FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8765, 223 aa
  1>>>pF1KB8765 223 - 223 aa - 223 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1936+/-0.000673; mu= 6.9779+/- 0.041
 mean_var=132.7707+/-26.175, 0's: 0 Z-trim(115.4): 5  B-trim: 9 in 1/54
 Lambda= 0.111307
 statistics sampled from 15969 (15973) to 15969 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.491), width:  16
 Scan time:  2.220

The best scores are:                                      opt bits E(32554)
CCDS3419.1 FGFBP2 gene_id:83888|Hs108|chr4         ( 223) 1584 264.5   4e-71


>>CCDS3419.1 FGFBP2 gene_id:83888|Hs108|chr4              (223 aa)
 initn: 1584 init1: 1584 opt: 1584  Z-score: 1390.4  bits: 264.5 E(32554): 4e-71
Smith-Waterman score: 1584; 99.6% identity (99.6% similar) in 223 aa overlap (1-223:1-223)

               10        20        30        40        50        60
pF1KB8 MKFVPCLLLVTLSCLGTLGQAPRQKQGSTGEEFHFQTGGRDSCTMRPSSLGQGAGEVWLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKFVPCLLLVTLSCLGTLGQAPRQKQGSTGEEFHFQTGGRDSCTMRPSSLGQGAGEVWLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VDCRNTDQTYWCEYRGQPSMCQAFAADPKSYWNQALQELRRLHHACQGAPVLRPSVCREA
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS34 VDCRNTDQTYWCEYRGQPSMCQAFAADPKPYWNQALQELRRLHHACQGAPVLRPSVCREA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GPQAHMQQVTSSLKGSPEPNQQPEAGTPSLRPKATVKLTEATQLGKDSMEELGKAKPTTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPQAHMQQVTSSLKGSPEPNQQPEAGTPSLRPKATVKLTEATQLGKDSMEELGKAKPTTR
              130       140       150       160       170       180

              190       200       210       220   
pF1KB8 PTAKPTQPGPRPGGNEEAKKKAWEHCWKPFQALCAFLISFFRG
       :::::::::::::::::::::::::::::::::::::::::::
CCDS34 PTAKPTQPGPRPGGNEEAKKKAWEHCWKPFQALCAFLISFFRG
              190       200       210       220   




223 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 09:39:22 2016 done: Sat Nov  5 09:39:22 2016
 Total Scan time:  2.220 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]