Result of FASTA (ccds) for pF1KA0471
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0471, 370 aa
  1>>>pF1KA0471 370 - 370 aa - 370 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8638+/-0.00109; mu= -3.8752+/- 0.065
 mean_var=296.6939+/-61.284, 0's: 0 Z-trim(112.0): 39  B-trim: 98 in 1/50
 Lambda= 0.074459
 statistics sampled from 12811 (12834) to 12811 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.394), width:  16
 Scan time:  2.450

The best scores are:                                      opt bits E(32554)
CCDS58046.1 RABGAP1L gene_id:9910|Hs108|chr1       ( 370) 2372 268.2 8.2e-72
CCDS81407.1 RABGAP1L gene_id:9910|Hs108|chr1       ( 308) 1708 196.8 2.1e-50
CCDS55662.1 RABGAP1L gene_id:9910|Hs108|chr1       ( 253) 1504 174.8 7.3e-44
CCDS6848.2 RABGAP1 gene_id:23637|Hs108|chr9        (1069) 1384 162.5 1.6e-39
CCDS1314.1 RABGAP1L gene_id:9910|Hs108|chr1        ( 815)  495 66.9 7.3e-11


>>CCDS58046.1 RABGAP1L gene_id:9910|Hs108|chr1            (370 aa)
 initn: 2372 init1: 2372 opt: 2372  Z-score: 1402.7  bits: 268.2 E(32554): 8.2e-72
Smith-Waterman score: 2372; 100.0% identity (100.0% similar) in 370 aa overlap (1-370:1-370)

               10        20        30        40        50        60
pF1KA0 MEEGVPCPAPAAKLTPPVKKSQDMHDERSKLVNEYACRVLELLGMGHRLFVPRLLATSKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MEEGVPCPAPAAKLTPPVKKSQDMHDERSKLVNEYACRVLELLGMGHRLFVPRLLATSKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 DLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 QQEDPMDRYKRENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QQEDPMDRYKRENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 LTKQRLVETEEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LTKQRLVETEEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 KQQAASKEELEVVKGKMMACKHCSDIFSKEGALKLAATGREDQGIETDDEKDSLKKQLRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KQQAASKEELEVVKGKMMACKHCSDIFSKEGALKLAATGREDQGIETDDEKDSLKKQLRE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 MELELAQTKLQLVEAKCKIQELEHQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MELELAQTKLQLVEAKCKIQELEHQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPA
              310       320       330       340       350       360

              370
pF1KA0 PVTQPPKEST
       ::::::::::
CCDS58 PVTQPPKEST
              370

>>CCDS81407.1 RABGAP1L gene_id:9910|Hs108|chr1            (308 aa)
 initn: 1708 init1: 1708 opt: 1708  Z-score: 1018.3  bits: 196.8 E(32554): 2.1e-50
Smith-Waterman score: 1708; 100.0% identity (100.0% similar) in 271 aa overlap (100-370:38-308)

      70        80        90       100       110       120         
pF1KA0 ALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRY
                                     ::::::::::::::::::::::::::::::
CCDS81 MVAYDAHVFSQLHDEDFLTSLVAISKPRSMVPTKKLKKYEKEYQTMRESQLQQEDPMDRY
        10        20        30        40        50        60       

     130       140       150       160       170       180         
pF1KA0 KRENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KRENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVET
        70        80        90       100       110       120       

     190       200       210       220       230       240         
pF1KA0 EEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEE
       130       140       150       160       170       180       

     250       260       270       280       290       300         
pF1KA0 LEVVKGKMMACKHCSDIFSKEGALKLAATGREDQGIETDDEKDSLKKQLREMELELAQTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LEVVKGKMMACKHCSDIFSKEGALKLAATGREDQGIETDDEKDSLKKQLREMELELAQTK
       190       200       210       220       230       240       

     310       320       330       340       350       360         
pF1KA0 LQLVEAKCKIQELEHQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPAPVTQPPKES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LQLVEAKCKIQELEHQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPAPVTQPPKES
       250       260       270       280       290       300       

     370
pF1KA0 T
       :
CCDS81 T
        

>>CCDS55662.1 RABGAP1L gene_id:9910|Hs108|chr1            (253 aa)
 initn: 1503 init1: 1503 opt: 1504  Z-score: 901.0  bits: 174.8 E(32554): 7.3e-44
Smith-Waterman score: 1504; 98.4% identity (98.8% similar) in 245 aa overlap (126-370:9-253)

         100       110       120       130       140       150     
pF1KA0 CNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKRENRRLQEASMRLEQENDDLAHELV
                                     :   .:::::::::::::::::::::::::
CCDS55                       MIENSSWSMTFEERENRRLQEASMRLEQENDDLAHELV
                                     10        20        30        

         160       170       180       190       200       210     
pF1KA0 TSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQLKEVFRKQLEKAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQLKEVFRKQLEKAE
       40        50        60        70        80        90        

         220       230       240       250       260       270     
pF1KA0 YEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEELEVVKGKMMACKHCSDIFSKEGALKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEELEVVKGKMMACKHCSDIFSKEGALKL
      100       110       120       130       140       150        

         280       290       300       310       320       330     
pF1KA0 AATGREDQGIETDDEKDSLKKQLREMELELAQTKLQLVEAKCKIQELEHQRGALMNEIQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AATGREDQGIETDDEKDSLKKQLREMELELAQTKLQLVEAKCKIQELEHQRGALMNEIQA
      160       170       180       190       200       210        

         340       350       360       370
pF1KA0 AKNSWFSKTLNSIKTATGTQPLQPAPVTQPPKEST
       :::::::::::::::::::::::::::::::::::
CCDS55 AKNSWFSKTLNSIKTATGTQPLQPAPVTQPPKEST
      220       230       240       250   

>>CCDS6848.2 RABGAP1 gene_id:23637|Hs108|chr9             (1069 aa)
 initn: 1448 init1: 1384 opt: 1384  Z-score: 823.1  bits: 162.5 E(32554): 1.6e-39
Smith-Waterman score: 1384; 69.5% identity (91.1% similar) in 302 aa overlap (54-355:763-1064)

            30        40        50        60        70        80   
pF1KA0 MHDERSKLVNEYACRVLELLGMGHRLFVPRLLATSKEDLLQADFEGALKFFRVQLPKRYR
                                     :: :::.::: .::::::::::::::::::
CCDS68 TAKFPLYMVFHIIDLLLCEGISVIFNVALGLLKTSKDDLLLTDFEGALKFFRVQLPKRYR
            740       750       760       770       780       790  

            90       100       110       120       130       140   
pF1KA0 AEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKRENRRLQEASMRL
       .::::..::: :::.:.  ::::::::::.::::.: :::::..:..:::::::::.:::
CCDS68 SEENAKKLMELACNMKISQKKLKKYEKEYHTMREQQAQQEDPIERFERENRRLQEANMRL
            800       810       820       830       840       850  

           150       160       170       180       190       200   
pF1KA0 EQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQL
       :::::::::::::::::::.:::.::.:::.::::::.:::.:...:::::. :::.:::
CCDS68 EQENDDLAHELVTSKIALRKDLDNAEEKADALNKELLMTKQKLIDAEEEKRRLEEESAQL
            860       870       880       890       900       910  

           210       220       230       240       250       260   
pF1KA0 KEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEELEVVKGKMMACKHC
       ::. :..:.::: ::::...::..::::::::: ::::::.:.: :.: .. :.  :..:
CCDS68 KEMCRRELDKAESEIKKNSSIIGDYKQICSQLSERLEKQQTANKVEIEKIRQKVDDCERC
            920       930       940       950       960       970  

           270       280       290       300       310       320   
pF1KA0 SDIFSKEGALKLAATGREDQGIETDDEKDSLKKQLREMELELAQTKLQLVEAKCKIQELE
        ..:.::: .:  .. .:    .::.::..::.:::::::::::::::::::.::::.::
CCDS68 REFFNKEGRVKGISSTKEVLDEDTDEEKETLKNQLREMELELAQTKLQLVEAECKIQDLE
            980       990      1000      1010      1020      1030  

           330       340       350       360       370
pF1KA0 HQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPAPVTQPPKEST
       :. :  .::.::::..::..::.:::::::.:               
CCDS68 HHLGLALNEVQAAKKTWFNRTLSSIKTATGVQGKETC          
           1040      1050      1060                   

>>CCDS1314.1 RABGAP1L gene_id:9910|Hs108|chr1             (815 aa)
 initn: 495 init1: 495 opt: 495  Z-score: 308.5  bits: 66.9 E(32554): 7.3e-11
Smith-Waterman score: 495; 98.7% identity (98.7% similar) in 77 aa overlap (54-130:735-811)

            30        40        50        60        70        80   
pF1KA0 MHDERSKLVNEYACRVLELLGMGHRLFVPRLLATSKEDLLQADFEGALKFFRVQLPKRYR
                                     :: :::::::::::::::::::::::::::
CCDS13 TAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYR
          710       720       730       740       750       760    

            90       100       110       120       130       140   
pF1KA0 AEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKRENRRLQEASMRL
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS13 AEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKFVYL         
          770       780       790       800       810              

           150       160       170       180       190       200   
pF1KA0 EQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQL




370 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:01:57 2016 done: Wed Nov  2 19:01:58 2016
 Total Scan time:  2.450 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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