FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1983, 406 aa
  1>>>pF1KA1983 406 - 406 aa - 406 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8842+/-0.00106; mu= 1.2072+/- 0.064
 mean_var=468.5699+/-94.808, 0's: 0 Z-trim(116.8): 144  B-trim: 0 in 0/54
 Lambda= 0.059250
 statistics sampled from 17353 (17496) to 17353 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.537), width:  16
 Scan time:  3.360

The best scores are:                                      opt bits E(32554)
CCDS32838.1 CCBE1 gene_id:147372|Hs108|chr18       ( 406) 2959 266.8 2.6e-71


>>CCDS32838.1 CCBE1 gene_id:147372|Hs108|chr18            (406 aa)
 initn: 2959 init1: 2959 opt: 2959  Z-score: 1393.8  bits: 266.8 E(32554): 2.6e-71
Smith-Waterman score: 2959; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)

               10        20        30        40        50        60
pF1KA1 MVPPPPSRGGAARGQLGRSLGPLLLLLALGHTWTYREEPEDGDREICSESKIATTKYPCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MVPPPPSRGGAARGQLGRSLGPLLLLLALGHTWTYREEPEDGDREICSESKIATTKYPCL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 KSSGELTTCYRKKCCKGYKFVLGQCIPEDYDVCAEAPCEQQCTDNFGRVLCTCYPGYRYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KSSGELTTCYRKKCCKGYKFVLGQCIPEDYDVCAEAPCEQQCTDNFGRVLCTCYPGYRYD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 RERHRKREKPYCLDIDECASSNGTLCAHICINTLGSYRCECREGYIREDDGKTCTRGDKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RERHRKREKPYCLDIDECASSNGTLCAHICINTLGSYRCECREGYIREDDGKTCTRGDKY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 PNDTGHEKSENMVKAGTCCATCKEFYQMKQTVLQLKQKIALLPNNAADLGKYITGDKVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PNDTGHEKSENMVKAGTCCATCKEFYQMKQTVLQLKQKIALLPNNAADLGKYITGDKVLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 SNTYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SNTYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 RRGPVGPPGAPGRDGSKGERGAPGPRGSPGPPGSFDFLLLMLADIRNDITELQEKVFGHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RRGPVGPPGAPGRDGSKGERGAPGPRGSPGPPGSFDFLLLMLADIRNDITELQEKVFGHR
              310       320       330       340       350       360

              370       380       390       400      
pF1KA1 THSSAEEFPLPQEFPSYPEAMDLGSGDDHPRRTETRDLRAPRDFYP
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 THSSAEEFPLPQEFPSYPEAMDLGSGDDHPRRTETRDLRAPRDFYP
              370       380       390       400      




406 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:21:19 2016 done: Wed Nov  2 22:21:19 2016
 Total Scan time:  3.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]