FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1622, 873 aa
  1>>>pF1KA1622 873 - 873 aa - 873 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0966+/-0.00107; mu= 12.7387+/- 0.065
 mean_var=120.0191+/-24.395, 0's: 0 Z-trim(106.6): 23  B-trim: 4 in 1/50
 Lambda= 0.117071
 statistics sampled from 9060 (9069) to 9060 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.279), width:  16
 Scan time:  3.330

The best scores are:                                      opt bits E(32554)
CCDS9921.1 PPP4R4 gene_id:57718|Hs108|chr14        ( 873) 5672 969.9       0
CCDS9922.1 PPP4R4 gene_id:57718|Hs108|chr14        ( 120)  635 118.7 6.3e-27


>>CCDS9921.1 PPP4R4 gene_id:57718|Hs108|chr14             (873 aa)
 initn: 5672 init1: 5672 opt: 5672  Z-score: 5181.9  bits: 969.9 E(32554):    0
Smith-Waterman score: 5672; 100.0% identity (100.0% similar) in 873 aa overlap (1-873:1-873)

               10        20        30        40        50        60
pF1KA1 MHPPPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MHPPPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 YLLSAGQDVQGTSVIANLPFLMRQNPTETLRRVLPKVREALHVAGVEMQLTAAMSFLTIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 YLLSAGQDVQGTSVIANLPFLMRQNPTETLRRVLPKVREALHVAGVEMQLTAAMSFLTIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 QDESVSIHAYTHSFLQVILLHLEHRDTGVSNAWLETLLSVIEVLPKETLRHEILNPLVSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 QDESVSIHAYTHSFLQVILLHLEHRDTGVSNAWLETLLSVIEVLPKETLRHEILNPLVSK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 AQLSQTVQSRLVSCKILGKLTNKFDAHTIKREILPLVKSLCQDVEYEVRSCMCRQLENIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 AQLSQTVQSRLVSCKILGKLTNKFDAHTIKREILPLVKSLCQDVEYEVRSCMCRQLENIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 QGIGTELTKSVVLPELIELSRDEGSSVRLAAFETLVNLLDIFDTDDRSQTILPLVKSFCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 QGIGTELTKSVVLPELIELSRDEGSSVRLAAFETLVNLLDIFDTDDRSQTILPLVKSFCE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 KSFKADESILISLSFHLGKLCHGLYGIFTPDQHLRFLEFYKKLCTLGLQQENGHNENQIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 KSFKADESILISLSFHLGKLCHGLYGIFTPDQHLRFLEFYKKLCTLGLQQENGHNENQIP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 PQILEQEKKYISVRKNCAYNFPAMIVFVDPKNFHMELYSTFFCLCHDPEVPVRYTIAICF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 PQILEQEKKYISVRKNCAYNFPAMIVFVDPKNFHMELYSTFFCLCHDPEVPVRYTIAICF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 YEVSKLLNSGVYLIHKELITLLQDESLEVLDALIDHLPEILELMSTGGESSVQENKLSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 YEVSKLLNSGVYLIHKELITLLQDESLEVLDALIDHLPEILELMSTGGESSVQENKLSSL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 PDLIPALTAAEQRAAASLKWRTHEKLLQKYACLPHVISSDQIYYRFLQRMFTIMMTNNVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 PDLIPALTAAEQRAAASLKWRTHEKLLQKYACLPHVISSDQIYYRFLQRMFTIMMTNNVL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 PVQKAASRTLCIFLRYNRKQEQRHEVIQKLIEQLGQGKSYWNRLRFLDTCEFIIEIFSKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 PVQKAASRTLCIFLRYNRKQEQRHEVIQKLIEQLGQGKSYWNRLRFLDTCEFIIEIFSKS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 FFCKYFFLPAIELTHDPVANVRMKLCYLLPKVKSTLKIPADKHLLQQLEMCVRKLLCQEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 FFCKYFFLPAIELTHDPVANVRMKLCYLLPKVKSTLKIPADKHLLQQLEMCVRKLLCQEK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 DKDVLAIVKRTVLELDRMEMSMDAFQKKFYEKDLLDQEKEREELLLLEMEQLEKEKQQND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 DKDVLAIVKRTVLELDRMEMSMDAFQKKFYEKDLLDQEKEREELLLLEMEQLEKEKQQND
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 GRPMSDKMFEKKRRDTKTPTQSLPKNIPISVPGPSSVTPSTSKEIKKSKLIRSQSFNNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 GRPMSDKMFEKKRRDTKTPTQSLPKNIPISVPGPSSVTPSTSKEIKKSKLIRSQSFNNQA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 FHAKYGNLEKCASKSSTTGYTTSVSGLGKTSVLSLADDSFRTRNASSVPSSFSPNTPLPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 FHAKYGNLEKCASKSSTTGYTTSVSGLGKTSVLSLADDSFRTRNASSVPSSFSPNTPLPS
              790       800       810       820       830       840

              850       860       870   
pF1KA1 TSRGTGNSVDPKSSGSKDTQPRKATLKSRKSNP
       :::::::::::::::::::::::::::::::::
CCDS99 TSRGTGNSVDPKSSGSKDTQPRKATLKSRKSNP
              850       860       870   

>>CCDS9922.1 PPP4R4 gene_id:57718|Hs108|chr14             (120 aa)
 initn: 635 init1: 635 opt: 635  Z-score: 597.0  bits: 118.7 E(32554): 6.3e-27
Smith-Waterman score: 635; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KA1 MHPPPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MHPPPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 YLLSAGQDVQGTSVIANLPFLMRQNPTETLRRVLPKVREALHVAGVEMQLTAAMSFLTIL
       ::::::::::::::::::::::::::::::::::::::                      
CCDS99 YLLSAGQDVQGTSVIANLPFLMRQNPTETLRRVLPKVRVHEDAHLFIQRVWISHMFVQRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 QDESVSIHAYTHSFLQVILLHLEHRDTGVSNAWLETLLSVIEVLPKETLRHEILNPLVSK




873 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:34:09 2016 done: Wed Nov  2 21:34:09 2016
 Total Scan time:  3.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]