GENSCAN 1.0	Date run:  2-Nov-116	Time: 21:51:45

Sequence gi568815596r:25642032_25978222 : 336191 bp : 43.09% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.09 PlyA -   2155   2150    6                               1.05
 1.08 Term -   9840   9818   23  1  2   86   38    30 0.362  -3.73
 1.07 Intr -  10630  10563   68  0  2  107   66   101 0.444   8.35
 1.06 Intr -  30582  30479  104  0  2   91   59    50 0.021   1.37
 1.05 Intr -  31833  31708  126  0  0   37   68   101 0.377   3.88
 1.04 Intr -  48509  48445   65  0  2  110   82    52 0.096   5.24
 1.03 Intr -  58317  58289   29  2  2   76   86     3 0.148  -3.34
 1.02 Intr -  59997  59885  113  0  2   73   61    96 0.335   4.58
 1.01 Init -  64240  64163   78  1  0   68   84    13 0.350  -0.03
 1.00 Prom -  65840  65801   40                              -4.16

 2.00 Prom +  67626  67665   40                              -3.36
 2.01 Init +  75335  75398   64  1  1   99   94    53 0.879   6.31
 2.02 Term +  76902  76978   77  1  2   83   41    54 0.465  -1.80
 2.03 PlyA +  77770  77775    6                               1.05

 3.10 PlyA -  78636  78631    6                               1.05
 3.09 Term - 102400  99998 2403  1  0   98   39   886 0.365  70.08
 3.08 Intr - 108382 107665  718  0  1   79  116   358 0.930  29.14
 3.07 Intr - 111608 111503  106  0  1   66   75   105 0.988   6.27
 3.06 Intr - 114083 113987   97  2  1   69  115    18 0.908   2.18
 3.05 Intr - 117614 117451  164  0  2  103   96   105 0.958  12.49
 3.04 Intr - 126837 126711  127  0  1   86   70   146 0.999  12.85
 3.03 Intr - 129509 129409  101  0  2   92  115    29 0.941   5.83
 3.02 Intr - 157504 157354  151  1  1   76   94   129 0.783  12.04
 3.01 Init - 168625 168350  276  1  0  116    2   243 0.066  15.49
 3.00 Prom - 169713 169674   40                              -5.86

 4.05 PlyA - 169727 169722    6                               1.05
 4.04 Term - 172552 172502   51  1  0   89   43    70 0.045   0.03
 4.03 Intr - 174483 174348  136  2  1   57   37    44 0.000  -3.23
 4.02 Intr - 203532 203450   83  0  2   92  109    48 0.600   5.74
 4.01 Init - 214908 214672  237  0  0   58   85   357 0.832  30.41
 4.00 Prom - 233111 233072   40                              -2.96

 5.00 Prom + 243035 243074   40                              -4.86
 5.01 Init + 244165 244333  169  0  1   92  107   134 0.623  15.40
 5.02 Term + 247102 247145   44  2  2  133   36    28 0.597  -0.58
 5.03 PlyA + 247175 247180    6                               1.05

 6.13 PlyA - 247276 247271    6                               1.05
 6.12 Term - 269592 269489  104  1  2   75   37   158 0.315   7.84
 6.11 Intr - 273581 273445  137  1  2   67   15    48 0.222  -4.39
 6.10 Intr - 273898 273646  253  2  1   47   97   138 0.317   7.09
 6.09 Intr - 275969 275861  109  2  1   51   76    64 0.132   1.36
 6.08 Intr - 288032 287924  109  1  1   43   90   146 0.020  10.59
 6.07 Intr - 309874 309758  117  0  0   99   67   231 0.111  21.68
 6.06 Intr - 312354 312236  119  0  2   54   30   273 0.998  17.36
 6.05 Intr - 313632 313510  123  0  0   69  100   249 0.999  24.98
 6.04 Intr - 314413 314312  102  1  0  105   91   168 0.987  19.17
 6.03 Intr - 315646 315594   53  2  2   77   96    40 0.888   2.33
 6.02 Intr - 317790 317763   28  0  1   90   79    35 0.193   0.49
 6.01 Init - 331770 331684   87  0  0   92   42   151 0.448   9.54
 6.00 Prom - 332533 332494   40                              -3.26


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl - 168625 168290  336  1  0  116   41   287 0.902  22.83
S.002 Term - 309874 309754  121  0  1   99   47   247 0.886  19.65


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:25642032_25978222|GENSCAN_predicted_peptide_1|201_aa
MTLKEHAAFKHLFNKAHLALPLIHLTLGPTAGSETSMIPSARMWDTALPQKPSLFCRATG
EPTSEPVSPLEGKGQLEGPLLASPGPREVAAINDKSRRAGHPADGYLRMERHPARRQRAG
EAWMEPASRLPGTRRRPYWEIGAINCVVLGIKQKGQKKPMGEIWESFEGSYGMIEESGNK
RKTMAEKRQLFIEMLKSYKDP

>gi568815596r:25642032_25978222|GENSCAN_predicted_CDS_1|606_bp
atgactcttaaggagcatgctgccttcaagcatctgtttaacaaagcacatcttgcactg
cccttaatccatttaaccctgggcccaactgccggctcagagacctccatgataccatct
gctcgaatgtgggacacagccttgccacagaagccgtcattattctgccgggccactggg
gagcccaccagtgagcctgtttcaccactagaaggcaaaggtcagctggaaggtcctctg
ctggcatcaccagggcccagagaagtggctgcaattaacgataagtcacgtcgggccggg
caccccgccgacggatacctgcggatggaaagacacccggcccgacgccagcgagcggga
gaagcctggatggagccagcttcccgcctgcccggaacccgccggcgaccgtattgggaa
attggagccataaattgcgtggttttggggataaagcagaaaggtcaaaagaagcctatg
ggagaaatttgggagagttttgaaggctcctacgggatgattgaggaaagtgggaacaag
cggaagaccatggcagagaagaggcagctgttcatagaaatgctgaaatcttacaaggac
ccttaa

>gi568815596r:25642032_25978222|GENSCAN_predicted_peptide_2|46_aa
MAGGRAQWLMPVIPALWEAEAELRTEFDMKVMSTQICILAGQCITS

>gi568815596r:25642032_25978222|GENSCAN_predicted_CDS_2|141_bp
atggccggtggccgggcgcagtggctcatgcctgtaatcccagcgctttgggaggctgag
gcagaattaagaacagaatttgacatgaaggttatgagtacacagatttgcatcttggca
ggccagtgtatcacctcttaa

>gi568815596r:25642032_25978222|GENSCAN_predicted_peptide_3|1380_aa
MAGITTIEAVKHNIQVLQQQADDAEERAEHLQREAEGERRAWEQAEAEVASLNHRIQLVE
EELDCAQEHVATALQKPEEAEKATDQSERDMKKDVPDGVKELSEGSEESSDGQSDSQSSE
NSSSSSDGGSNKEGKKSRWKRKVSSSSPQSGCPSPTIPAGKVISPSQKHSKKALKQALKQ
QQQKKQQQQCRPSISISSNQHLSLKTVKAASDSVPAKPGQMKRTKCADIDVETPDSILVN
TNLRALINKHTFSVLPGDCQQRLLLLLPEVDRQVGPDGLMKLNGSALNNEFFTSAAQGWK
ERLSEGEFTPEMQVRIRQEIEKEKKVEPWKEQFFESYYGQSSGLSLEDSKKLTASPSDPK
VKKTPAEQPKSMPVSEASLIRIVPVVSQSECKEEALQMSSPGRKEECESQGEVQPNFSTS
SEPLLSSALNTHELSSILPIKCPKDEDLLEQKPVTSAEQESEKNHLTTASNYNKSESQES
LVTSPSKPKSPGVEKPIVKPTAGAGPQETNMKEPLATLVDQSPESLKRKSSLTQEEAPVS
WEKRPRVTENRQHQQPFQVSPQPFLNRGDRIQVRKVPPLKVSPRARFPVSITSPNRTGAR
TLADIKAKAQLVKAQRAAAAAAAAAAAAASVGGTIPGPGPGGGQGPGEGGEGQTARGGSP
GSDRVSETGKGPTLELAGTGSRGGTRELLPCGPETQPQSETKTTPSQAQPHSVSGAQLQQ
TPPVPPTPAVSGACTSVPSPAHIEKLDNEKLNPTRATATVASVSHPQGPSSCRQEKAPSP
TGPALISGASPVHCAADGTVELKAGPSKNIPNPSASSKTDASVPVAVTPSPLTSLLTTAT
LEKLPVPQVSATTAPAGSAPPSSTLPAASSLKTPGTSLNMNGPTLRPTSSIPANNPLVTQ
LLQGKDVPMEQILPKPLTKVEMKTVPLTAKEERGMGALIATNTTENSTREEVNERQSHPA
TQQQLGKTLQSKQLPQVPRPLQLFSAKELRDSSIDTHQYHEGLSKATQDQILQTLIQRVR
RQNLLSVVPPSQFNFAHSGFQLEDISTSQRFMLGFAGRRTSKPAMAGHYLLNISTYGRGS
ESFRRTHSVNPEDRFCLSSPTEALKMGYTDCKNATGESSSSKEDDTDEESTGDEQESVTV
KEEPQVSQSAGKGDTSSGPHSRETLSTSDCLASKNVKAEIPLNEQTTLSKENYLFTRGQT
FDEKTLARDLIQAAQKQMAHAVRGKAIRSSPELFSSTVLPLPADSPTHQPLLLPPLQTPK
LYGSPTQIGPSYRGMINVSTSSDMDHNSAVPGSQVSSNVGDVMSFSVTVTTIPASQAMNP
SSHGQTIPVQAFSEENSIEGTPSKCYCRLKAMIMCKGCGAFCHDDCIGPSKLCVSCLVVR

>gi568815596r:25642032_25978222|GENSCAN_predicted_CDS_3|4143_bp
atggctgggatcaccactattgaggcagtgaagcacaatatccaggttctgcagcagcag
gcagatgatgcagaggagagagctgagcacctccagcgagaagctgaaggagaaaggcgc
gcctgggaacaggctgaggctgaggtggcctccttgaaccataggatccagctggttgaa
gaggagctggactgtgctcaggagcacgtggccactgccctgcaaaagccggaagaagcg
gaaaaagctactgatcagagtgagagagatatgaagaaagatgtgccggatggggtgaaa
gagctgtcagaaggttcagaagaaagcagtgatggtcagtcagattcccagagttctgag
aacagcagcagcagcagtgatggtggcagcaacaaggagggaaaaaagagcaggtggaaa
aggaaagtatcgtcgtcctccccgcagtcaggctgcccatcacccaccattccagcaggt
aaagtcatttctccatcacagaagcacagcaagaaggcactaaagcaggcgctaaagcag
caacagcagaagaagcagcagcagcaatgcaggccaagcatatccatctcctccaaccag
catctctcactaaagactgtcaaagcagccagtgactctgtacctgccaaacctggacaa
atgaaaagaactaaatgtgctgacattgacgttgagacaccggactccattctggttaat
acaaatctgcgagcactgatcaacaagcacacattttcagtccttcctggagattgccag
caacgactgcttttactactcccagaggtagatcgacaggttggtccagatggtttaatg
aagttaaatggctcagcccttaacaatgaattcttcacttcagcagcccaaggctggaag
gaaagactctcagaaggtgagtttacacctgagatgcaggtgagaattcgacaagagatt
gagaaggagaaaaaagtggagccatggaaagaacaattctttgaaagctactatgggcag
agttctggcctgagccttgaagattctaagaaattgacagcttctcccagtgatcccaaa
gtaaagaaaaccccagctgaacaaccaaaatccatgcctgtgtcagaggcctctcttatc
agaatagttccagtagtctcccagtcagagtgtaaagaagaagcattgcaaatgtcatca
ccaggcagaaaagaagagtgtgaaagccaaggtgaagtgcagccgaacttctccacatct
tcagagcccctgctttcctcagctctcaatacacatgagcttagcagcattcttcccatc
aagtgcccaaaggatgaggatctcttggagcagaagccagtcacctctgctgaacaggaa
tctgagaagaaccatctcaccacagcttctaattataacaaaagtgaaagccaagaatct
ttagttacatcgccaagcaaacccaagagtcctggggttgaaaaaccaatagtgaagccc
acagcaggagcgggtccacaggagactaatatgaaagaacctctagcaactcttgttgat
cagagcccagaaagcctcaagaggaagtcttccctcacccaagaagaggcccctgtgagc
tgggagaagaggccacgtgtcactgagaatcgccagcaccagcagccatttcaggtctca
ccacagccctttctcaatagaggggacagaatccaggtgcgaaaagtaccacctctcaag
gtctctcccagggctcgttttccagtctccatcactagtcctaacagaacaggagccaga
actcttgcagacatcaaagcaaaagcccaactggtcaaagcacagagggcagcagctgcc
gctgccgccgcagctgctgcagccgcctcagttggagggaccattccaggacctggccca
gggggtggacaaggtccaggagagggtggtgaagggcagactgctagaggaggcagtcca
ggctcagacagagtcagtgaaactggaaagggccccacactggaactggcaggaactgga
agcaggggaggtacgagagagcttttaccctgtggtccagagactcagccccagtctgag
accaagaccaccccaagccaggcacagcctcatagtgtctctggagcacaactacagcaa
acccccccagtgcctccaacacctgccgtcagtggagcatgcacaagtgtcccatcacca
gcccacatagagaaattggataatgaaaaactgaaccccaccagagcaacagccacagtg
gcctctgtcagccatccacaagggcccagtagttgcagacaggagaaagcaccttctcca
acaggtcctgctctaatctcaggtgcctcacctgttcattgtgcagctgatggcacagtt
gagctcaaagcaggtcctagtaagaatatacctaacccttcagcctcatcaaagacagat
gctagtgtgccagtggctgtaactccctcccctttaacatctttattgaccacagccact
ttagaaaagcttcctgtaccccaggtcagtgcaactacagcacctgctggatcagctcca
ccctcgagcactttgccagcagcttctagccttaaaaccccaggaacttctttaaacatg
aatggacccactttaagaccaacctctagtatccctgctaataatcctttagtgactcag
ctgcttcaaggcaaagatgttcccatggagcaaattctgcctaaacctctcaccaaagtt
gaaatgaaaacggttccactgactgcaaaagaggaaagggggatgggagcgctcatagct
accaacacaacagaaaatagcaccagagaggaagttaatgagagacagtcccatccagct
acgcagcagcagctgggcaaaaccttgcaaagtaagcagctcccccaggttccaaggccc
cttcagctcttttcagctaaggagctgagggactccagcattgacacacaccaataccac
gaaggactaagtaaagcaacccaagatcagatccttcagactctcattcagagggttcgg
aggcagaatcttctctcagttgtgccgccctcacagttcaacttcgctcactcaggtttc
cagctggaagacatctccacaagccagaggttcatgctgggttttgctggcagaaggaca
tccaaacctgcaatggcagggcactacttactgaatatttctacctacggccggggctca
gagagctttaggaggacccattctgtaaaccctgaagatcgtttttgtctaagcagcccc
actgaagccttgaaaatgggatatacagactgtaaaaatgcaacaggagagagtagcagc
agcaaagaagatgacactgatgaggaaagtactggtgatgagcaggaatctgtcacagtg
aaagaggagccccaggtttcccagagtgctggcaagggtgacacaagttcaggacctcac
agcagggaaactctatctaccagtgattgcttagctagcaagaatgtgaaggctgagata
ccattgaatgagcaaaccactttaagtaaggagaattacctgttcactagaggccaaaca
tttgatgaaaagaccctagccagagatttaattcaggcagcacagaagcagatggctcat
gcagtgagaggtaaggcaatccgtagcagccccgagcttttcagttctactgttcttcct
ctgcctgcagacagccccacccaccagcccctactccttccacccctgcaaaccccgaag
ttgtatggaagccccacccagatagggccaagctatagaggcatgatcaatgtctccacc
tcatctgacatggaccataactctgctgtaccaggtagccaggtatctagcaatgtaggt
gatgtcatgtcattttcagtgactgtcactaccatccctgctagccaagctatgaatccc
agcagccatggccagaccattcctgttcaggcgttctccgaagagaacagcatagagggc
acgccttcgaaatgttactgccgcttgaaagccatgatcatgtgcaaaggctgtggcgct
ttctgccatgatgattgcatcggcccctccaaactgtgcgtctcctgccttgtcgttcgg
taa

>gi568815596r:25642032_25978222|GENSCAN_predicted_peptide_4|168_aa
MRYRTLSQLPPRLVSIEDPFDQNDWATWTSFLSGVDIQIVGDDLTVTNPKRIAQSFEKKV
CSCLLLKVNQIGSVTESIQVLEKYPNTPMSHKEILQVIQREGLKEIRSQPNRQILASASV
MSLISLIKSSLVAKTNIIVAGKYISLTVTYCKNPYLFNPNLLSMDKKN

>gi568815596r:25642032_25978222|GENSCAN_predicted_CDS_4|507_bp
atgaggtataggacactgtcccagctgccacctagactcgtctccatcgaggaccccttt
gaccagaatgactgggccacttggacctcgttcctctcaggggtggacatccagattgtg
ggggatgacctgacagtcaccaaccccaagaggattgcccagtcctttgagaagaaggtc
tgcagctgtctgctgctgaaggtcaaccagatcggctcggtgactgaatcgatccaggtc
ttagaaaaataccccaatacacccatgagtcataaagaaattcttcaagttatccagaga
gaaggactaaaagaaatcaggagtcagccaaacaggcaaattttagcctctgcttccgtc
atgtctcttatttcattgatcaaatcaagccttgtggccaagacgaacatcattgtggca
gggaaatatatttcacttactgtaacgtactgcaagaacccctacctcttcaaccccaat
ctcttgagcatggacaagaaaaattag

>gi568815596r:25642032_25978222|GENSCAN_predicted_peptide_5|70_aa
MVAGMEATNGPNTVGSHSPLNFYLLLLLNVQSASKKDENQPPDLTPSLKYTNQPLGGVDP
EGTSNELPTC

>gi568815596r:25642032_25978222|GENSCAN_predicted_CDS_5|213_bp
atggtggcaggaatggaggctacaaatggacccaacaccgtgggttcccactcaccactg
aacttttacctactactgctactgaatgtccaatctgccagcaagaaagatgaaaaccaa
ccccctgatttgacaccatccctcaagtacaccaatcagccacttggaggtgttgatcct
gaaggcacctctaatgaacttcccacatgctag

>gi568815596r:25642032_25978222|GENSCAN_predicted_peptide_6|446_aa
MGLPILLLIALFLCPGLLLVTREYELWKQVPQMIGPHDSGLLLPKSDSTPCFEIPQAMES
KLLIGGRNIMDHTNEQQKMLELKRQEIAEQKRREREMQQEMMLRDEETMELRGTYTSLQQ
EVEVKTKKLKKLYAKLQAVKAEIQDQHDEYIRVRQDLEEAQNEQTRELKLKYLIIENFIP
PEEKNKIMNRLFLDCEEEQWKFQPLVPAGVSSSQMKKRPTSAVGYKRPISQYARVAMAMG
SHPRYRPQLYALALFLFTVHALYSLGSGLFAKSKRLSQEQSQDPGAQLASPSGSPTGAAG
GAACQSRAVCLHSSALGWSMGLGAVEQEAALIGEARAAQEPTEWRGGSGMVGCRSRALPG
GKAAKARASRPAALSAGSAGATPTRNSRWPASTAYSPGSRPRLSLHTSPQAEVYVYRYRY
LYLYLSHAEPKLDCTAAISAHCNLPA

>gi568815596r:25642032_25978222|GENSCAN_predicted_CDS_6|1341_bp
atgggcctccctatcctactgctgattgcactgtttttgtgtcctggattgttgctggta
accagggagtacgaattatggaagcaggttccccagatgatcgggccccatgacagtggt
ctcctgctccccaagtctgacagcaccccctgctttgagatccctcaggccatggagagc
aagctcctcatcgggggcaggaacatcatggatcacaccaacgaacagcagaagatgttg
gaactgaagaggcaggagattgccgagcagaaacgtcgtgagcgggagatgcagcaggag
atgatgctccgggacgaggagactatggagctccggggcacctacacatccctgcagcag
gaggtggaggtcaaaaccaagaaactcaagaagctctacgccaagctgcaggcggtgaag
gcggagatccaggaccagcatgatgagtatatccgcgtgcggcaggacctggaggaggcg
cagaacgagcagacccgcgaactcaagctcaagtacctaatcatcgagaacttcatcccg
ccggaggagaagaacaagatcatgaaccggcttttcctggactgtgaggaggagcagtgg
aagttccagccactggtgccagccggcgtcagtagcagccagatgaagaagcggccaaca
tctgcagtgggctacaagaggcctatcagccagtatgctcgggttgccatggcaatgggg
tcccaccccaggtacaggccacagctgtatgcactggccctgttcctgttcacagtgcat
gctctgtattccttaggctctggtctctttgcaaagtccaagcgtctcagccaggagcag
agccaagacccaggagcccagctggcttcacccagtggatcccccacgggggctgcaggt
ggagctgcctgccagtcccgcgccgtgtgcctgcactcctcagcccttggatggtcgatg
ggactgggcgccgtggagcaggaggcggcgctcatcggggaggctcgggccgcacaggag
cccacggagtggcggggaggctcaggcatggtgggctgcaggtcccgagccctgcccggc
gggaaggcagctaaggcccgggccagccggccggctgctctgagtgcagggtccgccggg
gccacgcccacccggaactcgcgctggcccgcaagcaccgcgtacagccccggttcccgc
ccgcgcctctccctccacacctccccgcaagctgaggtctacgtctaccgctaccgctac
ctctacctctacctctcccatgccgagccgaagctggactgtactgctgccatctcggct
cactgcaacctccctgcctga