GENSCAN 1.0	Date run:  2-Nov-116	Time: 20:58:06

Sequence gi568815581r:29164542_29393892 : 229351 bp : 44.42% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 PlyA -    714    709    6                              -0.45
 1.01 Sngl -   2399   1338 1062  2  0   76   42  1408 0.776 132.16
 1.00 Prom -  10824  10785   40                              -7.36

 2.00 Prom +  11216  11255   40                              -4.56
 2.01 Init +  12419  12479   61  1  1   96   55    36 0.798   2.45
 2.02 Term +  15517  16058  542  2  2  113   54   165 0.756  10.02
 2.03 PlyA +  19017  19022    6                               1.05

 3.05 PlyA -  19078  19073    6                               1.05
 3.04 Term -  27342  27133  210  0  0   32   48    97 0.137  -2.61
 3.03 Intr -  32619  32581   39  0  0   88   75    46 0.312   1.72
 3.02 Intr -  33258  33180   79  2  1  118   86    56 0.641   7.95
 3.01 Init -  35102  35062   41  2  2   52   63    77 0.711   1.29
 3.00 Prom -  36921  36882   40                              -5.76

 4.02 PlyA -  37038  37033    6                               1.05
 4.01 Sngl -  39933  39136  798  0  0   99   48   336 0.979  26.56
 4.00 Prom -  53982  53943   40                              -4.66

 5.00 Prom +  55671  55710   40                              -0.26
 5.01 Init +  60827  60910   84  1  0   77   80    69 0.503   5.82
 5.02 Intr +  76092  76118   27  2  0  100   94    -1 0.138   0.01
 5.03 Intr +  77056  77144   89  0  2  108   58    62 0.218   3.97
 5.04 Intr +  84601  84665   65  1  2   88  121    85 0.098  10.16
 5.05 Intr +  85612  85759  148  2  1   87   77    82 0.338   6.29
 5.06 Intr +  87523  87664  142  1  1   50   68    88 0.878   3.36
 5.07 Intr +  89099  89234  136  1  1   23    9   207 0.697   6.44
 5.08 Term +  89661  89812  152  1  2   66   38   171 0.873   7.97
 5.09 PlyA +  89928  89933    6                               1.05

 6.06 PlyA -  90987  90982    6                               1.05
 6.05 Term - 100050  99998   53  1  2   81   49    47 0.304  -2.31
 6.04 Intr - 102989 102957   33  0  0  112  116     3 0.262   3.69
 6.03 Intr - 123175 121451 1725  2  0  123   88   876 0.852  78.42
 6.02 Intr - 129446 129242  205  2  1   47   41   201 0.002  10.07
 6.01 Init - 139433 139341   93  2  0   46   80    28 0.013  -1.82
 6.00 Prom - 170064 170025   40                              -2.36

 7.00 Prom + 170733 170772   40                              -2.96
 7.01 Init + 172560 172577   18  2  0   81  116     4 0.644   2.83
 7.02 Term + 179322 179465  144  2  0   81   28   103 0.909   1.51
 7.03 PlyA + 180677 180682    6                               1.05

 8.00 Prom + 180993 181032   40                              -2.66
 8.01 Init + 181974 182043   70  2  1   65   58   112 0.590   5.11
 8.02 Intr + 204464 204594  131  0  2   10   72    54 0.001  -3.59
 8.03 Intr + 226415 226483   69  1  0  112   86    64 0.006   7.98

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:29164542_29393892|GENSCAN_predicted_peptide_1|353_aa
MFNLMKKDKDKDGGRKEKKEKKEKKERMSAAELRSLEEMSLRRGFFNLNRSSKRESKTRL
EISNPIPIKVASGSDLHLTDIDSDSNRGSVILDSGHLSTASSSDDLKGEEGSFRGSVLQR
AAKFGSLAKQNSQMIVKRFSFSQRSRDESASETSTPSEHSAAPSPQVEVRTLEGQLVQHP
GPGIPRPGHRSRAPELVTKKFPVDLRLPPVVPLPPPTLRELELQRRPTGDFGFSLRRTTM
LDRGPEGQACRRVVHFAEPGAGTKDLALGLVPGDRLVEINGHNVESKSRDEIVEMIRQSG
DSVRLKVQPIPELSELSRSWLRSGEGPRREPSDVSASLGTWAKQGWGMWAPPA

>gi568815581r:29164542_29393892|GENSCAN_predicted_CDS_1|1062_bp
atgtttaacctaatgaagaaagacaaggacaaagatggcgggcggaaggagaagaaggag
aaaaaggagaaaaaggagcggatgtcagcggcagagcttcggagcctggaggagatgagc
ctgcgacgtggcttcttcaacctgaaccgctcctccaagcgtgaatccaagacgcgcctg
gaaatctccaaccccatccccatcaaggtggccagcggctctgacctgcacctgactgac
attgactccgatagtaaccggggcagcgtcatcctggactcgggccacctaagtacagcc
agctccagcgatgacctcaagggtgaggagggtagcttccgtggctcggtgctgcagcgg
gcagccaagttcggctcactggccaagcagaactcacagatgattgtcaagcgcttttcc
ttctcccagcgtagccgggatgagagcgcctcagaaacctcgacgccctcagagcactct
gccgccccctcgccacaggtggaggtgaggactctagagggacagctggtgcagcatcct
ggcccaggcatccctcgaccagggcaccgatcccgagcccctgagctagtgactaaaaag
ttcccagtcgacctgcgcctgccccccgtggtgcccctgcccccacctaccctccgggag
ctggagctgcaacgacggcccactggagactttggcttctccctgcggcgcacaaccatg
ctggatcggggccccgagggccaggcctgtcggcgtgtggtccactttgctgagcctggt
gcaggcaccaaggacctggccctggggctggtgccaggagatcgactggtggagattaat
gggcacaatgtggagagcaagtccagggatgagattgtggagatgatccggcagtcaggg
gacagcgtgcggctcaaggtgcagcccattccagagctcagcgagctcagcaggagctgg
ctgcggagcggcgagggacctcgcagggagccatccgatgtgagtgcttccctgggcacc
tgggctaagcagggatggggaatgtgggcacctcctgcttga

>gi568815581r:29164542_29393892|GENSCAN_predicted_peptide_2|200_aa
MEERERESSCGLARFPAALPGWLEGPVVPPSPPLPIGPHPRASSSTAPPGTGAGSPGRCF
QGTGEEEEEPAGPAARPPSLPAGARPAAPPSRARHRAAAAADRHSPATGARPAGSRSGDA
ASSSLGPVRDGAERSAAQLSAAPSDRAGRAERELPAGGCGDKRPACLAAPVRAARRGPGG
PGAALAASVRCGLRSPSRCV

>gi568815581r:29164542_29393892|GENSCAN_predicted_CDS_2|603_bp
atggaggaacgcgagcgggagagctcctgcggcctcgccaggttccctgctgctcttcca
ggttggctggaagggccggtggttcccccttccccgccgctcccgatcggcccccacccc
cgggcgtcgagctccacggcgccgccagggacgggagccgggagtccgggccgctgcttc
caggggacgggggaggaggaggaggagccggcgggccccgccgcccgcccgccctccctc
ccggccggagcccgccccgccgccccaccaagccgggcccgccaccgagcggccgccgcc
gccgaccggcactcaccggccaccggagcccgcccggcaggcagcagaagcggagacgcg
gcatccagcagcctcggcccggtcagggatggagcagagcgcagcgcggcgcagctcagc
gccgcccccagcgaccgcgcaggccgagccgaaagggagctccctgctggcggctgtggg
gataaacgcccggcctgcctggcagcgccagtgcgcgccgccagacgtgggccaggcggg
ccgggcgctgccctggcagcctccgtccgctgtggactccgaagcccctctcgctgtgtc
tga

>gi568815581r:29164542_29393892|GENSCAN_predicted_peptide_3|122_aa
MPVAILVDCVLQDQNHKMSDWSFLGWLLTRVQNDSTVVGKSHEEENLPELHVQRKLFTIK
SFTESVLTPELGHWEPLRNPKPRSDMIIFVLWKDNSGSHMEDQLEGMKRKQATTRRPLLL
SS

>gi568815581r:29164542_29393892|GENSCAN_predicted_CDS_3|369_bp
atgcctgtggccatcctagtggactgcgtcctccaggaccaaaatcacaagatgagcgac
tggtcattcctgggctggctcctgacccgagtgcagaacgattccaccgtggttggcaag
agccatgaggaagaaaatcttcctgaacttcatgtgcagcgtaaactatttaccatcaag
tcctttacagaaagtgtgctgacccctgagctgggccattgggaacctttgaggaatccc
aagccaagaagtgacatgatcatatttgtattatggaaagacaactctggcagccacatg
gaggaccagttagaggggatgaagcggaagcaggcgaccacgagaaggccgttgctattg
tccagctaa

>gi568815581r:29164542_29393892|GENSCAN_predicted_peptide_4|265_aa
MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
IFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVGVDTKHQTLQGVAF
PISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDSARYHFFL
YKHSHEGDYLESIVLFIQCLDTHAV

>gi568815581r:29164542_29393892|GENSCAN_predicted_CDS_4|798_bp
atgtcccaccagaccggcatccaagcaagtgaagatgttaaagagatctttgccagagcc
agaaatggaaagtacagacttctgaaaatatctattgaaaatgagcaacttgtgattgga
tcatatagtcagccttcagattcctgggataaggattatgattcctttgttttacccctg
ttggaggacaaacaaccatgctatatattattcaggttagattctcagaatgcccaggga
tatgaatggatattcattgcatggtctccagatcattctcatgttcgtcaaaaaatgttg
tatgcagcaacaagagcaactctgaagaaggaatttggaggtggccacattaaagatgaa
atatttggaacagtaaaggaagatgtatcattacatggatataaaaaatacttgctgtca
caatcttcccctgccccactgactgcagctgaggaagaattacgacagattaaaatcaat
gaggtacagactgacgtgggtgtggacactaagcatcaaacactacaaggagtagcattt
cccatttctcgagaagcctttcaggctttggaaaaattgaataacagacagctcaactat
gtgcagttggaaatagatataaaaaatgaaattataattttggccaacacaacaaataca
gaactgaaagatttgccaaagaggattcccaaggattcagctcgttaccatttctttctg
tataaacattcccatgaaggagactatttagagtccatagttttatttattcaatgcctg
gatacacatgcagtataa

>gi568815581r:29164542_29393892|GENSCAN_predicted_peptide_5|280_aa
MVYSMRSSKTGIQKEKNHNSGGKAADKEDAVVGWSAWRQGQGVKAIHKIPLSIYAAWRVA
LVSRSPRNPSNHQDGSDQPYAGVPGAMEALLRHSISFQITIYDQENFQGKRMEFTSSCPN
VSERSFDNVRSLKVESGAWIGYEHTSFCGQQFILERGEYPRWDAWSGSNAYHIERLMSFR
PICSANHKESKMTIFEKENFIGRQWEISDDYPSLQAMGWFNNEVGSMKIQTGFATNILDI
VGISISWNVTIMEETINIGESGALMPRLRRSNRFAESNSS

>gi568815581r:29164542_29393892|GENSCAN_predicted_CDS_5|843_bp
atggtgtatagcatgagaagctccaaaacaggaattcagaaggagaaaaatcacaacagt
ggagggaaggcagcagacaaagaggatgctgtggttggctggtcagcctggaggcaaggc
cagggagtcaaagccatccacaaaattccactgagcatctatgctgcttggcgtgtagcc
ctggtgtccagaagcccaagaaacccttccaaccaccaagatggctcagaccaaccctac
gccggggtccctggggccatggaagctctcttgcgccattcaatctcatttcagataacc
atctatgatcaggagaactttcagggcaagaggatggagttcaccagctcctgtccaaat
gtctctgagcgcagttttgataatgtccggtccctgaaggtggaaagtggcgcctggatt
ggttatgagcataccagcttctgtgggcaacagtttatcctggagagaggagaataccct
cgctgggatgcctggagtgggagtaatgcctaccacattgagcgtctcatgtccttccgc
cccatctgttcagctaatcataaggagtctaagatgaccatctttgagaaggaaaacttt
attggacgccagtgggagatctctgacgactacccctccttgcaagccatgggctggttc
aacaacgaagtcggctccatgaagatacaaactgggtttgctaccaatatcctggatatc
gtgggtatcagtatatcttggaatgtgaccatcatggaggagactataaacattggagag
agtggggctctcatgcccagacttcgcagatccaatcgattcgccgaatccaacagtagc
tga

>gi568815581r:29164542_29393892|GENSCAN_predicted_peptide_6|702_aa
MEKLPVKSHEELSSSVQHLMGLKTKSYQQPWQQQQQPHHHHHYYFYNHSHNHHHHHHHQQ
PHQYLQHGAEGSPKAQPKPLKHEQKHTLQQHQETPKKKTGYGELNGNAGEREISLKNLSS
DEATNPISRVLNGNQQVVDTSLKQTVKANTFGKAGIKTKNFIQKNSMDKKNGKSYENKSG
ENQSVDKSDTIPIPNGVVTNNSGYITNGYMGKGADNDGSGSESGYTTPKKRKARRNSAKG
CENLNIVQDKIMQQETSVPTLKQGLETFKPDYSEQKGNRVDGSKPIWKYETGPGGTSRGK
PAVGDMLRKSSDSKPGVSSKKFDDRPKGKHASAVASKEDSWTLFKPPPVFPVDNSSAKIV
PKISYASKVKENLNKTIQNSSVSPTSSSSSSSSTGETQTQSSSRLSQVPMSALKSVTSAN
FSNGPVLAGTDGNVYPPGGQPLLTTAANTLTPISSGTDSVLQDMSLTSAAVEQIKTSLFI
YPSNMQTMLLSTAQVDLPSQTDQQNLGDIFQNQWGLSFINEPSAGPETVTGKSSEHKVME
VTFQGEYPATLVSQGAEIIPSGTEHPVFPKAYELEKRTSPQVLGSILKSGTTSESGALSL
EPSHIGDLQKADTSSQGALVFLSKDYEIESQNPLASPTNTLLGSAKEQRYQRGLERNDSW
GSFDLRAAIVYHTKEMESIWNLQKQDPKRIITYNEAMDSPDQ

>gi568815581r:29164542_29393892|GENSCAN_predicted_CDS_6|2109_bp
atggagaaacttccagtgaaaagtcatgaggaactgagttcttcagtccaacacctcatg
gggttgaaaactaagtcctaccaacaaccatggcagcagcagcagcagccgcaccaccac
caccattattatttctacaaccacagccacaaccaccaccaccaccatcatcaccagcag
cctcaccaatacctgcagcatggagccgagggcagccccaaggcccagccaaagccgctg
aaacatgagcagaaacacaccctccagcagcaccaggaaacgccgaagaagaaaacaggc
tatggtgaactaaacggtaatgctggagaaagagaaatatctttaaagaacctgagttct
gatgaagccaccaaccctatttccagggtcctcaatggcaaccagcaagttgtagacact
agcctgaagcagactgtaaaggccaacacctttgggaaagcaggaattaaaaccaagaat
ttcattcagaaaaacagtatggacaaaaagaatgggaagtcttatgaaaataaatctgga
gagaatcagtctgtagataagtctgatactataccaattccaaatggtgtggtaacaaat
aattctggttatattactaatggttatatgggtaaaggagcagataatgatggtagtgga
tctgagagcggatatacaactcctaaaaaaaggaaagctaggcgcaatagtgccaagggt
tgtgaaaaccttaatatagtgcaggacaaaataatgcaacaagagaccagtgtcccaacc
ttaaaacagggacttgaaactttcaagcctgactatagtgaacaaaagggaaatcgagta
gatggttcgaagcccatttggaagtatgaaactgggcctggaggaacaagtcgaggaaaa
cctgctgtgggtgatatgcttcggaaaagctcagatagtaaacctggtgtgagcagcaaa
aagtttgatgatcggcccaaaggaaagcatgcttcagctgttgcctccaaagaggactcg
tggaccctatttaaaccacccccagtttttccagtggacaatagcagtgctaaaatagtt
cctaaaataagttatgcaagcaaagttaaggaaaacctcaacaaaactatacagaactct
tctgtgtcaccaacttcatcttcatcatcttcatcatctaccggggaaactcagacccaa
tcatcaagtcgcttatcccaggtccctatgtcagcgctgaaatctgttacttctgccaac
ttttctaatgggcctgttttagcagggactgatggaaatgtttatcctccagggggtcag
ccactgctaactactgctgctaatactctaacacccatctcttctgggacagattcagtt
ctccaggacatgagtctaacttcagcagctgttgaacaaattaagactagcctttttatc
tatccttcaaatatgcaaactatgctgttgagcacagcacaagtggatctgccctctcag
acagatcagcaaaacctgggggatatcttccagaatcagtggggtttatcatttataaat
gagcccagtgctggccctgagactgttactgggaagtcatcagagcataaagtgatggag
gtgacatttcaaggagaatatcctgctactttggtttcacagggtgctgaaataattccc
tcaggaactgagcatcctgtgtttcccaaggcttacgagctggagaaacggactagtcct
caagttctgggtagcattctaaaatctgggactactagtgagagtggagccttatccttg
gaacccagtcatataggtgacctgcagaaagcagacaccagtagtcaaggtgctttagtg
tttctctcaaaggactacgagatagaaagtcaaaatcctctggcctctcctacgaacact
ttgttaggctctgccaaagaacagagataccagagaggcctagaaaggaatgatagctgg
ggttcttttgacctgagggctgctattgtatatcacactaaagaaatggaatctatttgg
aatttgcagaagcaagatcccaaaaggataatcacttacaatgaagccatggatagtcca
gatcaatga

>gi568815581r:29164542_29393892|GENSCAN_predicted_peptide_7|53_aa
MNVRVKISDLISHNQGNTMMMLEKGPNPDPKRGVLGSHAERNSRQVTECSKKR

>gi568815581r:29164542_29393892|GENSCAN_predicted_CDS_7|162_bp
atgaatgtgagagtcaagatttctgatctaatcagccacaaccagggtaacacaatgatg
atgctggaaaaaggtcccaacccagaccctaaaagaggggttcttggatctcatgcagaa
aggaattcaaggcaagtcacagagtgcagcaagaagagataa

>gi568815581r:29164542_29393892|GENSCAN_predicted_peptide_8|90_aa
MLARLVSPGQAGLTMLARLILTSGGWLRSTLISSESKAALNPATLYRQFYTNTLAPMATA
TQLSEALGSGYRSAAGGCACLLRPRPVGER

>gi568815581r:29164542_29393892|GENSCAN_predicted_CDS_8|270_bp
atgttggccaggctggtctcacctggccaggctggtctgaccatgttggccaggctgatc
ctgacctcagggggctggctcaggtctactctaatcagctctgaatcaaaagcagccctc
aatcctgccaccttgtataggcagttctatacaaacacactcgcccccatggcaacggcc
actcagctctcagaagcactgggtagcggctaccggagcgctgcagggggctgcgcctgc
ctgctccgccccagacctgtcggcgaaagg