Result of FASTA (ccds) for pF1KA1273
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1273, 602 aa
  1>>>pF1KA1273 602 - 602 aa - 602 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8684+/-0.00124; mu= 3.3986+/- 0.073
 mean_var=251.0126+/-49.892, 0's: 0 Z-trim(109.2): 53  B-trim: 17 in 1/49
 Lambda= 0.080952
 statistics sampled from 10704 (10744) to 10704 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.33), width:  16
 Scan time:  3.260

The best scores are:                                      opt bits E(32554)
CCDS30.1 ATAD3B gene_id:83858|Hs108|chr1           ( 648) 3652 440.4 3.4e-123
CCDS31.1 ATAD3A gene_id:55210|Hs108|chr1           ( 634) 3187 386.1 7.4e-107
CCDS53260.1 ATAD3A gene_id:55210|Hs108|chr1        ( 507) 2894 351.8 1.3e-96
CCDS53259.1 ATAD3A gene_id:55210|Hs108|chr1        ( 586) 2894 351.8 1.4e-96
CCDS44039.1 ATAD3C gene_id:219293|Hs108|chr1       ( 411) 2097 258.6 1.1e-68


>>CCDS30.1 ATAD3B gene_id:83858|Hs108|chr1                (648 aa)
 initn: 3652 init1: 3652 opt: 3652  Z-score: 2325.3  bits: 440.4 E(32554): 3.4e-123
Smith-Waterman score: 3652; 99.8% identity (100.0% similar) in 556 aa overlap (47-602:93-648)

         20        30        40        50        60        70      
pF1KA1 SLCRAGAVQTQERLSGSASPEQVPAGECCALQEYEAAVEQLKSEQIRAQAEERRKTLSEE
                                     :.::::::::::::::::::::::::::::
CCDS30 RELEHSRYAKEALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQIRAQAEERRKTLSEE
             70        80        90       100       110       120  

         80        90       100       110       120       130      
pF1KA1 TRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRH
            130       140       150       160       170       180  

        140       150       160       170       180       190      
pF1KA1 KNEMLRVETEARARAKAERENADIIREQIRLKASEHRQTVLESIRTAGTLFGEGFRAFVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KNEMLRVETEARARAKAERENADIIREQIRLKASEHRQTVLESIRTAGTLFGEGFRAFVT
            190       200       210       220       230       240  

        200       210       220       230       240       250      
pF1KA1 DRDKVTATVAGLTLLAVGVYSAKNATAVTGRFIEARLGKPSLVRETSRITVLEALRHPIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DRDKVTATVAGLTLLAVGVYSAKNATAVTGRFIEARLGKPSLVRETSRITVLEALRHPIQ
            250       260       270       280       290       300  

        260       270       280       290       300       310      
pF1KA1 VSRRLLSRPQDVLEGVVLSPSLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VSRRLLSRPQDVLEGVVLSPSLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFA
            310       320       330       340       350       360  

        320       330       340       350       360       370      
pF1KA1 KKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRAT
            370       380       390       400       410       420  

        380       390       400       410       420       430      
pF1KA1 EEISKDLRATLNAFLYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EEISKDLRATLNAFLYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERE
            430       440       450       460       470       480  

        440       450       460       470       480       490      
pF1KA1 RLVRLHFDNCVLKPATEGKRRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RLVRLHFDNCVLKPATEGKRRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAY
            490       500       510       520       530       540  

        500       510       520       530       540       550      
pF1KA1 ASKDGVLTEAMMDACVQDAVQQYRQKMRWLKAEGPGRGVEHPLSGVQGETLTSWSLATDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ASKDGVLTEAMMDACVQDAVQQYRQKMRWLKAEGPGRGVEHPLSGVQGETLTSWSLATDP
            550       560       570       580       590       600  

        560       570       580       590       600  
pF1KA1 SYPCLAGPCTFRICSWMGTGLCPGPLSPRMSCGGGRPFCPPGHPLL
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SYPCLAGPCTFRICSWMGTGLCPGPLSPRMSCGGGRPFCPPGHPLL
            610       620       630       640        

>>CCDS31.1 ATAD3A gene_id:55210|Hs108|chr1                (634 aa)
 initn: 3205 init1: 3179 opt: 3187  Z-score: 2031.9  bits: 386.1 E(32554): 7.4e-107
Smith-Waterman score: 3187; 93.5% identity (97.8% similar) in 536 aa overlap (1-536:95-630)

                                             10        20        30
pF1KA1                               MQLEALNLLHTLVWARSLCRAGAVQTQERL
                                     :.::::.:::::::: ::::::::::::::
CCDS31 LEHSRYAKDALNLAQMQEQTLQLEQQSKLKMRLEALSLLHTLVWAWSLCRAGAVQTQERL
           70        80        90       100       110       120    

               40        50        60        70        80        90
pF1KA1 SGSASPEQVPAGECCALQEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SGSASPEQVPAGECCALQEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKL
          130       140       150       160       170       180    

              100       110       120       130       140       150
pF1KA1 ARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRHKNEMLRVETEARAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS31 ARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRHKNEMLRVEAEARAR
          190       200       210       220       230       240    

              160       170       180       190       200       210
pF1KA1 AKAERENADIIREQIRLKASEHRQTVLESIRTAGTLFGEGFRAFVTDRDKVTATVAGLTL
       :::::::::::::::::::.::::::::::::::::::::::::::: ::::::::::::
CCDS31 AKAERENADIIREQIRLKAAEHRQTVLESIRTAGTLFGEGFRAFVTDWDKVTATVAGLTL
          250       260       270       280       290       300    

              220       230       240       250       260       270
pF1KA1 LAVGVYSAKNATAVTGRFIEARLGKPSLVRETSRITVLEALRHPIQVSRRLLSRPQDVLE
       :::::::::::: :.::::::::::::::::::::::::::::::::::::::::::.::
CCDS31 LAVGVYSAKNATLVAGRFIEARLGKPSLVRETSRITVLEALRHPIQVSRRLLSRPQDALE
          310       320       330       340       350       360    

              280       290       300       310       320       330
pF1KA1 GVVLSPSLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIM
       ::::::::::::::::::::::::::.:::.::.::::::::::::::::::::::::::
CCDS31 GVVLSPSLEARVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLALHSGMDYAIM
          370       380       390       400       410       420    

              340       350       360       370       380       390
pF1KA1 TGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRATEEISKDLRATLNAF
       :::::::::::::::::::::::::::::::::.:::::::::::::.::.:::::::::
CCDS31 TGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAF
          430       440       450       460       470       480    

              400       410       420       430       440       450
pF1KA1 LYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERERLVRLHFDNCVLKP
       ::. :::::::::::::: ::::: :::.::. ::::::: :::::::::..::. ::::
CCDS31 LYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPGQEERERLVRMYFDKYVLKP
          490       500       510       520       530       540    

              460       470       480       490       500       510
pF1KA1 ATEGKRRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAYASKDGVLTEAMMDA
       :::::.::::::::::::::::::::::::::::::::::::::::::.::::::::::.
CCDS31 ATEGKQRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAYASEDGVLTEAMMDT
          550       560       570       580       590       600    

              520       530       540       550       560       570
pF1KA1 CVQDAVQQYRQKMRWLKAEGPGRGVEHPLSGVQGETLTSWSLATDPSYPCLAGPCTFRIC
        :::::::..::: :::::::::: :                                  
CCDS31 RVQDAVQQHQQKMCWLKAEGPGRGDEPSPS                              
          610       620       630                                  

>>CCDS53260.1 ATAD3A gene_id:55210|Hs108|chr1             (507 aa)
 initn: 2913 init1: 2887 opt: 2894  Z-score: 1848.3  bits: 351.8 E(32554): 1.3e-96
Smith-Waterman score: 2894; 93.3% identity (97.8% similar) in 490 aa overlap (47-536:14-503)

         20        30        40        50        60        70      
pF1KA1 SLCRAGAVQTQERLSGSASPEQVPAGECCALQEYEAAVEQLKSEQIRAQAEERRKTLSEE
                                     :.::::::::::::::::::::::::::::
CCDS53                  MQEQTLQLEQQSKLKEYEAAVEQLKSEQIRAQAEERRKTLSEE
                                10        20        30        40   

         80        90       100       110       120       130      
pF1KA1 TRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRH
            50        60        70        80        90       100   

        140       150       160       170       180       190      
pF1KA1 KNEMLRVETEARARAKAERENADIIREQIRLKASEHRQTVLESIRTAGTLFGEGFRAFVT
       ::::::::.::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS53 KNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTVLESIRTAGTLFGEGFRAFVT
           110       120       130       140       150       160   

        200       210       220       230       240       250      
pF1KA1 DRDKVTATVAGLTLLAVGVYSAKNATAVTGRFIEARLGKPSLVRETSRITVLEALRHPIQ
       : :::::::::::::::::::::::: :.:::::::::::::::::::::::::::::::
CCDS53 DWDKVTATVAGLTLLAVGVYSAKNATLVAGRFIEARLGKPSLVRETSRITVLEALRHPIQ
           170       180       190       200       210       220   

        260       270       280       290       300       310      
pF1KA1 VSRRLLSRPQDVLEGVVLSPSLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFA
       :::::::::::.::::::::::::::::::::::::::::.:::.::.::::::::::::
CCDS53 VSRRLLSRPQDALEGVVLSPSLEARVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFA
           230       240       250       260       270       280   

        320       330       340       350       360       370      
pF1KA1 KKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRAT
       :::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS53 KKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRKRAT
           290       300       310       320       330       340   

        380       390       400       410       420       430      
pF1KA1 EEISKDLRATLNAFLYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERE
       :.::.:::::::::::. :::::::::::::: ::::: :::.::. ::::::: :::::
CCDS53 EKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPGQEERE
           350       360       370       380       390       400   

        440       450       460       470       480       490      
pF1KA1 RLVRLHFDNCVLKPATEGKRRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAY
       ::::..::. :::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS53 RLVRMYFDKYVLKPATEGKQRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAY
           410       420       430       440       450       460   

        500       510       520       530       540       550      
pF1KA1 ASKDGVLTEAMMDACVQDAVQQYRQKMRWLKAEGPGRGVEHPLSGVQGETLTSWSLATDP
       ::.::::::::::. :::::::..::: :::::::::: :                    
CCDS53 ASEDGVLTEAMMDTRVQDAVQQHQQKMCWLKAEGPGRGDEPSPS                
           470       480       490       500                       

        560       570       580       590       600  
pF1KA1 SYPCLAGPCTFRICSWMGTGLCPGPLSPRMSCGGGRPFCPPGHPLL

>>CCDS53259.1 ATAD3A gene_id:55210|Hs108|chr1             (586 aa)
 initn: 2913 init1: 2887 opt: 2894  Z-score: 1847.5  bits: 351.8 E(32554): 1.4e-96
Smith-Waterman score: 2894; 93.3% identity (97.8% similar) in 490 aa overlap (47-536:93-582)

         20        30        40        50        60        70      
pF1KA1 SLCRAGAVQTQERLSGSASPEQVPAGECCALQEYEAAVEQLKSEQIRAQAEERRKTLSEE
                                     :.::::::::::::::::::::::::::::
CCDS53 RELEHSRYAKDALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQIRAQAEERRKTLSEE
             70        80        90       100       110       120  

         80        90       100       110       120       130      
pF1KA1 TRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRH
            130       140       150       160       170       180  

        140       150       160       170       180       190      
pF1KA1 KNEMLRVETEARARAKAERENADIIREQIRLKASEHRQTVLESIRTAGTLFGEGFRAFVT
       ::::::::.::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS53 KNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTVLESIRTAGTLFGEGFRAFVT
            190       200       210       220       230       240  

        200       210       220       230       240       250      
pF1KA1 DRDKVTATVAGLTLLAVGVYSAKNATAVTGRFIEARLGKPSLVRETSRITVLEALRHPIQ
       : :::::::::::::::::::::::: :.:::::::::::::::::::::::::::::::
CCDS53 DWDKVTATVAGLTLLAVGVYSAKNATLVAGRFIEARLGKPSLVRETSRITVLEALRHPIQ
            250       260       270       280       290       300  

        260       270       280       290       300       310      
pF1KA1 VSRRLLSRPQDVLEGVVLSPSLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFA
       :::::::::::.::::::::::::::::::::::::::::.:::.::.::::::::::::
CCDS53 VSRRLLSRPQDALEGVVLSPSLEARVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFA
            310       320       330       340       350       360  

        320       330       340       350       360       370      
pF1KA1 KKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRAT
       :::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS53 KKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRKRAT
            370       380       390       400       410       420  

        380       390       400       410       420       430      
pF1KA1 EEISKDLRATLNAFLYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERE
       :.::.:::::::::::. :::::::::::::: ::::: :::.::. ::::::: :::::
CCDS53 EKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPGQEERE
            430       440       450       460       470       480  

        440       450       460       470       480       490      
pF1KA1 RLVRLHFDNCVLKPATEGKRRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAY
       ::::..::. :::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS53 RLVRMYFDKYVLKPATEGKQRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAY
            490       500       510       520       530       540  

        500       510       520       530       540       550      
pF1KA1 ASKDGVLTEAMMDACVQDAVQQYRQKMRWLKAEGPGRGVEHPLSGVQGETLTSWSLATDP
       ::.::::::::::. :::::::..::: :::::::::: :                    
CCDS53 ASEDGVLTEAMMDTRVQDAVQQHQQKMCWLKAEGPGRGDEPSPS                
            550       560       570       580                      

        560       570       580       590       600  
pF1KA1 SYPCLAGPCTFRICSWMGTGLCPGPLSPRMSCGGGRPFCPPGHPLL

>>CCDS44039.1 ATAD3C gene_id:219293|Hs108|chr1            (411 aa)
 initn: 1667 init1: 1603 opt: 2097  Z-score: 1346.4  bits: 258.6 E(32554): 1.1e-68
Smith-Waterman score: 2097; 82.7% identity (91.9% similar) in 405 aa overlap (137-540:12-411)

        110       120       130       140       150       160      
pF1KA1 EENLRKQEESVQKQEAMRRATVEREMELRHKNEMLRVETEARARAKAERENADIIREQIR
                                     ... :..: ... .   .  : :. :.: .
CCDS44                    MSKDALNLAQMQEQTLQLEQQSKLK---QLVNEDL-RKQ-E
                                  10        20           30        

        170       180       190       200       210       220      
pF1KA1 LKASEHRQTVLESIRTAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTG
        ....:.:: :::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ESVQKHHQTFLESIRAAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTG
         40        50        60        70        80        90      

        230       240       250        260       270       280     
pF1KA1 RFIEARLGKPSLVRETSRITVLEALRHPIQ-VSRRLLSRPQDVLEGVVLSPSLEARVRDI
       :.:::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
CCDS44 RYIEARLGKPSLVRETSRITVLEALRHPIQQVSRRLLSRPQDVLEGVVLSPSLEARVRDI
        100       110       120       130       140       150      

         290       300       310       320       330       340     
pF1KA1 AIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTA
       :: ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AIMTRNIKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTA
        160       170       180       190       200       210      

         350       360       370       380       390       400     
pF1KA1 MHKLFDWANTSRRGLLLFMDEADAFLRKRATEEISKDLRATLNAFLYHMGQHSNKFMLVL
       ::::::::::::::::::.:::::::::::::.::.:::::::::::. :::::::::.:
CCDS44 MHKLFDWANTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLYRTGQHSNKFMLIL
        220       230       240       250       260       270      

         410       420       430       440       450       460     
pF1KA1 ASNLPEQFDCAINSRIDVMVHFDLPQQEERERLVRLHFDNCVLKPATEGKRRLKLAQFDY
       ::  ::::: :::. :::::::::: :::: ::::..... :::::::::::::::::::
CCDS44 ASCHPEQFDWAINACIDVMVHFDLPGQEERARLVRMYLNEYVLKPATEGKRRLKLAQFDY
        280       290       300       310       320       330      

         470       480       490       500       510       520     
pF1KA1 GRKCSEVARLTEGMSGREIAQLAVSWQATAYASKDGVLTEAMMDACVQDAVQQYRQKMRW
       :::: :.:::::::: :.::::::::::::::::::::::::::::::: :::..: :::
CCDS44 GRKCLEIARLTEGMSCRKIAQLAVSWQATAYASKDGVLTEAMMDACVQDFVQQHQQMMRW
        340       350       360       370       380       390      

         530       540       550       560       570       580     
pF1KA1 LKAEGPGRGVEHPLSGVQGETLTSWSLATDPSYPCLAGPCTFRICSWMGTGLCPGPLSPR
       ::.: ::   :.: :                                             
CCDS44 LKGERPGPEDEQPSS                                             
        400       410                                              




602 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:54:07 2016 done: Wed Nov  2 20:54:07 2016
 Total Scan time:  3.260 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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