GENSCAN 1.0	Date run:  2-Nov-116	Time: 21:10:54

Sequence gi568815578r:5447664_5704412 : 256749 bp : 44.29% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5152   5298  147  0  0   48   53   160 0.753   6.59
 1.02 Intr +   5485   5602  118  0  1   49   78    81 0.823   3.24
 1.03 Term +   5863   6026  164  2  2   -5   45   178 0.579   2.30
 1.04 PlyA +   6489   6494    6                               1.05

 2.00 Prom +   9804   9843   40                              -4.06
 2.01 Init +  18233  18290   58  1  1   48   48    80 0.209   1.47
 2.02 Intr +  21490  21624  135  2  0   47   87    45 0.148   0.84
 2.03 Intr +  22299  22480  182  1  2  -23   85   157 0.541   3.89
 2.04 Term +  26040  26276  237  2  0  108   47   170 0.662  11.07
 2.05 PlyA +  26509  26514    6                              -0.45

 3.00 Prom +  28359  28398   40                              -4.46
 3.01 Init +  28413  29028  616  2  1   71  113   100 0.367   6.30
 3.02 Intr +  29637  29742  106  1  1   52   93    25 0.097  -1.33
 3.03 Intr +  37386  37517  132  0  0   66   68   104 0.874   5.96
 3.04 Term +  38114  38234  121  2  1  115   49    76 0.853   4.35
 3.05 PlyA +  40946  40951    6                               1.05

 4.06 PlyA -  41878  41873    6                               1.05
 4.05 Term -  54131  53895  237  2  0  108   47   153 0.211   9.37
 4.04 Intr -  58449  58327  123  0  0   54   53    81 0.758   1.98
 4.03 Intr -  60665  60598   68  0  2   92   77    57 0.913   3.62
 4.02 Intr -  62880  62766  115  0  1  100   70    66 0.886   6.02
 4.01 Init -  68125  67484  642  1  0   86  -33   257 0.375   8.73
 4.00 Prom -  68908  68869   40                              -2.26

 5.00 Prom +  69287  69326   40                              -9.85
 5.01 Sngl +  69439  70725 1287  0  0   58   55   362 0.395  25.88
 5.02 PlyA +  71356  71361    6                               1.05

 6.00 Prom +  72725  72764   40                               0.54
 6.01 Sngl +  85424  85567  144  1  0   74   52   151 0.608   4.01
 6.02 PlyA +  85715  85720    6                               1.05

 7.23 PlyA -  85902  85897    6                               1.05
 7.22 Term - 100187  99998  190  1  1   84   29   171 0.934   7.72
 7.21 Intr - 110442 110282  161  0  2   96   36    31 0.711  -2.51
 7.20 Intr - 111156 111021  136  2  1   77  119    67 0.963   9.27
 7.19 Intr - 112413 112277  137  0  2  109   82    -9 0.899  -0.03
 7.18 Intr - 117415 117354   62  2  2   49  115     6 0.671  -2.15
 7.17 Intr - 119109 119070   40  0  1  109   95    35 0.812   4.10
 7.16 Intr - 119897 119820   78  2  0  113   62    55 0.963   5.15
 7.15 Intr - 122576 122484   93  2  0   68  102    28 0.618   2.36
 7.14 Intr - 126306 126252   55  2  1  108  103     2 0.866   2.68
 7.13 Intr - 127882 127750  133  2  1   37  100    59 0.887   1.70
 7.12 Intr - 128315 128153  163  2  1   78   94    45 0.964   3.65
 7.11 Intr - 130948 130717  232  0  1   68   81   161 0.784  11.18
 7.10 Intr - 145748 145683   66  1  0  111   42    52 0.073   0.92
 7.09 Intr - 151158 151062   97  1  1  114  113    45 0.859   8.67
 7.08 Intr - 154448 154322  127  2  1   78   57    86 0.834   4.75
 7.07 Intr - 163296 163179  118  2  1   68   78    27 0.125   0.17
 7.06 Intr - 163618 163498  121  2  1   14   58   158 0.069   4.95
 7.05 Intr - 187729 187616  114  2  0   81   97    -4 0.047   0.22
 7.04 Intr - 205789 205676  114  2  0   60   81    64 0.032   3.32
 7.03 Intr - 210141 210057   85  0  1   73   85     4 0.050  -2.01
 7.02 Intr - 222007 221941   67  0  1   96  101    32 0.138   4.21
 7.01 Init - 240716 240583  134  2  2   96    7   115 0.421   3.81

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 228313 228376   64  0  1  102   94    33 0.840   6.62
S.002 Term - 246766 246699   68  2  2   76   47    77 0.802   0.50


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:5447664_5704412|GENSCAN_predicted_peptide_1|142_aa
MPKPGRPVWEVRCASAWPPVVWDVRSAAARPPIVWEVRSAAARPPIVWEEVRSAAARPPR
LGSEERLCPAAHRLGSEERCCPATHRLGVRCASARLPVVWEVRSAAARPPIVWDVRSASA
RLPRLGSVPNSSEETATIKNGP

>gi568815578r:5447664_5704412|GENSCAN_predicted_CDS_1|429_bp
atgcctaagcccggccgccccgtctgggaagtgaggtgcgcctctgcctggccgcctgtc
gtctgggatgtgaggagcgccgctgcccggccacccatcgtctgggaagtgaggagcgct
gctgcccggccacccatcgtctgggaagaagtgaggagcgccgctgcccggccaccccgt
ctgggaagtgaggagcgcctctgcccggccgcccatcgtctgggaagtgaggagcgctgc
tgcccggccacccatcgtctgggagtgaggtgcgcctctgcccggctgcccgtcgtctgg
gaagtgaggagcgctgctgcccggccacccatcgtctgggatgtgaggagcgcctctgcc
cggctgccccgtctgggaagtgtacccaacagctccgaagagacagcgaccatcaagaac
gggccatga

>gi568815578r:5447664_5704412|GENSCAN_predicted_peptide_2|203_aa
MGPTVDDCYRVTLEEFRGRWSQELQTPRKCSHSAKSLQESTPGRLLKHMSTPGKKTSSIT
LNAEAPVAISTSDHQHQWPSAPVIISTSGHQHHGHQHQWVISTMAISTSGPHGRGSHMGL
LPGYLWLTLETKTKTPPPFSSTTQISTGKDKGLNPQLLKMDPGHMGWSDTPAQLSAGEEA
QKRFRGLKDILLPCPYEQAISAP

>gi568815578r:5447664_5704412|GENSCAN_predicted_CDS_2|612_bp
atgggacctactgtcgatgactgctacagagttactctagaagaattcagaggaagatgg
tctcaggagctccaaaccccaaggaagtgcagccattctgctaaatcactccaggaatca
acccctgggcgtcttctgaagcacatgtctacaccggggaagaaaacctcctccataaca
ctaaatgctgaagcaccagtggccatcagcaccagtgatcatcagcaccagtggccatca
gcaccagtgatcatcagcaccagtggccatcagcaccatggccatcagcaccagtgggtc
atcagtaccatggccatcagcaccagtggcccgcatgggaggggttctcacatggggctt
ctgcctggctacctgtggctaacactggagacgaagaccaagacaccaccgcctttctcc
agtaccactcaaatcagcacaggcaaggacaaaggcctcaatccacaactgctgaagatg
gaccctggccacatgggatggtcagacacgcctgcccagctatctgcaggcgaagaggct
cagaagaggtttaggggcctgaaggacatcttgcttccatgtccatatgagcaggctatt
tctgctccatga

>gi568815578r:5447664_5704412|GENSCAN_predicted_peptide_3|324_aa
MGEDFMTKTPKAMATKAKIDKWHLIKLKSFCTAKETTIRMNRQPTEWEKIFAIYPSDKGL
ISRICKELKQIYKKKSNNSINKWAKDMNRHFSKEDIYATKRHMKECSSSLAIREMQIKTT
MRYYLTPVRMAIIKKSGNNRCWKGYGEIGTLLHCWWDCKLVQPLWKTVWRFLKDLELEIP
FDPAIPLLGIYPKDYKSCCYKDTCTPYPGEAPWPSTNSQVKHKQPSPMAPSALKEEVALT
LHIQHIWAITLDGNIRLGPTVVITGVDQVAESSVTMETPASSANRDLDLPSPLSWILLSV
VQAFSGALEFPLTFSPASCICCSH

>gi568815578r:5447664_5704412|GENSCAN_predicted_CDS_3|975_bp
atgggcgaggacttcatgactaaaacaccaaaagcaatggcaacaaaagccaaaattgac
aaatggcatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagaatg
aacaggcaacctacagaatgggagaaaatttttgcaatctacccatctgacaaagggcta
atatccagaatctgcaaagaacttaaacaaatttacaagaaaaaatcaaacaactccatc
aataagtgggcaaaggatatgaacagacacttctcgaaagaagacatttatgcaaccaaa
agacacatgaaagaatgttcatcatcactggccatcagagaaatgcaaatcaaaaccacc
atgagatactatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacagg
tgctggaaaggatatggagaaataggaacacttttacactgttggtgggactgtaaacta
gttcaaccattgtggaagacagtgtggcgattcctcaaggatctagaactagaaatacca
tttgatccagcgatcccattactgggtatatacccaaaggattataaatcatgctgctat
aaagacacatgcacaccttaccctggtgaagctccctggccaagcacaaactcccaggtc
aagcacaaacagccttcaccaatggcaccatcagccctcaaagaggaggtggcactaaca
cttcacatccagcacatctgggctatcactcttgatggcaacattagattggggcccact
gtggtcataacaggggtggaccaggtggcagagtcttcagtcaccatggaaaccccggca
tccagtgctaacagggacctcgacctcccttctccactctcctggatcctgctcagtgtg
gtgcaggccttctctggggccctggagttcccactgaccttcagccccgccagttgcatc
tgctgttcccactga

>gi568815578r:5447664_5704412|GENSCAN_predicted_peptide_4|394_aa
MAILPKVIYRFNAIPIKLPVTFFTELGKTTLRFIWNQKRACIGKSVLSQKNKAGGITLPD
FKLYYKATVTKTAWYWYQNRDIDQWNRTESSEIMLHIYNHLIFDKPDKNKKWGKDSLFNK
WCWENWLAICRKLKLDPFLTSHTKINSRWIKDLNVRPKTIKTLEENLGNTIQAIGMGKDF
MTKTPKAMATKAKIDKWDLIKLKSFCTAKETTIRLLGRPPALFTASSSVLKQLALEGILI
LDSRALLGFLYEARHSHSNSPNHDAQNATSKKNIRDGYDKIYRQEQVLARMEEKTLITAG
GNVKWCSHFRKQIGGQWLTLETKTKTPQPFSSTSQISTDKDKGLNPQLLKMDPGHMGWSD
TPAQLSAGEEAQKRFRGLKDILLPCPYEQAISAP

>gi568815578r:5447664_5704412|GENSCAN_predicted_CDS_4|1185_bp
atggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccagtg
actttcttcacagaattgggaaaaactactttaaggttcatatggaaccaaaaaagagcc
tgcattggcaagtcagtcctaagccaaaagaacaaagctggaggcatcacactacctgac
ttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacaga
gatatagaccaatggaacagaacagagtcctcagaaataatgctgcatatctacaaccat
ctgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaataaa
tggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttaca
tctcatacaaaaattaattcaagatggattaaagacttaaatgttagacctaaaaccata
aaaaccctagaagaaaacctaggcaataccattcaggccataggcatgggcaaggacttc
atgactaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaatt
aaactaaagagcttctgcacagcaaaagaaactaccatcagactgctaggcaggcctcct
gcgctcttcactgcctctagcagcgtcttgaaacagctggctctggaaggcatcctgatt
ctggattcaagagctttgcttggatttctgtatgaagctcggcacagtcacagcaactct
ccaaatcatgacgctcaaaatgccacatctaaaaagaacatccgggatggctatgataaa
atctacagacaagaacaagtgttagcaaggatggaggaaaaaaccctcatcactgctggt
gggaatgtgaaatggtgcagccactttagaaaacagattggcggccagtggctaacactg
gagacgaagaccaagacaccacagcctttctccagtacctctcaaatcagcacagacaag
gacaaaggcctcaatccacaactgctgaagatggaccctggccacatgggatggtcagac
acgcctgcccagctatctgcaggcgaagaggctcagaagaggtttaggggcctgaaggac
atcttgcttccatgtccatatgagcaggctatttctgctccatga

>gi568815578r:5447664_5704412|GENSCAN_predicted_peptide_5|428_aa
MIVYLENPIVSAQNLLKLISNFNKVSGYKINVQKSQAFVYTNNRQTESQIMSELPFTIAS
KRIKYLGIQLTRDVKDFFKENYKPLLNEIKEDTNKWKKIPCSWVGRINIVKMAILPKVIY
RFNAIPIKLPMTFFTKLEKTTLKFIWNQKRAHIAKTILSQKNKAGSIALPDFKLYWKATV
TKTAWYWYQNRDIDQWNRIEPSEIIPHIYNHLIFDKPDKNKKWGKDSLFNKWCWENWLAI
CRKLKLDPFLTPYTKINSRWIKDLNVRPKTIKTLEENLGNTIQAMGMGKDFMTETPKAMA
TKAKIDKWDLIKLKSFCTAKETTIRVNRQPTEWEKIFTIYPSDKGLISRIYNELKQINKK
KSNNPINKWAKDMNRRFSKEDIYAANRHMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIK
KSGNNRCW

>gi568815578r:5447664_5704412|GENSCAN_predicted_CDS_5|1287_bp
atgattgtatatttagaaaaccccatcgtctcagcccaaaatctccttaagctgataagc
aacttcaacaaagtctcaggatacaaaatcaatgtgcaaaaatctcaagcattcgtatac
accaataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttca
aagagaataaaatacctaggaatccaacttacaagggacgtgaaggacttctttaaggag
aactacaaaccactgctcaacgaaataaaagaggacacaaacaaatggaagaaaattcca
tgctcatgggtaggaagaatcaatattgtgaaaatggccatactgcccaaggtaatttat
agattcaatgccatccccatcaagctaccaatgactttcttcacaaaattggaaaaaact
actttaaagttcatatggaaccaaaaaagagcccacattgccaagacaatcctaagccaa
aagaacaaagctggaagcatcgcgctacctgacttcaaactatactggaaggccacagta
accaaaacagcgtggtattggtaccaaaacagagatatagatcaatggaacagaatagag
ccctcagaaataataccacatatctacaaccatctgatctttgacaaacctgacaaaaac
aagaaatggggaaaggattccctatttaataaatggtgctgggaaaactggctagccata
tgtagaaagctgaaactggatcccttccttacaccttatacaaaaattaattcaagatgg
attaaagacttaaatgttagacctaaaaccataaaaaccctagaagaaaacctaggtaat
actattcaggccatgggcatgggcaaggacttcatgactgaaacaccaaaagcaatggca
acaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaa
gaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatttttacaatctac
ccatctgacaaagggctaatatccagaatctacaatgaactcaaacaaattaacaagaaa
aaatcaaacaatcccatcaataagtgggcaaaggatatgaacagacgcttctcaaaagaa
gacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggccatcagagaa
atgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcgatcattaaa
aagtcaggaaacaacaggtgctggtga

>gi568815578r:5447664_5704412|GENSCAN_predicted_peptide_6|47_aa
MQNPCQPKIPDWFSNRQKDIKDGKYSQDLANGLDNNLCENLEQLKKI

>gi568815578r:5447664_5704412|GENSCAN_predicted_CDS_6|144_bp
atgcagaatccatgccagcccaagatcccagactggttctcaaacagacagaaagatata
aaggacggaaaatatagccaggacctggccaatggtctggataacaacctctgtgagaac
ctggagcaactgaagaagatttga

>gi568815578r:5447664_5704412|GENSCAN_predicted_peptide_7|840_aa
MVGKKSTCYRSNREQPKLDLGGMEIPNSQSHKVALLVTVLQSSFKRILSGWALQLEAPIE
AVGSAEMENIHHRGDFLVTFPSSSRSSFVQTGQFSGRDIDKDPKLSPVGRGWGFEWAIEL
CMAVKEDVRQEVGSHIGLLPDVAMAFVNCRGTDGSVAVRMTRGHSHCHLGFGGFGGPQYK
PMTPGQLSNVRAPGSAEKGSGDTGDARPPSAAPPGGSAGEARTAGARYLCPRSSLSGGAA
ATRTCGLANPEEEGPSAKCGENGSAERTDLGGNKYNQERIQIEYVEVLFADFFREVFAIC
GSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFKGVKLTLEGLEEDD
DDRVSPTVLHKMSNSLEISLISDNEFKCRHSQPECGYGLQPDRWTEYSIQTMEPDNLELI
FDFFEEDLSEHVVQGDALPGHVGTACLLSSTIAESGKSAGILTLPIMSRNSRKTIGKVRV
DYIIIKPLPGYSCDMKSSFSKYWKPRIPLDVGHRGAGNSTTTAQLAKVQENTIASLRNAA
SHGAAFVEFDVHLSKDFVPVVYHDLTCCLTMKKKFDADPVELFEIPVKELTFDQLQLLKL
THVTALKSKDRKESVVQEENSFSENQPFPSLKMDGMWDGNLSTYFDMNLFLDIILKTVLE
NSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQGKSEIYPELMDLRSRTTPIAMSFAQF
ENLLGINVHTEDLLRNPSYIQEAKAKGLVIFCWGDDTNDPENRRKLKELGVNGLIYDRIY
DWMPEQPNIFQVEQLERLKQELPELKSCLCPTVSRFVPSSLCGESDIHVDANGIDNVENA

>gi568815578r:5447664_5704412|GENSCAN_predicted_CDS_7|2523_bp
atggtgggcaagaagagcacctgctacaggtctaacagggagcagcctaaactggaccta
gggggcatggagatccctaacagccaaagccataaagttgcactgctggtcacagtgctc
caatcttcattcaagaggattctctcaggctgggctctgcagctggaggcccccatagag
gcggtgggctccgctgagatggaaaacattcatcatcgcggtgacttccttgtaaccttt
ccaagttcttcacgttcctcatttgttcagactggacagttctctgggagggacatagac
aaggacccaaaactaagtcctgtgggcaggggctggggttttgaatgggctatagagcta
tgcatggcagtcaaagaggatgttcgacaggaagtaggaagccatatagggttacttcct
gatgttgccatggcatttgtaaactgtcgtggcactgatgggagtgtagcagtgaggatg
accagaggtcactctcattgccatcttggttttggcggctttggtggaccacagtacaag
cctatgaccccagggcagctctccaacgtgcgggcgccggggtcggctgagaagggcagc
ggggacacgggggatgcccggccgccctcggccgcgccgcctggggggagcgctggcgag
gcacggacggcgggcgcccggtacctctgcccgcggtcctcgctctcgggcggggcggcg
gcgacgcggacctgcggactagcgaacccggaggaggaaggaccctctgctaaatgtggc
gagaatggtagtgcagagaggactgaccttgggggaaacaagtacaaccaggagaggata
caaatagagtatgtggaggtgctgtttgcagatttctttagagaagtttttgcgatatgt
ggaagctgtgatgctttgggaaactggaatcctcaaaatgctgtggctcttcttccagag
aatgacacaggtgaaagcatgctatggaaagcaaccattgtactcagtagaggagtatca
gttcagtatcgctacttcaaaggggtgaagctgacactagaaggcctggaggaagatgac
gatgatagggtatctcccactgtactccacaaaatgtccaatagcttggagatatcctta
ataagcgacaatgagttcaagtgcaggcattcacagccggagtgtggttatggcttgcag
cctgatcgttggacagagtacagcatacagacgatggaaccagataacctggaactaatc
tttgattttttcgaagaagatctcagtgagcacgtagttcagggtgatgcccttcctgga
catgtgggtacagcttgtctcttatcatccaccattgctgagagtggaaagagtgctgga
attcttactcttcccatcatgagcagaaattcccggaaaacaataggcaaagtgagagtt
gactatataattattaagccattaccaggatacagttgtgacatgaaatcttcattttcc
aagtattggaagccaagaataccattggatgttggccatcgaggtgcaggaaactctaca
acaactgcccagctggctaaagttcaagaaaatactattgcttctttaagaaatgctgct
agtcatggtgcagcctttgtagaatttgacgtacacctttcaaaggactttgtgcccgtg
gtatatcatgatcttacctgttgtttgactatgaaaaagaaatttgatgctgatccagtt
gaattatttgaaattccagtaaaagaattaacatttgaccaactccagttgttaaagctc
actcatgtgactgcactgaaatctaaggatcggaaagaatctgtggttcaggaggaaaat
tccttttcagaaaatcagccatttccttctcttaagatggatggaatgtgggatggtaac
ttatcaacatattttgacatgaatctgtttttggatataattttaaaaactgttttagaa
aattctgggaagaggagaatagtgttttcttcatttgatgcagatatttgcacaatggtt
cggcaaaagcagaacaaatatccgatactatttttaactcaaggaaaatctgagatttat
cctgaactcatggacctcagatctcggacaacccccattgcaatgagctttgcacagttt
gaaaatctactggggataaatgtacatactgaagacttgctcagaaacccatcctatatt
caagaggcaaaagctaagggactagtcatattctgctggggtgatgataccaatgatcct
gaaaacagaaggaaattgaaggaacttggagttaatggtctaatttatgataggatatat
gattggatgcctgaacaaccaaatatattccaagtggagcaattggaacgcctgaagcag
gaattgccagagcttaagagctgtttgtgtcccactgttagccgctttgttccctcatct
ttgtgtggggagtctgatatccatgtggatgccaacggcattgataacgtggagaatgct
tag