13
 2.22 Intr -  81836  81756   81  0  0  110   95   -17 0.061   0.81
 2.21 Intr -  87048  86986   63  1  0  102   90    40 0.073   4.29
 2.20 Intr - 100204 100048  157  1  1  108   23   137 0.006   8.78
 2.19 Intr - 101248 101087  162  1  0   60  113   156 0.828  15.47
 2.18 Intr - 101580 101461  120  0  0   65  113   131 0.999  13.99
 2.17 Intr - 101787 101680  108  0  0   44   78    86 0.911   3.68
 2.16 Intr - 102989 102864  126  2  0   76   91    93 0.988   9.28
 2.15 Intr - 103939 103802  138  1  0   80  107    66 0.995   8.36
 2.14 Intr - 106603 106472  132  1  0   68   87    56 0.902   4.34
 2.13 Intr - 108448 108243  206  2  2  104   95   174 0.998  18.62
 2.12 Intr - 110772 110639  134  2  2  127   82    37 0.999   7.29
 2.11 Intr - 111160 111054  107  1  2   95   75    36 0.995   2.01
 2.10 Intr - 112862 112634  229  1  1   25   80   150 0.977   5.77
 2.09 Intr - 113871 113627  245  0  2   43   89   216 0.690  13.50
 2.08 Intr - 114422 114289  134  0  2   13   98    74 0.684   1.26
 2.07 Intr - 115631 115532  100  2  1  106   95    38 0.993   5.98
 2.06 Intr - 117435 117313  123  0  0   81   89   101 0.994  10.28
 2.05 Intr - 118334 118194  141  2  0   65   85    69 0.954   4.85
 2.04 Intr - 121543 121486   58  0  1   95   91     2 0.972   0.09
 2.03 Intr - 123807 123610  198  2  0   88   55    65 0.753   1.67
 2.02 Intr - 124478 124156  323  2  2   61  105   252 0.788  18.86
 2.01 Init - 124802 124662  141  2  0   46  117   109 0.780   9.74
 2.00 Prom - 129001 128962   40                              -5.06

 3.00 Prom + 131811 131850   40                              -4.56
 3.01 Init + 162765 162834   70  2  1   86  106   211 0.999  21.91
 3.02 Term + 163400 163614  215  0  2   93   38   118 0.984   4.69
 3.03 PlyA + 164558 164563    6                               1.05

 4.06 PlyA - 165735 165730    6                               1.05
 4.05 Term - 166084 165936  149  2  2   42   43   165 0.523   5.46
 4.04 Intr - 170673 170649   25  0  1  105   78    22 0.118   0.50
 4.03 Intr - 176418 176326   93  0  0  125   73   -20 0.130   0.36
 4.02 Intr - 186664 186558  107  2  2   81   83    35 0.049   2.23
 4.01 Init - 190830 190578  253  0  1   53   45   164 0.113   6.17
 4.00 Prom - 203633 203594   40                              -3.46

 5.00 Prom + 208466 208505   40                              -6.06
 5.01 Sngl + 214211 214591  381  1  0   58   38   327 0.647  20.87
 5.02 PlyA + 214819 214824    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  23658  23824  167  1  2  128   44    87 0.867   6.38
S.002 Term - 100204  99998  207  1  0  108   37   190 0.993  13.24
S.003 Init - 145849 145687  163  1  1   97   81   108 0.841   9.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815585r:31037321_31261582|GENSCAN_predicted_peptide_1|92_aa
MAFKITKNYEQSSVEEKNEFGTGSTSCIHSAPSLAFDKRSNCTITNHFVIFIDISEGGIH
TAYGSDGAPGCVLFGFQAWDSPKWTPAQGQDE

>gi568815585r:31037321_31261582|GENSCAN_predicted_CDS_1|279_bp
atggcttttaaaatcaccaagaattatgaacagagtagtgttgaggagaagaatgagttt
ggcacgggctccacctcttgcatccattcagccccttcactggcttttgacaagaggtcc
aactgcaccatcacaaatcattttgtgattttcatagacatcagtgaagggggcatccac
acagcctacggctcggatggtgcccctggatgtgtgctgttcggcttccaggcctgggac
tcccccaaatggaccccggcacagggacaggatgagtag

>gi568815585r:31037321_31261582|GENSCAN_predicted_peptide_2|1379_aa
MARERPCRCHGNGGRSPGTGCPLGRIFPEGSRRRKRKWHVEGPVEAPGFLSASRRCPRGS
RRLLTGRGCLCVLLSVRGTARPRGPEQNAARAESGGRRSRQGAGGRRPRPEAEADREPAM
SVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPLQPAPSAAAPVSPPGLSELAEPPPA
CPPPFAHIFAHRGAGLPAFFFRIVNLEMNWKLPELVSLLVQSVISFGSKNRTIGVAAKNQ
QITHANNTVSNFKRFHGRAFNDPFIQKEKENLSYDLVPLKNGGVGIKVMYMGEEHLFSVE
QITAMLLTKLKETAENSLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMT
AVALNYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKN
FDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDK
DVSGKMNRSQFEELCAELLQKIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIA
KFFGKDISTTLNADEAVARGCALQCAILSPAFKVREFSVTDAVPFPISLIWNHDSEDTEG
VHEVFSRNHAAPFSKVLTFLRRGPFELEAFYSDPQGVPYPEAKIGRFVVQNVSAQKDGEK
SRVKVKVRVNTHGIFTISTASMVEKVPTEENEMSSEADMECLNQRPPENPDTDKNVQQDN
SEAGTQPQVQTDAQQTSQSPPSPELTSEENKIPDADKANEKKVDQPPEAKKPKIKVVNVE
LPIEANLVWQLGKDLLNMYIETEGKMIMQDKLEKERNDAKNAVEEYVYEFRDKLCGPYEK
FICEQDHQNFLRLLTETEDWLYEEGEDQAKQAYVDKLEELMKIGTPVKVRFQEAEERPKM
FEELGQRLQHYAKIAADFRNKDEKYNHIDESEMKKVEKSVNEVMEWMNNVMNAQAKKSLD
QDPVVRAQEIKTKIKELNNTCEPVVTQPKPKIESPKLERTPNGPNIDKKEEDLEDKNNFG
AEPPHQNGQTNWKLHLEVSGTLLGMIYRAKLPRESVDFISRESIAQRIAAADTVLGRGQI
GMCIQQGERYWCGKLLVANLTILLDVIDMHKALLVSQLALVVKLKLEDEFRAVGIYVPYH
LEGEKLSAGGAEEAKSLLLLRKVGPLITITDEEMGAVELGQWVGLAGQQAGPSVFGLFRD
SCLLLLLLLLFLLLLRPTATTDDLLMPLLKSVATGQQLDKSVSSLPRRNQRKTPLVSKKH
TGSHFFTASSCRICGILQVLVCLLSPVLRTLCTSPPDRDIEGQVIATAGVAAAAAAALKA
LYKTCSVLPVRQLGHRSAGEGAAAWASHDSSPSTRSSSFRLLLTHKEHFNLMNHQQHFL

>gi568815585r:31037321_31261582|GENSCAN_predicted_CDS_2|4140_bp
atggcacgggagcggccctgtcgctgccatggcaacggcggccgttctccggggaccggc
tgcccattgggtagaatctttccagaaggctcgagaagaaggaagcggaagtggcacgtg
gaggggccggtggaggcgccgggtttcttatcagccagccgccgctgtccccgggggagt
aggaggctcctgacaggccgcggctgtctgtgtgtccttctgagtgtcagaggaacggcc
agaccccgcgggccggagcagaacgcggccagggcagaaagcggcggcaggagaagcagg
cagggggccggaggacgcagaccgagacccgaggcggaggcggaccgcgagccggccatg
tcggtggtggggttggacgtgggctcgcagagctgctacatcgcggtagcccgggccggg
ggcatcgagaccatcgccaatgagttcagcgaccggtgcaccccgctgcagcctgcgcct
tccgcggccgcccccgtatccccacccggcctctctgagctggctgagccgcctccagct
tgtcctcctcccttcgcgcatatctttgcgcaccgcggagcggggctgccggcctttttc
ttccgcattgtgaatctcgaaatgaactggaagcttccagagcttgtgtcgctgcttgtc
cagtcagtcatatcatttggatcaaaaaatagaacaatcggagttgcagccaaaaatcag
caaatcactcatgcaaacaatacggtgtctaacttcaaaagatttcatggccgagcattc
aatgaccccttcattcaaaaggagaaggaaaacttgagttacgatttggttccattgaaa
aatggtggagttggaataaaggtaatgtacatgggtgaagaacatctatttagtgtggag
cagataacagccatgttgttgactaagctgaaggaaactgctgaaaacagcctcaagaaa
ccagtaacagattgtgttatttcagtcccctccttctttacagatgctgagaggcgatct
gtgttagatgctgcacagattgttggcctaaactgtttaagacttatgaatgacatgaca
gctgttgctttgaattacggaatttataagcaggatctcccaagcctggatgagaaacct
cggatagtggtttttgttgatatgggacattcagcttttcaagtgtctgcttgtgctttt
aacaagggaaaattgaaggtactgggaacagcttttgatcctttcttaggaggaaaaaac
ttcgatgaaaagttagtggaacatttttgtgcagaatttaaaactaagtacaagttggat
gcaaaatccaaaatacgagcactcctacgtctgtatcaggaatgtgaaaaactgaaaaag
ctaatgagctctaacagcacagaccttccactgaatatcgaatgctttatgaatgataaa
gatgtttccggaaagatgaacaggtcacaatttgaagaactctgtgctgaacttctgcaa
aagatagaagtacccctttattcactgttggaacaaactcatctcaaagtagaagatgtg
agtgcagttgagattgttggaggcgctacacgaattccagctgtgaaggaaagaattgcc
aaattctttggaaaagatattagcacaacactcaatgcagatgaagcagtagccagagga
tgtgcattacagtgtgcaatactttccccggcatttaaagttagagaattttccgtcaca
gatgcagttccttttccaatatctctgatctggaaccatgattcagaagatactgaaggt
gttcatgaagtctttagtcgaaaccatgctgctcctttctccaaagttctcacctttctg
agaagggggccttttgagctagaagctttctattctgatccccaaggagttccatatcca
gaagcaaaaataggccgctttgtagttcagaatgtttctgcacagaaagatggagaaaaa
tctagagtaaaagtcaaagtgcgagtcaacacccatggcattttcaccatctctacggca
tctatggtggagaaagtcccaactgaggagaatgaaatgtcttctgaagctgacatggag
tgtctgaatcagagaccaccagaaaacccagacactgataaaaatgtccagcaagacaac
agtgaagctggaacacagccccaggtacaaactgatgctcaacaaacctcacagtctccc
ccttcacctgaacttacctcagaagaaaacaaaatcccagatgctgacaaagcaaatgaa
aaaaaagttgaccagcctccagaagctaaaaagcccaaaataaaggtggtgaatgttgag
ctgcctattgaagccaacttggtctggcagttagggaaagaccttcttaacatgtatatt
gagacagagggtaagatgataatgcaagataaattggaaaaagaaaggaatgatgctaaa
aatgcagttgaggaatatgtgtatgagttcagagacaagctgtgtggaccatatgaaaaa
tttatatgtgagcaggatcatcaaaattttttgagactcctcacagaaactgaagactgg
ctgtatgaagaaggagaggaccaagctaaacaagcatatgttgacaagttggaagaatta
atgaaaattggcactccagttaaagttcggtttcaggaagctgaagaacggccaaaaatg
tttgaagaactaggacagaggctgcagcattatgccaagatagcagctgacttcagaaat
aaggatgagaaatacaaccatattgatgagtctgaaatgaaaaaagtggagaagtctgtt
aatgaagtgatggaatggatgaataatgtcatgaatgctcaggctaaaaagagtcttgat
caggatccagttgtacgtgctcaggaaattaaaacaaaaatcaaggaattgaacaacaca
tgtgaacccgttgtaacacaaccgaaaccaaaaattgaatcacccaaactggaaagaact
ccaaatggcccaaatattgataaaaaggaagaagatttagaagacaaaaacaattttggt
gctgaacctccacatcagaatggtcagaccaattggaagctgcacctggaggtatctgga
accctgcttggcatgatttatagagccaagctgcccagggaaagtgttgattttatttct
agggaatccattgctcaaaggatcgctgcagcagacactgtcttaggacggggtcagatc
gggatgtgcatccagcagggagagaggtactggtgtggcaaattattggttgctaatttg
accatactcctggatgtcatagacatgcacaaagccttgctggttagccagctggcgcta
gtagtgaaactgaaattggaagatgagttcagggctgtgggcatctatgttccctaccat
ttggagggagaaaagctgtctgcaggaggagctgaggaggccaagtctttattactgctc
cggaaggtgggtcctcttatcaccattacagatgaggaaatgggggctgtagaacttggt
cagtgggtgggcctggccgggcagcaggcaggaccatctgtgtttgggctcttcagggat
tcctgtcttctgttgctgctgctgctgctgtttctgcttttgctcaggcccacagccacc
acagatgacctgctgatgcctctgctgaaatccgtggccactggccaacagcttgacaag
agtgtcagctccctcccgagacgaaatcagaggaaaacgcctctagtttctaagaagcac
acagggagccacttctttaccgctagctcctgcaggatctgtgggatcctgcaggtgctg
gtttgcctcctgagccctgtcctaaggacactctgcacatcgcctcctgacagagacatt
gaaggccaggttatagccactgcaggagtggcagcagcagcagcagcagctttgaaagcc
ttatataaaacatgctcggtattgcccgtgaggcagcttggccacagatcagctggagag
ggtgcggcggcatgggccagccacgattcttcgccctccacacggagcagcagcttccgt
ttacttctgactcacaaggagcactttaacctgatgaatcaccagcagcacttcctgtga

>gi568815585r:31037321_31261582|GENSCAN_predicted_peptide_3|94_aa
MRPPACWWLLAPPALLALLTCSLGPSGRALAPEDKRPARRQPFPDSDPEEDRGARWASAG
AGAAGRLAPVSGLRWGHQGTRLRAEQCLPGLLLL

>gi568815585r:31037321_31261582|GENSCAN_predicted_CDS_3|285_bp
atgcggccgcccgcctgctggtggctgctcgcgccgccggcgctgctcgcgctcctcacc
tgctccctggggccttcgggacgtgccctggcccctgaggataagcggccagctcggcgc
cagcccttcccggattccgacccggaggaggacaggggcgcccgctgggcctccgcggga
gctggcgcggcggggaggcttgctcctgtctcgggtctccgctggggacatcaggggaca
cgtctgcgagcagagcagtgcttgcccggtctcctgctgctgtaa

>gi568815585r:31037321_31261582|GENSCAN_predicted_peptide_4|208_aa
MLAVFTSLLEMHLKAASFLQRRTGRKPEYVLPTKTIRGLANGSSKAASQRNTLGLPRFWA
YNKEMDKTVIVSAPCHQTGMSAEEELAFQVSMENSGEEARRAYCSLLVSWNPGLSIMKLE
STYHQLTYIFVYHLSYMSADYKLHKGRNTVIREEMEQELTVGYWQTPLGQVHDLGSHANS
EVLDYLDDKESIQKIKICASNICILLKK

>gi568815585r:31037321_31261582|GENSCAN_predicted_CDS_4|627_bp
atgctggcagtattcaccagcctgctagagatgcacctgaaggcagccagctttttacaa
cggcgaacaggaaggaaacccgagtatgtcctgcccacaaagaccatcagagggcttgcc
aatggcagtagcaaggctgcctcccagagaaacacgttaggcctccccaggttctgggcc
tataacaaagaaatggataaaacagtgattgtgtcagcaccctgccaccagacaggaatg
tcggcagaggaagagctcgccttccaggtctccatggaaaatagtggagaggaagcaaga
agagcatattgttcccttcttgtttcctggaacccaggcttatccatcatgaaactggag
agcacttatcaccaactgacatatatatttgtttatcacttatcttacatgtcagctgat
tataagctccacaagggcaggaatacagttataagggaagaaatggaacaagaattaact
gttggctactggcaaactcccctgggtcaagtccatgacctggggagccatgccaactcg
gaggtcctggactacctggatgacaaagaatccatccagaagattaaaatctgtgccagt
aatatctgcatactgcttaagaaataa

>gi568815585r:31037321_31261582|GENSCAN_predicted_peptide_5|126_aa
MELKNTAQALCEAYPSTNSRIDQVEERISEIEDQLNEIKQEDKIRERRVKRNEQSLQEIW
DCVKRPNLHLIAVPESDGENGTKLENTLQDIIRENFPNVAKQVNIQTQKYGEHYKDTPRE
EQPQDT

>gi568815585r:31037321_31261582|GENSCAN_predicted_CDS_5|381_bp
atggagctgaaaaacacagcacaagcactttgtgaagcatacccaagtaccaatagccga
atcgatcaagtggaagaaaggatatcagagattgaagatcaactcaatgaaataaagcaa
gaagacaagattagagaaagaagagtgaaaagaaatgaacaaagcctccaagaaatatgg
gactgtgtgaaaagaccaaatctacatttgattgctgtacctgaaagtgatggcgagaat
ggaaccaagttggaaaacactcttcaggatattatccgggagaacttccccaacgtagca
aagcaggtcaacattcaaactcagaaatatggagaacactacaaagatactcctcgagaa
gagcaaccccaagacacatag