Result of FASTA (ccds) for pF1KA0546
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0546, 1910 aa
  1>>>pF1KA0546 1910 - 1910 aa - 1910 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.1482+/-0.00116; mu= -3.0749+/- 0.070
 mean_var=483.1613+/-96.552, 0's: 0 Z-trim(114.5): 13  B-trim: 0 in 0/55
 Lambda= 0.058348
 statistics sampled from 15030 (15036) to 15030 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.462), width:  16
 Scan time:  5.450

The best scores are:                                      opt bits E(32554)
CCDS41813.1 ZFC3H1 gene_id:196441|Hs108|chr12      (1989) 12646 1080.8       0


>>CCDS41813.1 ZFC3H1 gene_id:196441|Hs108|chr12           (1989 aa)
 initn: 12916 init1: 12646 opt: 12646  Z-score: 5768.6  bits: 1080.8 E(32554):    0
Smith-Waterman score: 12646; 99.9% identity (100.0% similar) in 1910 aa overlap (1-1910:1-1910)

               10        20        30        40        50        60
pF1KA0 MATADTPAPASSGLSPKEEGELEDGEISDDDNNSQIRSRSSSSSSGGGLLPYPRRRPPHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MATADTPAPASSGLSPKEEGELEDGEISDDDNNSQIRSRSSSSSSGGGLLPYPRRRPPHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 ARGGGSGGGGGSSSSSSSSQQQLRNFSRSRHASERGHLRGPSSYRPKEPFRSHPPSVRMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ARGGGSGGGGGSSSSSSSSQQQLRNFSRSRHASERGHLRGPSSYRPKEPFRSHPPSVRMP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 SSSLSESSPRPSFWERSHLALDRFRFRGRPYRGGSRWSRGRGVGERGGKPGCRPPLGGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SSSLSESSPRPSFWERSHLALDRFRFRGRPYRGGSRWSRGRGVGERGGKPGCRPPLGGGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 GSGFSSSQSWREPSPPRKSSKSFGRSPSRKQNYSSKNENCVEETFEDLLLKYKQIQLELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GSGFSSSQSWREPSPPRKSSKSFGRSPSRKQNYSSKNENCVEETFEDLLLKYKQIQLELE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 CINKDEKLALSSKEENVQEDPKTLNFEDQTSTDNVSITKDSSKEVAPEEKTQVKTFQAFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CINKDEKLALSSKEENVQEDPKTLNFEDQTSTDNVSITKDSSKEVAPEEKTQVKTFQAFE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 LKPLRQKLTLPGDKNRLKKVKDGAKPLSLKSDTTDSSQGLQDKEQNLTRRISTSDILSEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LKPLRQKLTLPGDKNRLKKVKDGAKPLSLKSDTTDSSQGLQDKEQNLTRRISTSDILSEK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 KLGEDEEELSELQLRLLALQSASKKWQQKEQQVMKESKEKLTKTKTVQQKVKTSTKTHSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KLGEDEEELSELQLRLLALQSASKKWQQKEQQVMKESKEKLTKTKTVQQKVKTSTKTHSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 KKVSTTAKQALRKQQTKAWKKLQQQKEQERQKEEDQRKQAEEEERRKREEEIRKIRDLSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KKVSTTAKQALRKQQTKAWKKLQQQKEQERQKEEDQRKQAEEEERRKREEEIRKIRDLSN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 QEEQYNRFMKLVGGKRRSRSKSSDPDLRRSLDKQPTDSGGGIYQYDNYEEVAMDTDSETS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QEEQYNRFMKLVGGKRRSRSKSSDPDLRRSLDKQPTDSGGGIYQYDNYEEVAMDTDSETS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 SPAPSPVQPPFFSECSLGYFSPAPSLSLPPPPQVSSLPPLSQPYVEGLCVSLEPLPPLPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SPAPSPVQPPFFSECSLGYFSPAPSLSLPPPPQVSSLPPLSQPYVEGLCVSLEPLPPLPP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 LPPLPPEDPEQPPKPPFADEEEEEEMLLREELLKSLANKRAFKPEETSSNSDPPSPPVLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LPPLPPEDPEQPPKPPFADEEEEEEMLLREELLKSLANKRAFKPEETSSNSDPPSPPVLN
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 NSHPVPRSNLSIVSINTVSQPRIQNPKFHRGPRLPRTVISLPKHKSVVVTLNDSDDSESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NSHPVPRSNLSIVSINTVSQPRIQNPKFHRGPRLPRTVISLPKHKSVVVTLNDSDDSESD
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 GEASKSTNSVFGGLESMIKEARRTAEQASKPKVPPKSEKENDPLRTPEALPEEKKIEYRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GEASKSTNSVFGGLESMIKEARRTAEQASKPKVPPKSEKENDPLRTPEALPEEKKIEYRL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 LKEEIANREKQRLIKSDQLKTSSSSPANSDVEIDGIGRIAMVTKQVTDAESKLKKHRILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LKEEIANREKQRLIKSDQLKTSSSSPANSDVEIDGIGRIAMVTKQVTDAESKLKKHRILL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 MKDESVLKNLVQQEAKKKESVRNAEAKITKLTEQLQATEKILNVNRMFLKKLQEQIHRVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MKDESVLKNLVQQEAKKKESVRNAEAKITKLTEQLQATEKILNVNRMFLKKLQEQIHRVQ
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 QRVTIKKALTLKYGEELARAKAVASKEIGKRKLEQDRFGPNKMMRLDSSPVSSPRKHSAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QRVTIKKALTLKYGEELARAKAVASKEIGKRKLEQDRFGPNKMMRLDSSPVSSPRKHSAE
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 LIAMEKRRLQKLEYEYALKIQKLKEARALKAKEQQNISPVVEEEPEFSLPQPSLHDLTQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LIAMEKRRLQKLEYEYALKIQKLKEARALKAKEQQNISPVVEEEPEFSLPQPSLHDLTQD
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 KLTLDTEENDVDDEILSGSSRERRRSFLESNYFTKPNLKHTDTANKECINKLNKNTVEKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KLTLDTEENDVDDEILSGSSRERRRSFLESNYFTKPNLKHTDTANKECINKLNKNTVEKP
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 ELFLGLKIGELQKLYSKADSLKQLILKTTTGITEKVLHGQEISVDVDFVTAQSKTMEVKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ELFLGLKIGELQKLYSKADSLKQLILKTTTGITEKVLHGQEISVDVDFVTAQSKTMEVKP
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 CPFRPYHSPLLVFKSYRFSPYYRTKEKLPLSSVSYSNMIEPDQCFCRFDLTGTCNDDDCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CPFRPYHSPLLVFKSYRFSPYYRTKEKLPLSSVSYSNMIEPDQCFCRFDLTGTCNDDDCQ
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA0 WQHIQDYTLSRKQLFQDILSYNLSLIGCAETSTNEEITASAEKYVEKLFGVNKDRMSMDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WQHIQDYTLSRKQLFQDILSYNLSLIGCAETSTNEEITASAEKYVEKLFGVNKDRMSMDQ
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA0 MAVLLVSNINESKGHTPPFTTYKDKRKWKPKFWRKPISDNSFSSDEEQSTGPIKYAFQPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAVLLVSNINESKGHTPPFTTYKDKRKWKPKFWRKPISDNSFSSDEEQSTGPIKYAFQPE
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA0 NQINVPALDTVVTPDDVRYFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGECS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NQINVPALDTVVTPDDVRYFTNETDDIANLEASVLENPSHVQLWLKLAYKYLNQNEGECS
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
pF1KA0 ESLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKDEVQEMCETAVEYAPDYQSFWTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ESLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKDEVQEMCETAVEYAPDYQSFWTF
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
pF1KA0 LHLESTFEEKDYVCERMLEFLMGAAKQETSNILSFQLLEALLFRVQLHIFTGRCQSALAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LHLESTFEEKDYVCERMLEFLMGAAKQETSNILSFQLLEALLFRVQLHIFTGRCQSALAI
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
pF1KA0 LQNALKSANDGIVAEYLKTSDRCLAWLAYIHLIEFNILPSKFYDPSNDNPSRIVNTESFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LQNALKSANDGIVAEYLKTSDRCLAWLAYIHLIEFNILPSKFYDPSNDNPSRIVNTESFV
             1510      1520      1530      1540      1550      1560

             1570      1580      1590      1600      1610      1620
pF1KA0 MPWQAVQDVKTNPDMLLAVFEDAVKACTDESLAVEERIEACLPLYTNMIALHQLLERYEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MPWQAVQDVKTNPDMLLAVFEDAVKACTDESLAVEERIEACLPLYTNMIALHQLLERYEA
             1570      1580      1590      1600      1610      1620

             1630      1640      1650      1660      1670      1680
pF1KA0 AMELCKSLLESCPINCQLLEALVALYLQTNQHDKARAVWLTAFEKNPQNAEVFYHMCKFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AMELCKSLLESCPINCQLLEALVALYLQTNQHDKARAVWLTAFEKNPQNAEVFYHMCKFF
             1630      1640      1650      1660      1670      1680

             1690      1700      1710      1720      1730      1740
pF1KA0 ILQNRGDNLLPFLRKFIASFFKPGFEKYNNLDLFRYLLNIPGPIDIPSRLCKGNFDDDMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ILQNRGDNLLPFLRKFIASFFKPGFEKYNNLDLFRYLLNIPGPIDIPSRLCKGNFDDDMF
             1690      1700      1710      1720      1730      1740

             1750      1760      1770      1780      1790      1800
pF1KA0 NHQVPYLWLIYCLCHPLQSSIKETVEAYEAALGVAMRCDIVQKIWMDYLVFANNRAAGSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NHQVPYLWLIYCLCHPLQSSIKETVEAYEAALGVAMRCDIVQKIWMDYLVFANNRAAGSR
             1750      1760      1770      1780      1790      1800

             1810      1820      1830      1840      1850      1860
pF1KA0 NKVQEFKFFTDLVNRCLVTVPARYPIPFSSADYWSNYEFHNRVIFFYLSCVPKTQHSKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NKVQEFKFFTDLVNRCLVTVPARYPIPFSSADYWSNYEFHNRVIFFYLSCVPKTQHSKTL
             1810      1820      1830      1840      1850      1860

             1870      1880      1890      1900      1910          
pF1KA0 ERFCSVMPANSGLALRLLQHEWEESNVQILKLQAKMFTYNIPTCLATWKM          
       :::::::::::::::::::::::::::::::::::::::::::::::::.          
CCDS41 ERFCSVMPANSGLALRLLQHEWEESNVQILKLQAKMFTYNIPTCLATWKIAIAAEIVLKG
             1870      1880      1890      1900      1910      1920

CCDS41 QREVHRLYQRALQKLPLCASLWKDQLLFEASEGGKTDNLRKLVSKCQEIGVSLNELLNLN
             1930      1940      1950      1960      1970      1980




1910 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:15:07 2016 done: Wed Nov  2 19:15:08 2016
 Total Scan time:  5.450 Total Display time:  0.170

Function used was FASTA [36.3.4 Apr, 2011]
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