Result of FASTA (ccds) for pF1KSDA0190
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0190, 803 aa
  1>>>pF1KSDA0190 803 - 803 aa - 803 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3062+/-0.000968; mu= 6.8465+/- 0.058
 mean_var=160.8891+/-33.157, 0's: 0 Z-trim(110.0): 61  B-trim: 145 in 2/51
 Lambda= 0.101114
 statistics sampled from 11211 (11270) to 11211 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.346), width:  16
 Scan time:  3.450

The best scores are:                                      opt bits E(32554)
CCDS45537.1 USP10 gene_id:9100|Hs108|chr16         ( 798) 5293 784.7       0
CCDS62004.1 USP10 gene_id:9100|Hs108|chr16         ( 802) 5253 778.8       0


>>CCDS45537.1 USP10 gene_id:9100|Hs108|chr16              (798 aa)
 initn: 5293 init1: 5293 opt: 5293  Z-score: 4182.0  bits: 784.7 E(32554):    0
Smith-Waterman score: 5293; 100.0% identity (100.0% similar) in 798 aa overlap (6-803:1-798)

               10        20        30        40        50        60
pF1KSD MKRAAMALHSPQYIFGDFSPDEFNQFFVTPRSSVELPPYSGTVLCGTQAVDKLPDGQEYQ
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45      MALHSPQYIFGDFSPDEFNQFFVTPRSSVELPPYSGTVLCGTQAVDKLPDGQEYQ
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KSD RIEFGVDEVIEPSDTLPRTPSYSISSTLNPQAPEFILGCTASKITPDGITKEASYGSIDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RIEFGVDEVIEPSDTLPRTPSYSISSTLNPQAPEFILGCTASKITPDGITKEASYGSIDC
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KSD QYPGSALALDGSSNVEAEVLENDGVSGGLGQRERKKKKKRPPGYYSYLKDGGDDSISTEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QYPGSALALDGSSNVEAEVLENDGVSGGLGQRERKKKKKRPPGYYSYLKDGGDDSISTEA
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KSD LVNGHANSAVPNSVSAEDAEFMGDMPPSVTPRTCNSPQNSTDSVSDIVPDSPFPGALGSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LVNGHANSAVPNSVSAEDAEFMGDMPPSVTPRTCNSPQNSTDSVSDIVPDSPFPGALGSD
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KSD TRTAGQPEGGPGADFGQSCFPAEAGRDTLSRTAGAQPCVGTDTTENLGVANGQILESSGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TRTAGQPEGGPGADFGQSCFPAEAGRDTLSRTAGAQPCVGTDTTENLGVANGQILESSGE
         240       250       260       270       280       290     

              310       320       330       340       350       360
pF1KSD GTATNGVELHTTESIDLDPTKPESASPPADGTGSASGTLPVSQPKSWASLFHDSKPSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GTATNGVELHTTESIDLDPTKPESASPPADGTGSASGTLPVSQPKSWASLFHDSKPSSSS
         300       310       320       330       340       350     

              370       380       390       400       410       420
pF1KSD PVAYVETKYSPPAISPLVSEKQVEVKEGLVPVSEDPVAIKIAELLENVTLIHKPVSLQPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PVAYVETKYSPPAISPLVSEKQVEVKEGLVPVSEDPVAIKIAELLENVTLIHKPVSLQPR
         360       370       380       390       400       410     

              430       440       450       460       470       480
pF1KSD GLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPMIDSFVRLMNEFTNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPMIDSFVRLMNEFTNM
         420       430       440       450       460       470     

              490       500       510       520       530       540
pF1KSD PVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTVNKSSLSEKGRQEDAEEYLGFILNGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTVNKSSLSEKGRQEDAEEYLGFILNGL
         480       490       500       510       520       530     

              550       560       570       580       590       600
pF1KSD HEEMLNLKKLLSPSNEKLTISNGPKNHSVNEEEQEEQGEGSEDEWEQVGPRNKTSVTRQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HEEMLNLKKLLSPSNEKLTISNGPKNHSVNEEEQEEQGEGSEDEWEQVGPRNKTSVTRQA
         540       550       560       570       580       590     

              610       620       630       640       650       660
pF1KSD DFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDALESLVARES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDALESLVARES
         600       610       620       630       640       650     

              670       680       690       700       710       720
pF1KSD VQGYTTKTKQEVEISRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLIKNIEYPVDLEISKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VQGYTTKTKQEVEISRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLIKNIEYPVDLEISKE
         660       670       680       690       700       710     

              730       740       750       760       770       780
pF1KSD LLSPGVKNKNFKCHRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LLSPGVKNKNFKCHRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQ
         720       730       740       750       760       770     

              790       800   
pF1KSD YQVVKPTAERTAYLLYYRRVDLL
       :::::::::::::::::::::::
CCDS45 YQVVKPTAERTAYLLYYRRVDLL
         780       790        

>>CCDS62004.1 USP10 gene_id:9100|Hs108|chr16              (802 aa)
 initn: 5251 init1: 5251 opt: 5253  Z-score: 4150.5  bits: 778.8 E(32554):    0
Smith-Waterman score: 5253; 99.5% identity (99.5% similar) in 799 aa overlap (8-803:4-802)

               10           20        30        40        50       
pF1KSD MKRAAMALHSP---QYIFGDFSPDEFNQFFVTPRSSVELPPYSGTVLCGTQAVDKLPDGQ
              : ::   ::::::::::::::::::::::::::::::::::::::::::::::
CCDS62     MPWLPSPGIGQYIFGDFSPDEFNQFFVTPRSSVELPPYSGTVLCGTQAVDKLPDGQ
                   10        20        30        40        50      

        60        70        80        90       100       110       
pF1KSD EYQRIEFGVDEVIEPSDTLPRTPSYSISSTLNPQAPEFILGCTASKITPDGITKEASYGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EYQRIEFGVDEVIEPSDTLPRTPSYSISSTLNPQAPEFILGCTASKITPDGITKEASYGS
         60        70        80        90       100       110      

       120       130       140       150       160       170       
pF1KSD IDCQYPGSALALDGSSNVEAEVLENDGVSGGLGQRERKKKKKRPPGYYSYLKDGGDDSIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 IDCQYPGSALALDGSSNVEAEVLENDGVSGGLGQRERKKKKKRPPGYYSYLKDGGDDSIS
        120       130       140       150       160       170      

       180       190       200       210       220       230       
pF1KSD TEALVNGHANSAVPNSVSAEDAEFMGDMPPSVTPRTCNSPQNSTDSVSDIVPDSPFPGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TEALVNGHANSAVPNSVSAEDAEFMGDMPPSVTPRTCNSPQNSTDSVSDIVPDSPFPGAL
        180       190       200       210       220       230      

       240       250       260       270       280       290       
pF1KSD GSDTRTAGQPEGGPGADFGQSCFPAEAGRDTLSRTAGAQPCVGTDTTENLGVANGQILES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GSDTRTAGQPEGGPGADFGQSCFPAEAGRDTLSRTAGAQPCVGTDTTENLGVANGQILES
        240       250       260       270       280       290      

       300       310       320       330       340       350       
pF1KSD SGEGTATNGVELHTTESIDLDPTKPESASPPADGTGSASGTLPVSQPKSWASLFHDSKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SGEGTATNGVELHTTESIDLDPTKPESASPPADGTGSASGTLPVSQPKSWASLFHDSKPS
        300       310       320       330       340       350      

       360       370       380       390       400       410       
pF1KSD SSSPVAYVETKYSPPAISPLVSEKQVEVKEGLVPVSEDPVAIKIAELLENVTLIHKPVSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SSSPVAYVETKYSPPAISPLVSEKQVEVKEGLVPVSEDPVAIKIAELLENVTLIHKPVSL
        360       370       380       390       400       410      

       420       430       440       450       460       470       
pF1KSD QPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPMIDSFVRLMNEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPMIDSFVRLMNEF
        420       430       440       450       460       470      

       480       490       500       510       520       530       
pF1KSD TNMPVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTVNKSSLSEKGRQEDAEEYLGFIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TNMPVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTVNKSSLSEKGRQEDAEEYLGFIL
        480       490       500       510       520       530      

       540       550       560       570       580       590       
pF1KSD NGLHEEMLNLKKLLSPSNEKLTISNGPKNHSVNEEEQEEQGEGSEDEWEQVGPRNKTSVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 NGLHEEMLNLKKLLSPSNEKLTISNGPKNHSVNEEEQEEQGEGSEDEWEQVGPRNKTSVT
        540       550       560       570       580       590      

       600       610       620       630       640       650       
pF1KSD RQADFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDALESLVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 RQADFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDALESLVA
        600       610       620       630       640       650      

       660       670       680       690       700       710       
pF1KSD RESVQGYTTKTKQEVEISRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLIKNIEYPVDLEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 RESVQGYTTKTKQEVEISRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLIKNIEYPVDLEI
        660       670       680       690       700       710      

       720       730       740       750       760       770       
pF1KSD SKELLSPGVKNKNFKCHRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SKELLSPGVKNKNFKCHRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKV
        720       730       740       750       760       770      

       780       790       800   
pF1KSD INQYQVVKPTAERTAYLLYYRRVDLL
       ::::::::::::::::::::::::::
CCDS62 INQYQVVKPTAERTAYLLYYRRVDLL
        780       790       800  




803 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:33:04 2016 done: Thu Nov  3 00:33:04 2016
 Total Scan time:  3.450 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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