Result of FASTA (omim) for pF1KA1796
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1796, 376 aa
  1>>>pF1KA1796 376 - 376 aa - 376 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4326+/-0.000381; mu= 15.9661+/- 0.024
 mean_var=67.6169+/-13.482, 0's: 0 Z-trim(112.2): 44  B-trim: 4 in 1/54
 Lambda= 0.155972
 statistics sampled from 21015 (21044) to 21015 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.247), width:  16
 Scan time:  7.020

The best scores are:                                      opt bits E(85289)
NP_001092805 (OMIM: 608511) phytanoyl-CoA hydroxyl ( 330) 1782 410.1 3.8e-114
XP_006716479 (OMIM: 608511) PREDICTED: phytanoyl-C ( 330) 1782 410.1 3.8e-114
NP_055574 (OMIM: 608511) phytanoyl-CoA hydroxylase ( 330) 1782 410.1 3.8e-114
XP_016869591 (OMIM: 608511) PREDICTED: phytanoyl-C ( 197) 1070 249.7 4.2e-66


>>NP_001092805 (OMIM: 608511) phytanoyl-CoA hydroxylase-  (330 aa)
 initn: 1782 init1: 1782 opt: 1782  Z-score: 2170.3  bits: 410.1 E(85289): 3.8e-114
Smith-Waterman score: 1782; 76.4% identity (92.1% similar) in 330 aa overlap (47-376:1-330)

         20        30        40        50        60        70      
pF1KA1 CEEVIKNLSLEAIQLCDRDGNKSQDSGIAEMEELPVPHNIKISNITCDSFKISWEMDSKS
                                     :: : .::.:.:.:::::::.::: :....
NP_001                               MELLSTPHSIEINNITCDSFRISWAMEDSD
                                             10        20        30

         80        90       100       110       120       130      
pF1KA1 KDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTVRGHWFLSPRTEYTVAVQT
        .:.::::::::::::::::::::.:::::::::::::::::::::::::::::.:::::
NP_001 LERVTHYFIDLNKKENKNSNKFKHRDVPTKLVAKAVPLPMTVRGHWFLSPRTEYSVAVQT
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KA1 ASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKAEVIAGRMLKFSVFYRNQHKEYFD
       : :: ::.:.:: ::: .::::.::.: ::.:: :::: ::::::.:::::::.:::::.
NP_001 AVKQSDGEYLVSGWSETVEFCTGDYAKEHLAQLQEKAEQIAGRMLRFSVFYRNHHKEYFQ
              100       110       120       130       140       150

        200       210       220       230       240       250      
pF1KA1 YVREHHGNAMQPSVKDNSGSHGSPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAA
       ..: : :: .:: .:::::::::: :: :.:.::::.::::::.:::::::::.::.: :
NP_001 HARTHCGNMLQPYLKDNSGSHGSPTSGMLHGVFFSCNTEFNTGQPPQDSPYGRWRFQIPA
              160       170       180       190       200       210

        260       270       280       290       300       310      
pF1KA1 EKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEE
       ..::::.:::::.:::::::::::.:::.:: :: ::.::..::: :.   ::::::. :
NP_001 QRLFNPSTNLYFADFYCMYTAYHYAILVLAPKGSLGDRFCRDRLPLLDIACNKFLTCSVE
              220       230       240       250       260       270

        320       330       340       350       360       370      
pF1KA1 DGVLVYHHAQDVILEVIYTDPVDLSLGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR
       :: ::..::::.:::.:::.::::::::..::.::::::::::.::::::::::::::::
NP_001 DGELVFRHAQDLILEIIYTEPVDLSLGTLGEISGHQLMSLSTADAKKDPSCKTCNISVGR
              280       290       300       310       320       330

>>XP_006716479 (OMIM: 608511) PREDICTED: phytanoyl-CoA h  (330 aa)
 initn: 1782 init1: 1782 opt: 1782  Z-score: 2170.3  bits: 410.1 E(85289): 3.8e-114
Smith-Waterman score: 1782; 76.4% identity (92.1% similar) in 330 aa overlap (47-376:1-330)

         20        30        40        50        60        70      
pF1KA1 CEEVIKNLSLEAIQLCDRDGNKSQDSGIAEMEELPVPHNIKISNITCDSFKISWEMDSKS
                                     :: : .::.:.:.:::::::.::: :....
XP_006                               MELLSTPHSIEINNITCDSFRISWAMEDSD
                                             10        20        30

         80        90       100       110       120       130      
pF1KA1 KDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTVRGHWFLSPRTEYTVAVQT
        .:.::::::::::::::::::::.:::::::::::::::::::::::::::::.:::::
XP_006 LERVTHYFIDLNKKENKNSNKFKHRDVPTKLVAKAVPLPMTVRGHWFLSPRTEYSVAVQT
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KA1 ASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKAEVIAGRMLKFSVFYRNQHKEYFD
       : :: ::.:.:: ::: .::::.::.: ::.:: :::: ::::::.:::::::.:::::.
XP_006 AVKQSDGEYLVSGWSETVEFCTGDYAKEHLAQLQEKAEQIAGRMLRFSVFYRNHHKEYFQ
              100       110       120       130       140       150

        200       210       220       230       240       250      
pF1KA1 YVREHHGNAMQPSVKDNSGSHGSPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAA
       ..: : :: .:: .:::::::::: :: :.:.::::.::::::.:::::::::.::.: :
XP_006 HARTHCGNMLQPYLKDNSGSHGSPTSGMLHGVFFSCNTEFNTGQPPQDSPYGRWRFQIPA
              160       170       180       190       200       210

        260       270       280       290       300       310      
pF1KA1 EKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEE
       ..::::.:::::.:::::::::::.:::.:: :: ::.::..::: :.   ::::::. :
XP_006 QRLFNPSTNLYFADFYCMYTAYHYAILVLAPKGSLGDRFCRDRLPLLDIACNKFLTCSVE
              220       230       240       250       260       270

        320       330       340       350       360       370      
pF1KA1 DGVLVYHHAQDVILEVIYTDPVDLSLGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR
       :: ::..::::.:::.:::.::::::::..::.::::::::::.::::::::::::::::
XP_006 DGELVFRHAQDLILEIIYTEPVDLSLGTLGEISGHQLMSLSTADAKKDPSCKTCNISVGR
              280       290       300       310       320       330

>>NP_055574 (OMIM: 608511) phytanoyl-CoA hydroxylase-int  (330 aa)
 initn: 1782 init1: 1782 opt: 1782  Z-score: 2170.3  bits: 410.1 E(85289): 3.8e-114
Smith-Waterman score: 1782; 76.4% identity (92.1% similar) in 330 aa overlap (47-376:1-330)

         20        30        40        50        60        70      
pF1KA1 CEEVIKNLSLEAIQLCDRDGNKSQDSGIAEMEELPVPHNIKISNITCDSFKISWEMDSKS
                                     :: : .::.:.:.:::::::.::: :....
NP_055                               MELLSTPHSIEINNITCDSFRISWAMEDSD
                                             10        20        30

         80        90       100       110       120       130      
pF1KA1 KDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTVRGHWFLSPRTEYTVAVQT
        .:.::::::::::::::::::::.:::::::::::::::::::::::::::::.:::::
NP_055 LERVTHYFIDLNKKENKNSNKFKHRDVPTKLVAKAVPLPMTVRGHWFLSPRTEYSVAVQT
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KA1 ASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKAEVIAGRMLKFSVFYRNQHKEYFD
       : :: ::.:.:: ::: .::::.::.: ::.:: :::: ::::::.:::::::.:::::.
NP_055 AVKQSDGEYLVSGWSETVEFCTGDYAKEHLAQLQEKAEQIAGRMLRFSVFYRNHHKEYFQ
              100       110       120       130       140       150

        200       210       220       230       240       250      
pF1KA1 YVREHHGNAMQPSVKDNSGSHGSPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAA
       ..: : :: .:: .:::::::::: :: :.:.::::.::::::.:::::::::.::.: :
NP_055 HARTHCGNMLQPYLKDNSGSHGSPTSGMLHGVFFSCNTEFNTGQPPQDSPYGRWRFQIPA
              160       170       180       190       200       210

        260       270       280       290       300       310      
pF1KA1 EKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEE
       ..::::.:::::.:::::::::::.:::.:: :: ::.::..::: :.   ::::::. :
NP_055 QRLFNPSTNLYFADFYCMYTAYHYAILVLAPKGSLGDRFCRDRLPLLDIACNKFLTCSVE
              220       230       240       250       260       270

        320       330       340       350       360       370      
pF1KA1 DGVLVYHHAQDVILEVIYTDPVDLSLGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR
       :: ::..::::.:::.:::.::::::::..::.::::::::::.::::::::::::::::
NP_055 DGELVFRHAQDLILEIIYTEPVDLSLGTLGEISGHQLMSLSTADAKKDPSCKTCNISVGR
              280       290       300       310       320       330

>>XP_016869591 (OMIM: 608511) PREDICTED: phytanoyl-CoA h  (197 aa)
 initn: 1070 init1: 1070 opt: 1070  Z-score: 1307.8  bits: 249.7 E(85289): 4.2e-66
Smith-Waterman score: 1070; 75.6% identity (92.4% similar) in 197 aa overlap (180-376:1-197)

     150       160       170       180       190       200         
pF1KA1 WSEIIEFCTADYSKVHLTQLLEKAEVIAGRMLKFSVFYRNQHKEYFDYVREHHGNAMQPS
                                     ::.:::::::.:::::...: : :: .:: 
XP_016                               MLRFSVFYRNHHKEYFQHARTHCGNMLQPY
                                             10        20        30

     210       220       230       240       250       260         
pF1KA1 VKDNSGSHGSPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAAEKLFNPNTNLYFG
       .:::::::::: :: :.:.::::.::::::.:::::::::.::.: :..::::.:::::.
XP_016 LKDNSGSHGSPTSGMLHGVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPSTNLYFA
               40        50        60        70        80        90

     270       280       290       300       310       320         
pF1KA1 DFYCMYTAYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEEDGVLVYHHAQDVI
       :::::::::::.:::.:: :: ::.::..::: :.   ::::::. ::: ::..::::.:
XP_016 DFYCMYTAYHYAILVLAPKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELVFRHAQDLI
              100       110       120       130       140       150

     330       340       350       360       370      
pF1KA1 LEVIYTDPVDLSLGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR
       ::.:::.::::::::..::.::::::::::.::::::::::::::::
XP_016 LEIIYTEPVDLSLGTLGEISGHQLMSLSTADAKKDPSCKTCNISVGR
              160       170       180       190       




376 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:03:09 2016 done: Wed Nov  2 22:03:10 2016
 Total Scan time:  7.020 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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